RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 BRD3OSQ6XYD6 125 aa2.58□□□□□ -2
NUP88-213ENST00000576862 FAM103A1Q9BTL3 118 aaKnown RBP2.58□□□□□ -2
NUP88-213ENST00000576862 LY96Q9Y6Y9 160 aa2.58□□□□□ -2
NUP88-213ENST00000576862 S4R3C0 116 aa2.58□□□□□ -2
NUP88-213ENST00000576862 CHD3Q12873 2000 aaKnown RBP2.58□□□□□ -2
NUP88-213ENST00000576862 HEATR1Q9H583 2144 aaKnown RBP2.57□□□□□ -2
NUP88-213ENST00000576862 DCHS2Q6V1P9 2916 aa2.57□□□□□ -2
NUP88-213ENST00000576862 TCRBV4S1A1TA0A5B7 111 aa2.57□□□□□ -2
NUP88-213ENST00000576862 RBAKDNA6NC62 111 aa2.57□□□□□ -2
NUP88-213ENST00000576862 A6NN06 94 aa2.57□□□□□ -2
NUP88-213ENST00000576862 B4DSR2 109 aa2.57□□□□□ -2
NUP88-213ENST00000576862 J3QKU1 62 aa2.57□□□□□ -2
NUP88-213ENST00000576862 ARL14EPLP0DKL9 152 aa2.57□□□□□ -2
NUP88-213ENST00000576862 GCHFRP30047 84 aa2.57□□□□□ -2
NUP88-213ENST00000576862 CKS2P33552 79 aa2.57□□□□□ -2
NUP88-213ENST00000576862 SEC11AP67812 179 aa2.57□□□□□ -2
NUP88-213ENST00000576862 UBE2L3P68036 154 aaKnown RBP2.57□□□□□ -2
NUP88-213ENST00000576862 CIRBPQ14011 172 aaKnown RBP2.57□□□□□ -2
NUP88-213ENST00000576862 DEFB113Q30KQ7 82 aa2.57□□□□□ -2
NUP88-213ENST00000576862 CYP2G1PQ6ZSU1 146 aa2.57□□□□□ -2
NUP88-213ENST00000576862 C5orf38Q86SI9 138 aa2.57□□□□□ -2
NUP88-213ENST00000576862 CIRBP-AS1Q8TBR5 109 aa2.57□□□□□ -2
NUP88-213ENST00000576862 CHCHD1Q96BP2 118 aaKnown RBP2.57□□□□□ -2
NUP88-213ENST00000576862 FAM167A-AS1Q96KT0 104 aa2.57□□□□□ -2
NUP88-213ENST00000576862 IMMP2LQ96T52 175 aa2.57□□□□□ -2
NUP88-213ENST00000576862 TRGV9Q99603 122 aa2.57□□□□□ -2
NUP88-213ENST00000576862 TTTY13Q9BZ97 58 aa2.57□□□□□ -2
NUP88-213ENST00000576862 TRAPPC1Q9Y5R8 145 aa2.57□□□□□ -2
NUP88-213ENST00000576862 FASNP49327 2511 aaKnown RBP2.57□□□□□ -2
NUP88-213ENST00000576862 IGHV3-73A0A0B4J1V6 119 aa2.56□□□□□ -2
NUP88-213ENST00000576862 TRBV7-7A0A0K0K1E9 115 aa2.56□□□□□ -2
NUP88-213ENST00000576862 MDFIC2A0A1B0GVS7 189 aa2.56□□□□□ -2
NUP88-213ENST00000576862 C7orf77A4D0Y5 90 aa2.56□□□□□ -2
NUP88-213ENST00000576862 A6NED7 52 aa2.56□□□□□ -2
NUP88-213ENST00000576862 H3BMM0 161 aa2.56□□□□□ -2
NUP88-213ENST00000576862 H3BRM9 83 aa2.56□□□□□ -2
NUP88-213ENST00000576862 SS18Q15532 418 aa2.56□□□□□ -2
NUP88-213ENST00000576862 ADIRFQ15847 76 aa2.56□□□□□ -2
NUP88-213ENST00000576862 KLK9Q2XQG4 91 aa2.56□□□□□ -2
NUP88-213ENST00000576862 SDIM1Q6ZPB5 146 aa2.56□□□□□ -2
NUP88-213ENST00000576862 MIR7-3HGQ8N6C7 128 aa2.56□□□□□ -2
NUP88-213ENST00000576862 C5orf56Q8N8D9 126 aa2.56□□□□□ -2
NUP88-213ENST00000576862 Q8NDZ9 215 aa2.56□□□□□ -2
NUP88-213ENST00000576862 MUC7Q8TAX7 377 aa2.56□□□□□ -2
NUP88-213ENST00000576862 MYOZ3Q8TDC0 251 aa2.56□□□□□ -2
NUP88-213ENST00000576862 UBE2WQ96B02 151 aa2.56□□□□□ -2
NUP88-213ENST00000576862 ST20Q9HBF5 79 aa2.56□□□□□ -2
NUP88-213ENST00000576862 MANBALQ9NQG1 85 aa2.56□□□□□ -2
NUP88-213ENST00000576862 KLK9Q9UKQ9 250 aa2.56□□□□□ -2
NUP88-213ENST00000576862 LRBAP50851 2863 aa2.56□□□□□ -2
