RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 C15orf53Q8NAA6 179 aa4.8□□□□□ -1.64
SMG1-215ENST00000568239 DNAH9Q9NYC9 4486 aa4.79□□□□□ -1.64
SMG1-215ENST00000568239 H7C2G1 150 aa4.79□□□□□ -1.64
SMG1-215ENST00000568239 PFN2P35080 140 aa4.79□□□□□ -1.64
SMG1-215ENST00000568239 CKS1BP61024 79 aa4.79□□□□□ -1.64
SMG1-215ENST00000568239 HERV-K104P63124 156 aa4.79□□□□□ -1.64
SMG1-215ENST00000568239 MIAQ16674 131 aa4.79□□□□□ -1.64
SMG1-215ENST00000568239 C2orf82Q6UX34 121 aa4.79□□□□□ -1.64
SMG1-215ENST00000568239 CFC1BP0CG36 223 aa4.79□□□□□ -1.64
SMG1-215ENST00000568239 CFC1P0CG37 223 aa4.79□□□□□ -1.64
SMG1-215ENST00000568239 CCL18P55774 89 aa4.79□□□□□ -1.64
SMG1-215ENST00000568239 LINC00158P58513 81 aa4.79□□□□□ -1.64
SMG1-215ENST00000568239 PRR34Q9NV39 138 aa4.79□□□□□ -1.64
SMG1-215ENST00000568239 FABP2P12104 132 aa4.78□□□□□ -1.64
SMG1-215ENST00000568239 FOXI1Q12951 378 aa4.78□□□□□ -1.64
SMG1-215ENST00000568239 LINC00526Q96FQ7 95 aa4.78□□□□□ -1.64
SMG1-215ENST00000568239 SPANXDQ9BXN6 97 aa4.78□□□□□ -1.64
SMG1-215ENST00000568239 Q9HAA7 133 aa4.78□□□□□ -1.64
SMG1-215ENST00000568239 SPANXCQ9NY87 97 aa4.78□□□□□ -1.64
SMG1-215ENST00000568239 A0A1W2PPM0 123 aa4.78□□□□□ -1.64
SMG1-215ENST00000568239 GAGE10A6NGK3 116 aa4.78□□□□□ -1.64
SMG1-215ENST00000568239 EIF4EBP3O60516 100 aaPredicted RBP4.78□□□□□ -1.64
SMG1-215ENST00000568239 TIMM17BO60830 172 aa4.78□□□□□ -1.64
SMG1-215ENST00000568239 LINC00588Q9Y4M8 146 aa4.78□□□□□ -1.64
SMG1-215ENST00000568239 A0A1B0GWB2 263 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 Q1RN00 199 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 IGKV2D-24A0A075B6R9 120 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.77□□□□□ -1.65
SMG1-215ENST00000568239 TRAV8-4A0A0B4J246 113 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 LOC107984156A0A0G2JMH3 177 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 UBE2V1Q13404 147 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 ARL17AQ8IVW1 177 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 Q8IZM0 81 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 MIR7-3HGQ8N6C7 128 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 LINC00308Q8TCZ7 52 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 PRO1854Q9UHT4 67 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 SPCS1Q9Y6A9 102 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 LINC01556Q5JQF7 62 aa4.77□□□□□ -1.65
SMG1-215ENST00000568239 SPAG11BQ08648 103 aa4.76□□□□□ -1.65
SMG1-215ENST00000568239 GTF2H5Q6ZYL4 71 aa4.76□□□□□ -1.65
SMG1-215ENST00000568239 TSPAN13O95857 204 aa4.76□□□□□ -1.65
SMG1-215ENST00000568239 IFITM1P13164 125 aa4.76□□□□□ -1.65
SMG1-215ENST00000568239 C6orf223Q8N319 242 aa4.76□□□□□ -1.65
SMG1-215ENST00000568239 ERG28Q9UKR5 140 aa4.76□□□□□ -1.65
SMG1-215ENST00000568239 TENM2Q9NT68 2774 aa4.75□□□□□ -1.65
SMG1-215ENST00000568239 PSMB2P49721 201 aa4.75□□□□□ -1.65
SMG1-215ENST00000568239 HIGD2BQ4VC39 106 aa4.75□□□□□ -1.65
SMG1-215ENST00000568239 SOSTDC1Q6X4U4 206 aa4.75□□□□□ -1.65
SMG1-215ENST00000568239 LINC01561Q8N1V8 128 aa4.75□□□□□ -1.65
