RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TRAV8-4A0A0B4J246 113 aa7.08□□□□□ -1.28
SS18-217ENST00000580958 A0A1B0GV90 55 aa7.08□□□□□ -1.28
SS18-217ENST00000580958 TMEM238C9JI98 176 aa7.08□□□□□ -1.28
SS18-217ENST00000580958 PTTG1IPP53801 180 aa7.08□□□□□ -1.28
SS18-217ENST00000580958 MIAQ16674 131 aa7.08□□□□□ -1.28
SS18-217ENST00000580958 LYSTQ99698 3801 aa7.08□□□□□ -1.28
SS18-217ENST00000580958 LITAFQ99732 161 aa7.08□□□□□ -1.28
SS18-217ENST00000580958 A6NDN8 102 aa7.07□□□□□ -1.28
SS18-217ENST00000580958 MALP21145 153 aa7.07□□□□□ -1.28
SS18-217ENST00000580958 UPK3BQ9BT76 320 aa7.07□□□□□ -1.28
SS18-217ENST00000580958 NUPR2A6NF83 97 aa7.06□□□□□ -1.28
SS18-217ENST00000580958 TAX1BP3O14907 124 aa7.06□□□□□ -1.28
SS18-217ENST00000580958 EIF4EBP3O60516 100 aaPredicted RBP7.06□□□□□ -1.28
SS18-217ENST00000580958 TIMM17BO60830 172 aa7.06□□□□□ -1.28
SS18-217ENST00000580958 PRSS2P07478 247 aa7.06□□□□□ -1.28
SS18-217ENST00000580958 MEIG1Q5JSS6 88 aa7.06□□□□□ -1.28
SS18-217ENST00000580958 ADAMTSL4-AS1Q5T5F5 129 aa7.06□□□□□ -1.28
SS18-217ENST00000580958 Q6ZVH6 145 aa7.06□□□□□ -1.28
SS18-217ENST00000580958 Q8IZM0 81 aa7.06□□□□□ -1.28
SS18-217ENST00000580958 SPANXDQ9BXN6 97 aa7.06□□□□□ -1.28
SS18-217ENST00000580958 NHP2Q9NX24 153 aaKnown RBP7.06□□□□□ -1.28
SS18-217ENST00000580958 SPANXCQ9NY87 97 aa7.06□□□□□ -1.28
SS18-217ENST00000580958 KRTAP4-8A0A0G2JLE6 195 aa7.05□□□□□ -1.28
SS18-217ENST00000580958 A0A0U1RRA0 63 aa7.05□□□□□ -1.28
SS18-217ENST00000580958 HERV-K104P63124 156 aa7.05□□□□□ -1.28
SS18-217ENST00000580958 C6orf226Q5I0X4 101 aa7.05□□□□□ -1.28
SS18-217ENST00000580958 CFAP161Q6P656 301 aa7.05□□□□□ -1.28
SS18-217ENST00000580958 KRTAP26-1Q6PEX3 210 aa7.05□□□□□ -1.28
SS18-217ENST00000580958 MUSTN1Q8IVN3 82 aa7.05□□□□□ -1.28
SS18-217ENST00000580958 UBE2DNLQ8IWF7 75 aa7.05□□□□□ -1.28
SS18-217ENST00000580958 KLK5Q9Y337 293 aaPredicted RBP7.05□□□□□ -1.28
SS18-217ENST00000580958 DNAH6Q9C0G6 4158 aa7.04□□□□□ -1.28
SS18-217ENST00000580958 IGKV2D-24A0A075B6R9 120 aa7.04□□□□□ -1.28
SS18-217ENST00000580958 K7ERJ3 54 aa7.04□□□□□ -1.28
SS18-217ENST00000580958 APOMO95445 188 aa7.04□□□□□ -1.28
SS18-217ENST00000580958 SMIM13P0DJ93 91 aa7.04□□□□□ -1.28
SS18-217ENST00000580958 NPC2P61916 151 aa7.04□□□□□ -1.28
SS18-217ENST00000580958 CIRBPQ14011 172 aaKnown RBP7.04□□□□□ -1.28
SS18-217ENST00000580958 KIAA0087Q14695 138 aa7.04□□□□□ -1.28
SS18-217ENST00000580958 DAND5Q8N907 189 aa7.04□□□□□ -1.28
SS18-217ENST00000580958 C1orf43Q9BWL3 253 aa7.04□□□□□ -1.28
SS18-217ENST00000580958 Q9HAA7 133 aa7.04□□□□□ -1.28
SS18-217ENST00000580958 TMEM238LA0A1B0GVL6 79 aa7.03□□□□□ -1.28
SS18-217ENST00000580958 IBA57-AS1B1ANH7 110 aa7.03□□□□□ -1.28
SS18-217ENST00000580958 SPAG11BQ08648 103 aa7.03□□□□□ -1.28
SS18-217ENST00000580958 C2orf82Q6UX34 121 aa7.03□□□□□ -1.28
SS18-217ENST00000580958 RAB37Q96AX2 223 aa7.03□□□□□ -1.28
SS18-217ENST00000580958 DNAH10Q8IVF4 4471 aa7.02□□□□□ -1.29
SS18-217ENST00000580958 SFTA2Q6UW10 78 aa7.02□□□□□ -1.29
SS18-217ENST00000580958 LINC00526Q96FQ7 95 aa7.02□□□□□ -1.29
SS18-217ENST00000580958 ALMS1Q8TCU4 4167 aa7.01□□□□□ -1.29
SS18-217ENST00000580958 A0A1B0GWB2 263 aa7.01□□□□□ -1.29
SS18-217ENST00000580958 A4D1N5 150 aa7.01□□□□□ -1.29
SS18-217ENST00000580958 IFITM1P13164 125 aa7.01□□□□□ -1.29
SS18-217ENST00000580958 CXCL5P42830 114 aa7.01□□□□□ -1.29
SS18-217ENST00000580958 CKS1BP61024 79 aa7.01□□□□□ -1.29
SS18-217ENST00000580958 RPL24P83731 157 aaKnown RBP7.01□□□□□ -1.29
SS18-217ENST00000580958 C6orf223Q8N319 242 aa7.01□□□□□ -1.29
SS18-217ENST00000580958 COX11Q9Y6N1 276 aa7.01□□□□□ -1.29
SS18-217ENST00000580958 C9orf118A6NHY6 69 aa7□□□□□ -1.29
SS18-217ENST00000580958 LINC00158P58513 81 aa7□□□□□ -1.29
SS18-217ENST00000580958 C15orf56Q8N910 161 aa7□□□□□ -1.29
SS18-217ENST00000580958 LINC00308Q8TCZ7 52 aa7□□□□□ -1.29
SS18-217ENST00000580958 ERG28Q9UKR5 140 aa7□□□□□ -1.29
SS18-217ENST00000580958 FBN3Q75N90 2809 aa7□□□□□ -1.29
SS18-217ENST00000580958 CFC1BP0CG36 223 aa6.99□□□□□ -1.29
SS18-217ENST00000580958 CFC1P0CG37 223 aa6.99□□□□□ -1.29
SS18-217ENST00000580958 PFN2P35080 140 aa6.99□□□□□ -1.29
SS18-217ENST00000580958 HIGD2BQ4VC39 106 aa6.99□□□□□ -1.29
SS18-217ENST00000580958 C10orf25Q5T742 122 aa6.99□□□□□ -1.29
SS18-217ENST00000580958 UNQ6190/PRO20217Q6UXQ8 127 aa6.99□□□□□ -1.29
SS18-217ENST00000580958 SOSTDC1Q6X4U4 206 aa6.99□□□□□ -1.29
SS18-217ENST00000580958 MIR7-3HGQ8N6C7 128 aa6.99□□□□□ -1.29
SS18-217ENST00000580958 RMI2Q96E14 147 aa6.99□□□□□ -1.29
SS18-217ENST00000580958 NAA38Q9BRA0 125 aaKnown RBP6.99□□□□□ -1.29
SS18-217ENST00000580958 TENM2Q9NT68 2774 aa6.99□□□□□ -1.29
SS18-217ENST00000580958 NTN5Q8WTR8 489 aaPredicted RBP6.98□□□□□ -1.29
SS18-217ENST00000580958 KRTAP1-5Q9BYS1 174 aa6.98□□□□□ -1.29
SS18-217ENST00000580958 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.97□□□□□ -1.29
SS18-217ENST00000580958 H3BUT2 72 aa6.97□□□□□ -1.29
SS18-217ENST00000580958 ZNF561-AS1K7EIQ3 104 aa6.97□□□□□ -1.29
SS18-217ENST00000580958 C9orf116Q5BN46 136 aaPredicted RBP6.97□□□□□ -1.29
SS18-217ENST00000580958 CASC10Q5T4H9 136 aa6.97□□□□□ -1.29
SS18-217ENST00000580958 COPS9Q8WXC6 57 aa6.97□□□□□ -1.29
SS18-217ENST00000580958 A0A0B4J2C4 111 aa6.96□□□□□ -1.3
SS18-217ENST00000580958 TGP01266 2768 aa6.95□□□□□ -1.3
SS18-217ENST00000580958 GVQW2A0A096LPI5 108 aaPredicted RBP6.95□□□□□ -1.3
SS18-217ENST00000580958 TSPAN13O95857 204 aa6.95□□□□□ -1.3
SS18-217ENST00000580958 VAMP3Q15836 100 aa6.95□□□□□ -1.3
SS18-217ENST00000580958 MUC7Q8TAX7 377 aa6.95□□□□□ -1.3
SS18-217ENST00000580958 C2orf48Q96LS8 159 aa6.95□□□□□ -1.3
SS18-217ENST00000580958 CAMK2N2Q96S95 79 aa6.95□□□□□ -1.3
SS18-217ENST00000580958 PPDPFQ9H3Y8 114 aa6.95□□□□□ -1.3
SS18-217ENST00000580958 C6orf48Q9UBA6 75 aa6.95□□□□□ -1.3
SS18-217ENST00000580958 PRO1854Q9UHT4 67 aa6.95□□□□□ -1.3
SS18-217ENST00000580958 USP17L23D6RBM5 183 aa6.94□□□□□ -1.3
SS18-217ENST00000580958 COX17Q14061 63 aa6.94□□□□□ -1.3
SS18-217ENST00000580958 DNAH2Q9P225 4427 aa6.93□□□□□ -1.3
SS18-217ENST00000580958 TRBV30A0A0K0K1B3 111 aa6.93□□□□□ -1.3
SS18-217ENST00000580958 NBDYA0A0U1RRE5 68 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 150.5 ms