NUP88-213ENST00000576862 CSPG4Q6UVK1 2322 aa2.56□□□□□ -2
NUP88-213ENST00000576862 ABCA2Q9BZC7 2435 aa2.56□□□□□ -2
NUP88-213ENST00000576862 G3V318 75 aa2.55□□□□□ -2
NUP88-213ENST00000576862 H3BUX3 64 aa2.55□□□□□ -2
NUP88-213ENST00000576862 TIMM17BO60830 172 aa2.55□□□□□ -2
NUP88-213ENST00000576862 TNCP24821 2201 aa2.55□□□□□ -2
NUP88-213ENST00000576862 XCL1P47992 114 aa2.55□□□□□ -2
NUP88-213ENST00000576862 FXYD2P54710 66 aa2.55□□□□□ -2
NUP88-213ENST00000576862 MAP1AP78559 2803 aaPredicted RBP2.55□□□□□ -2
NUP88-213ENST00000576862 DEFB112Q30KQ8 113 aa2.55□□□□□ -2
NUP88-213ENST00000576862 C10orf113Q5VZT2 155 aa2.55□□□□□ -2
NUP88-213ENST00000576862 ADM2Q7Z4H4 148 aa2.55□□□□□ -2
NUP88-213ENST00000576862 SPANXA2-OT1Q8N9U9 137 aa2.55□□□□□ -2
NUP88-213ENST00000576862 CLEC2BQ92478 149 aa2.55□□□□□ -2
NUP88-213ENST00000576862 TVP23CQ96ET8 276 aa2.55□□□□□ -2
NUP88-213ENST00000576862 DSCR8Q96T75 97 aa2.55□□□□□ -2
NUP88-213ENST00000576862 SMIM7Q9BQ49 75 aa2.55□□□□□ -2
NUP88-213ENST00000576862 TANC2Q9HCD6 1990 aa2.55□□□□□ -2
NUP88-213ENST00000576862 TLN2Q9Y4G6 2542 aa2.55□□□□□ -2
NUP88-213ENST00000576862 GCN1Q92616 2671 aaKnown RBP2.55□□□□□ -2
NUP88-213ENST00000576862 NAV3Q8IVL0 2385 aa2.54□□□□□ -2
NUP88-213ENST00000576862 ABCA1O95477 2261 aa2.54□□□□□ -2
NUP88-213ENST00000576862 APCP25054 2843 aa2.54□□□□□ -2
NUP88-213ENST00000576862 ZANQ9Y493 2812 aa2.54□□□□□ -2
NUP88-213ENST00000576862 ITPR3Q14573 2671 aa2.54□□□□□ -2
NUP88-213ENST00000576862 A0A087WWC5 75 aa2.54□□□□□ -2
NUP88-213ENST00000576862 C19orf71A6NCJ1 209 aa2.54□□□□□ -2
NUP88-213ENST00000576862 H3BRN7 92 aa2.54□□□□□ -2
NUP88-213ENST00000576862 ATOX1O00244 68 aa2.54□□□□□ -2
NUP88-213ENST00000576862 TRGV3P03979 118 aa2.54□□□□□ -2
NUP88-213ENST00000576862 IL4P05112 153 aa2.54□□□□□ -2
NUP88-213ENST00000576862 CTSGP08311 255 aa2.54□□□□□ -2
NUP88-213ENST00000576862 Q6ZQT7 251 aa2.54□□□□□ -2
NUP88-213ENST00000576862 Q8N8P6 123 aa2.54□□□□□ -2
NUP88-213ENST00000576862 SLC50A1Q9BRV3 221 aa2.54□□□□□ -2
NUP88-213ENST00000576862 TMEM167BQ9NRX6 74 aa2.54□□□□□ -2
NUP88-213ENST00000576862 HHLA3Q9XRX5 114 aa2.54□□□□□ -2
NUP88-213ENST00000576862 ARL2-SNX15V9GYD0 113 aa2.54□□□□□ -2
NUP88-213ENST00000576862 MYO9AB2RTY4 2548 aa2.53□□□□□ -2
NUP88-213ENST00000576862 FLNBO75369 2602 aaKnown RBP2.53□□□□□ -2
NUP88-213ENST00000576862 IGHV3OR16-8A0A075B7F1 116 aa2.53□□□□□ -2
NUP88-213ENST00000576862 IGHV1-24A0A0C4DH33 117 aa2.53□□□□□ -2
NUP88-213ENST00000576862 CLPSL1A2RUU4 121 aa2.53□□□□□ -2
NUP88-213ENST00000576862 IBA57-AS1B1ANH7 110 aa2.53□□□□□ -2
NUP88-213ENST00000576862 IGKCP01834 107 aa2.53□□□□□ -2
NUP88-213ENST00000576862 IGLC2P0DOY2 106 aa2.53□□□□□ -2
NUP88-213ENST00000576862 IGLC3P0DOY3 106 aa2.53□□□□□ -2
NUP88-213ENST00000576862 CBLN1P23435 193 aa2.53□□□□□ -2
NUP88-213ENST00000576862 KRTDAPP60985 99 aa2.53□□□□□ -2
NUP88-213ENST00000576862 PMCHL2Q9BQD1 86 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms