RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 UBE2BP63146 152 aa10.85□□□□□ -0.67
CHD3-214ENST00000572579 ALKBH7Q9BT30 221 aaPredicted RBP10.85□□□□□ -0.67
CHD3-214ENST00000572579 C22orf24Q9Y442 160 aa10.85□□□□□ -0.67
CHD3-214ENST00000572579 TMEM218A2RU14 115 aa10.84□□□□□ -0.67
CHD3-214ENST00000572579 CKS1BP61024 79 aa10.84□□□□□ -0.67
CHD3-214ENST00000572579 LINC01546A6NGU7 62 aa10.83□□□□□ -0.68
CHD3-214ENST00000572579 PRSS2P07478 247 aa10.83□□□□□ -0.68
CHD3-214ENST00000572579 HERVK_113P63121 156 aa10.83□□□□□ -0.68
CHD3-214ENST00000572579 SMIM1B2RUZ4 78 aa10.81□□□□□ -0.68
CHD3-214ENST00000572579 ERASQ7Z444 233 aa10.81□□□□□ -0.68
CHD3-214ENST00000572579 SCGB3A1Q96QR1 104 aa10.81□□□□□ -0.68
CHD3-214ENST00000572579 IGLV1-50A0A075B6I6 118 aa10.8□□□□□ -0.68
CHD3-214ENST00000572579 IGLV5-45A0A087WSX0 123 aa10.8□□□□□ -0.68
CHD3-214ENST00000572579 F8VRH5 84 aa10.8□□□□□ -0.68
CHD3-214ENST00000572579 ZNF861PO60384 105 aa10.8□□□□□ -0.68
CHD3-214ENST00000572579 GEMIN7Q9H840 131 aaKnown RBP10.8□□□□□ -0.68
CHD3-214ENST00000572579 SEC11AP67812 179 aa10.79□□□□□ -0.68
CHD3-214ENST00000572579 UQCC3Q6UW78 93 aa10.79□□□□□ -0.68
CHD3-214ENST00000572579 CST9LQ9H4G1 147 aa10.79□□□□□ -0.68
CHD3-214ENST00000572579 TRAV9-1A0A075B6T8 112 aa10.78□□□□□ -0.68
CHD3-214ENST00000572579 TINCRA0A1B0GVN0 87 aa10.78□□□□□ -0.68
CHD3-214ENST00000572579 PAPPA-AS1Q5QFB9 102 aa10.78□□□□□ -0.68
CHD3-214ENST00000572579 GNB1LQ9BYB4 327 aa10.78□□□□□ -0.68
CHD3-214ENST00000572579 MUC2Q02817 5179 aa10.77□□□□□ -0.68
CHD3-214ENST00000572579 G0S2P27469 103 aa10.77□□□□□ -0.69
CHD3-214ENST00000572579 PDZD11Q5EBL8 140 aa10.76□□□□□ -0.69
CHD3-214ENST00000572579 COX7B2Q8TF08 81 aa10.75□□□□□ -0.69
CHD3-214ENST00000572579 TP73-AS1Q9UF72 201 aa10.75□□□□□ -0.69
CHD3-214ENST00000572579 SPINK8P0C7L1 97 aa10.74□□□□□ -0.69
CHD3-214ENST00000572579 LBHQ53QV2 105 aaPredicted RBP10.74□□□□□ -0.69
CHD3-214ENST00000572579 MRPL55Q7Z7F7 128 aaKnown RBP10.74□□□□□ -0.69
CHD3-214ENST00000572579 LINC00167Q96N53 147 aa10.74□□□□□ -0.69
CHD3-214ENST00000572579 SEC11CQ9BY50 192 aa10.74□□□□□ -0.69
CHD3-214ENST00000572579 A0A096LNJ9 63 aa10.73□□□□□ -0.69
CHD3-214ENST00000572579 NUPR1O60356 82 aa10.73□□□□□ -0.69
CHD3-214ENST00000572579 CXCL5P42830 114 aa10.73□□□□□ -0.69
CHD3-214ENST00000572579 URB1-AS1Q96HZ7 61 aa10.73□□□□□ -0.69
CHD3-214ENST00000572579 CARHSP1Q9Y2V2 147 aaKnown RBP10.73□□□□□ -0.69
CHD3-214ENST00000572579 RPL37AP8A6NKH3 93 aa10.72□□□□□ -0.69
CHD3-214ENST00000572579 C10orf91Q5T1B1 145 aa10.72□□□□□ -0.69
CHD3-214ENST00000572579 A0A087X002 238 aa10.71□□□□□ -0.69
CHD3-214ENST00000572579 RAB5BP61020 215 aa10.71□□□□□ -0.69
CHD3-214ENST00000572579 PMVKQ15126 192 aa10.71□□□□□ -0.69
CHD3-214ENST00000572579 MRPL18Q9H0U6 180 aaKnown RBP10.71□□□□□ -0.69
CHD3-214ENST00000572579 GAGE10A6NGK3 116 aa10.7□□□□□ -0.7
CHD3-214ENST00000572579 BCE1O60756 84 aa10.7□□□□□ -0.7
CHD3-214ENST00000572579 SCO1O75880 301 aa10.69□□□□□ -0.7
CHD3-214ENST00000572579 FABP9Q0Z7S8 132 aa10.69□□□□□ -0.7
CHD3-214ENST00000572579 KRTAP13-1Q8IUC0 172 aa10.69□□□□□ -0.7
CHD3-214ENST00000572579 ANAPC11Q9NYG5 84 aa10.69□□□□□ -0.7
CHD3-214ENST00000572579 IGLV5-37A0A075B6J1 123 aa10.68□□□□□ -0.7
CHD3-214ENST00000572579 S100PP25815 95 aa10.68□□□□□ -0.7
CHD3-214ENST00000572579 RPL13AP40429 203 aaKnown RBP10.68□□□□□ -0.7
CHD3-214ENST00000572579 FA2HQ7L5A8 372 aa10.68□□□□□ -0.7
CHD3-214ENST00000572579 COMMD7Q86VX2 200 aa10.68□□□□□ -0.7
CHD3-214ENST00000572579 IGLV5-39A0A0G2JS06 123 aa10.67□□□□□ -0.7
CHD3-214ENST00000572579 IGLC3P0DOY3 106 aa10.67□□□□□ -0.7
CHD3-214ENST00000572579 LINC01549A6NIU2 74 aa10.66□□□□□ -0.7
CHD3-214ENST00000572579 PRR4Q16378 134 aa10.65□□□□□ -0.7
CHD3-214ENST00000572579 Q8NDZ9 215 aa10.65□□□□□ -0.7
CHD3-214ENST00000572579 RPS10P5Q9NQ39 176 aa10.65□□□□□ -0.7
CHD3-214ENST00000572579 TSPAN13O95857 204 aa10.64□□□□□ -0.71
CHD3-214ENST00000572579 ZNF22P17026 224 aaPredicted RBP10.64□□□□□ -0.71
CHD3-214ENST00000572579 RPL28P46779 137 aaKnown RBP10.64□□□□□ -0.71
CHD3-214ENST00000572579 PMCHL1Q16048 86 aa10.64□□□□□ -0.71
CHD3-214ENST00000572579 COX19Q49B96 90 aa10.64□□□□□ -0.71
CHD3-214ENST00000572579 KRTAP13-2Q52LG2 175 aa10.63□□□□□ -0.71
CHD3-214ENST00000572579 C18orf32Q8TCD1 76 aa10.63□□□□□ -0.71
CHD3-214ENST00000572579 SMCO4Q9NRQ5 59 aa10.63□□□□□ -0.71
CHD3-214ENST00000572579 PFN2P35080 140 aa10.62□□□□□ -0.71
CHD3-214ENST00000572579 H3BRM9 83 aa10.61□□□□□ -0.71
CHD3-214ENST00000572579 ATP5LO75964 103 aa10.61□□□□□ -0.71
CHD3-214ENST00000572579 LINC00614P0C842 121 aa10.61□□□□□ -0.71
CHD3-214ENST00000572579 RHEBQ15382 184 aa10.61□□□□□ -0.71
CHD3-214ENST00000572579 VPREB1P12018 145 aa10.6□□□□□ -0.71
CHD3-214ENST00000572579 NDUFA6P56556 154 aa10.6□□□□□ -0.71
CHD3-214ENST00000572579 SND1-IT1Q9HBX3 110 aa10.6□□□□□ -0.71
CHD3-214ENST00000572579 IGKV2-28A0A075B6P5 120 aa10.59□□□□□ -0.71
CHD3-214ENST00000572579 C11orf86A6NJI1 115 aa10.59□□□□□ -0.71
CHD3-214ENST00000572579 IGKV2D-28P01615 120 aa10.59□□□□□ -0.71
CHD3-214ENST00000572579 CRYGAP11844 174 aa10.59□□□□□ -0.71
CHD3-214ENST00000572579 TRAPPC1Q9Y5R8 145 aa10.59□□□□□ -0.71
CHD3-214ENST00000572579 ZNF625Q96I27 306 aaPredicted RBP10.58□□□□□ -0.72
CHD3-214ENST00000572579 ERG28Q9UKR5 140 aa10.58□□□□□ -0.72
CHD3-214ENST00000572579 TMEM238C9JI98 176 aa10.57□□□□□ -0.72
CHD3-214ENST00000572579 NKAPP1Q8N9T2 125 aa10.57□□□□□ -0.72
CHD3-214ENST00000572579 TYMSOSQ8TAI1 123 aa10.57□□□□□ -0.72
CHD3-214ENST00000572579 HBDP02042 147 aa10.56□□□□□ -0.72
CHD3-214ENST00000572579 UBE2AP49459 152 aa10.55□□□□□ -0.72
CHD3-214ENST00000572579 PRLHP81277 87 aa10.55□□□□□ -0.72
CHD3-214ENST00000572579 BAGE3Q86Y29 109 aa10.55□□□□□ -0.72
CHD3-214ENST00000572579 M0R378 163 aa10.54□□□□□ -0.72
CHD3-214ENST00000572579 YPEL4Q96NS1 127 aa10.54□□□□□ -0.72
CHD3-214ENST00000572579 TMEM126AQ9H061 195 aa10.53□□□□□ -0.72
CHD3-214ENST00000572579 COX17Q14061 63 aa10.52□□□□□ -0.73
CHD3-214ENST00000572579 TMEM170BQ5T4T1 132 aa10.52□□□□□ -0.73
CHD3-214ENST00000572579 MUC17Q685J3 4493 aa10.51□□□□□ -0.73
CHD3-214ENST00000572579 FAM229BQ4G0N7 80 aa10.51□□□□□ -0.73
CHD3-214ENST00000572579 APOC3P02656 99 aa10.5□□□□□ -0.73
CHD3-214ENST00000572579 FAT4Q6V0I7 4981 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 152.6 ms