SMG1-215ENST00000568239 IBA57-AS1B1ANH7 110 aa4.75□□□□□ -1.65
SMG1-215ENST00000568239 NHLRC4P0CG21 123 aaPredicted RBP4.75□□□□□ -1.65
SMG1-215ENST00000568239 SCGB1C2P0DMR2 95 aa4.75□□□□□ -1.65
SMG1-215ENST00000568239 KIAA0087Q14695 138 aa4.75□□□□□ -1.65
SMG1-215ENST00000568239 C9orf116Q5BN46 136 aaPredicted RBP4.75□□□□□ -1.65
SMG1-215ENST00000568239 COPS9Q8WXC6 57 aa4.75□□□□□ -1.65
SMG1-215ENST00000568239 PRKDCP78527 4128 aaKnown RBP4.75□□□□□ -1.65
SMG1-215ENST00000568239 A0A0B4J2C4 111 aa4.74□□□□□ -1.65
SMG1-215ENST00000568239 DNAH10OSP0CZ25 163 aa4.74□□□□□ -1.65
SMG1-215ENST00000568239 UBE2DNLQ8IWF7 75 aa4.74□□□□□ -1.65
SMG1-215ENST00000568239 K7EP34 96 aa4.74□□□□□ -1.65
SMG1-215ENST00000568239 UNQ6190/PRO20217Q6UXQ8 127 aa4.74□□□□□ -1.65
SMG1-215ENST00000568239 MEGF8Q7Z7M0 2845 aa4.74□□□□□ -1.65
SMG1-215ENST00000568239 CXCL5P42830 114 aa4.74□□□□□ -1.65
SMG1-215ENST00000568239 KLK5Q9Y337 293 aaPredicted RBP4.74□□□□□ -1.65
SMG1-215ENST00000568239 SEC61GP60059 68 aa4.73□□□□□ -1.65
SMG1-215ENST00000568239 C10orf25Q5T742 122 aa4.73□□□□□ -1.65
SMG1-215ENST00000568239 SND1-IT1Q9HBX3 110 aa4.73□□□□□ -1.65
SMG1-215ENST00000568239 LYSTQ99698 3801 aa4.73□□□□□ -1.65
SMG1-215ENST00000568239 H3BMG7 143 aa4.73□□□□□ -1.65
SMG1-215ENST00000568239 RPL13AP40429 203 aaKnown RBP4.73□□□□□ -1.65
SMG1-215ENST00000568239 MTURNQ8N3F0 131 aa4.72□□□□□ -1.65
SMG1-215ENST00000568239 CAMK2N2Q96S95 79 aa4.72□□□□□ -1.65
SMG1-215ENST00000568239 LYRM7Q5U5X0 104 aa4.71□□□□□ -1.66
SMG1-215ENST00000568239 KRTAP26-1Q6PEX3 210 aa4.71□□□□□ -1.66
SMG1-215ENST00000568239 APLNQ9ULZ1 77 aa4.71□□□□□ -1.66
SMG1-215ENST00000568239 CSMD3Q7Z407 3707 aa4.71□□□□□ -1.66
SMG1-215ENST00000568239 NUPR2A6NF83 97 aa4.71□□□□□ -1.66
SMG1-215ENST00000568239 NTN5Q8WTR8 489 aaPredicted RBP4.71□□□□□ -1.66
SMG1-215ENST00000568239 UPK3BQ9BT76 320 aa4.71□□□□□ -1.66
SMG1-215ENST00000568239 LECT2O14960 151 aa4.7□□□□□ -1.66
SMG1-215ENST00000568239 C15orf56Q8N910 161 aa4.7□□□□□ -1.66
SMG1-215ENST00000568239 OR13C6PQ8NH95 151 aa4.7□□□□□ -1.66
SMG1-215ENST00000568239 M0QXV9 152 aa4.7□□□□□ -1.66
SMG1-215ENST00000568239 TRIAP1O43715 76 aa4.7□□□□□ -1.66
SMG1-215ENST00000568239 COX6CP09669 75 aa4.7□□□□□ -1.66
SMG1-215ENST00000568239 COX17Q14061 63 aa4.7□□□□□ -1.66
SMG1-215ENST00000568239 TCL1BO95988 128 aa4.69□□□□□ -1.66
SMG1-215ENST00000568239 CASC10Q5T4H9 136 aa4.69□□□□□ -1.66
SMG1-215ENST00000568239 C6orf48Q9UBA6 75 aa4.69□□□□□ -1.66
SMG1-215ENST00000568239 TGP01266 2768 aa4.69□□□□□ -1.66
SMG1-215ENST00000568239 PRR3P79522 188 aaKnown RBP4.69□□□□□ -1.66
SMG1-215ENST00000568239 Q6ZRU5 148 aa4.69□□□□□ -1.66
SMG1-215ENST00000568239 LINC00337Q8N6G1 96 aa4.69□□□□□ -1.66
SMG1-215ENST00000568239 RMI2Q96E14 147 aa4.69□□□□□ -1.66
SMG1-215ENST00000568239 IGKV2-28A0A075B6P5 120 aa4.68□□□□□ -1.66
SMG1-215ENST00000568239 TRAV13-2A0A0B4J235 113 aa4.68□□□□□ -1.66
SMG1-215ENST00000568239 FAM229AH3BQW9 127 aa4.68□□□□□ -1.66
SMG1-215ENST00000568239 IGKV2D-28P01615 120 aa4.68□□□□□ -1.66
SMG1-215ENST00000568239 KRTAP21-3Q3LHN1 58 aa4.68□□□□□ -1.66
SMG1-215ENST00000568239 C5orf47Q569G3 176 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms