RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 C6orf226Q5I0X4 101 aa11.31□□□□□ -0.6
CLN3-221ENST00000566057 FA2HQ7L5A8 372 aa11.31□□□□□ -0.6
CLN3-221ENST00000566057 FAM19A5Q7Z5A7 132 aaPredicted RBP11.31□□□□□ -0.6
CLN3-221ENST00000566057 KRTAP11-1Q8IUC1 163 aa11.31□□□□□ -0.6
CLN3-221ENST00000566057 Q8IZM0 81 aa11.31□□□□□ -0.6
CLN3-221ENST00000566057 LINC01600Q96MT4 127 aa11.31□□□□□ -0.6
CLN3-221ENST00000566057 HMCN2Q8NDA2 5059 aa11.3□□□□□ -0.6
CLN3-221ENST00000566057 NDUFC2-KCTD14E9PQ53 114 aa11.3□□□□□ -0.6
CLN3-221ENST00000566057 CST9LQ9H4G1 147 aa11.3□□□□□ -0.6
CLN3-221ENST00000566057 LINC01549A6NIU2 74 aa11.29□□□□□ -0.6
CLN3-221ENST00000566057 CKS1BP61024 79 aa11.29□□□□□ -0.6
CLN3-221ENST00000566057 C9orf129Q5T035 196 aaKnown RBP11.29□□□□□ -0.6
CLN3-221ENST00000566057 URB1-AS1Q96HZ7 61 aa11.29□□□□□ -0.6
CLN3-221ENST00000566057 SMCO4Q9NRQ5 59 aa11.29□□□□□ -0.6
CLN3-221ENST00000566057 TRAPPC1Q9Y5R8 145 aa11.29□□□□□ -0.6
CLN3-221ENST00000566057 TINCRA0A1B0GVN0 87 aa11.28□□□□□ -0.6
CLN3-221ENST00000566057 LINC00469Q8N7U9 141 aa11.28□□□□□ -0.6
CLN3-221ENST00000566057 A0A096LNJ9 63 aa11.27□□□□□ -0.61
CLN3-221ENST00000566057 SMIM1B2RUZ4 78 aa11.27□□□□□ -0.61
CLN3-221ENST00000566057 C1orf137Q5JT78 98 aa11.27□□□□□ -0.61
CLN3-221ENST00000566057 C18orf32Q8TCD1 76 aa11.27□□□□□ -0.61
CLN3-221ENST00000566057 IGLV5-45A0A087WSX0 123 aa11.26□□□□□ -0.61
CLN3-221ENST00000566057 SNAPINO95295 136 aa11.26□□□□□ -0.61
CLN3-221ENST00000566057 PMVKQ15126 192 aa11.26□□□□□ -0.61
CLN3-221ENST00000566057 SVBPQ8N300 66 aa11.26□□□□□ -0.61
CLN3-221ENST00000566057 REG3GQ6UW15 175 aa11.25□□□□□ -0.61
CLN3-221ENST00000566057 PLA2G2DQ9UNK4 145 aa11.25□□□□□ -0.61
CLN3-221ENST00000566057 F8VRH5 84 aa11.24□□□□□ -0.61
CLN3-221ENST00000566057 M0QXV9 152 aa11.24□□□□□ -0.61
CLN3-221ENST00000566057 LINC00614P0C842 121 aa11.24□□□□□ -0.61
CLN3-221ENST00000566057 ODF1Q14990 250 aa11.24□□□□□ -0.61
CLN3-221ENST00000566057 PDZD11Q5EBL8 140 aa11.24□□□□□ -0.61
CLN3-221ENST00000566057 SPINK8P0C7L1 97 aa11.23□□□□□ -0.61
CLN3-221ENST00000566057 KRTAP10-8P60410 259 aa11.23□□□□□ -0.61
CLN3-221ENST00000566057 PMCHL1Q16048 86 aa11.23□□□□□ -0.61
CLN3-221ENST00000566057 NDUFA5Q16718 116 aa11.23□□□□□ -0.61
CLN3-221ENST00000566057 COX7B2Q8TF08 81 aa11.23□□□□□ -0.61
CLN3-221ENST00000566057 YPEL4Q96NS1 127 aa11.23□□□□□ -0.61
CLN3-221ENST00000566057 IGLV7-43P04211 117 aa11.22□□□□□ -0.61
CLN3-221ENST00000566057 XAGE1AQ9HD64 81 aa11.22□□□□□ -0.61
CLN3-221ENST00000566057 CXCL5P42830 114 aa11.2□□□□□ -0.62
CLN3-221ENST00000566057 HBDP02042 147 aa11.19□□□□□ -0.62
CLN3-221ENST00000566057 NDUFA6P56556 154 aa11.19□□□□□ -0.62
CLN3-221ENST00000566057 IGLC3P0DOY3 106 aa11.18□□□□□ -0.62
CLN3-221ENST00000566057 UBE2BP63146 152 aa11.18□□□□□ -0.62
CLN3-221ENST00000566057 C22orf24Q9Y442 160 aa11.17□□□□□ -0.62
CLN3-221ENST00000566057 RAB5BP61020 215 aa11.16□□□□□ -0.62
CLN3-221ENST00000566057 H3BRM9 83 aa11.15□□□□□ -0.62
CLN3-221ENST00000566057 DIRC1Q969H9 104 aa11.15□□□□□ -0.62
CLN3-221ENST00000566057 IGLV5-39A0A0G2JS06 123 aa11.14□□□□□ -0.63
CLN3-221ENST00000566057 ZNF22P17026 224 aaPredicted RBP11.14□□□□□ -0.63
CLN3-221ENST00000566057 ATP5LO75964 103 aa11.13□□□□□ -0.63
CLN3-221ENST00000566057 BAGE3Q86Y29 109 aa11.13□□□□□ -0.63
CLN3-221ENST00000566057 CBLN2Q8IUK8 224 aa11.13□□□□□ -0.63
CLN3-221ENST00000566057 C11orf86A6NJI1 115 aa11.12□□□□□ -0.63
CLN3-221ENST00000566057 H0Y9J4 135 aa11.12□□□□□ -0.63
CLN3-221ENST00000566057 LBHQ53QV2 105 aaPredicted RBP11.11□□□□□ -0.63
CLN3-221ENST00000566057 MRPL55Q7Z7F7 128 aaKnown RBP11.1□□□□□ -0.63
CLN3-221ENST00000566057 TP73-AS1Q9UF72 201 aa11.1□□□□□ -0.63
CLN3-221ENST00000566057 UBR4Q5T4S7 5183 aa11.1□□□□□ -0.63
CLN3-221ENST00000566057 SLC7A5P1Q8MH63 180 aa11.09□□□□□ -0.63
CLN3-221ENST00000566057 CHCHD1Q96BP2 118 aaKnown RBP11.09□□□□□ -0.63
CLN3-221ENST00000566057 PRR26Q8N8Z3 221 aa11.08□□□□□ -0.64
CLN3-221ENST00000566057 LINC00167Q96N53 147 aa11.08□□□□□ -0.64
CLN3-221ENST00000566057 KRTAP1-4P0C5Y4 121 aa11.07□□□□□ -0.64
CLN3-221ENST00000566057 PFN2P35080 140 aa11.07□□□□□ -0.64
CLN3-221ENST00000566057 TMEM170BQ5T4T1 132 aa11.07□□□□□ -0.64
CLN3-221ENST00000566057 CHTOPQ9Y3Y2 248 aaKnown RBP11.07□□□□□ -0.64
CLN3-221ENST00000566057 RPL37AP8A6NKH3 93 aa11.06□□□□□ -0.64
CLN3-221ENST00000566057 NUPR1O60356 82 aa11.05□□□□□ -0.64
CLN3-221ENST00000566057 ZNF861PO60384 105 aa11.05□□□□□ -0.64
CLN3-221ENST00000566057 IFI27L1Q96BM0 104 aa11.05□□□□□ -0.64
CLN3-221ENST00000566057 ZNF625Q96I27 306 aaPredicted RBP11.05□□□□□ -0.64
CLN3-221ENST00000566057 IGLV5-37A0A075B6J1 123 aa11.04□□□□□ -0.64
CLN3-221ENST00000566057 TRAV12-1A0A0B4J245 112 aa11.04□□□□□ -0.64
CLN3-221ENST00000566057 GAGE10A6NGK3 116 aa11.04□□□□□ -0.64
CLN3-221ENST00000566057 TRGC2P03986 189 aa11.04□□□□□ -0.64
CLN3-221ENST00000566057 FAM19A2Q8N3H0 131 aa11.04□□□□□ -0.64
CLN3-221ENST00000566057 ERG28Q9UKR5 140 aa11.04□□□□□ -0.64
CLN3-221ENST00000566057 LRP2P98164 4655 aa11.03□□□□□ -0.64
CLN3-221ENST00000566057 SCO1O75880 301 aa11.02□□□□□ -0.65
CLN3-221ENST00000566057 SND1-IT1Q9HBX3 110 aa11.02□□□□□ -0.65
CLN3-221ENST00000566057 TMEM223A0PJW6 202 aa11.01□□□□□ -0.65
CLN3-221ENST00000566057 BCE1O60756 84 aa11.01□□□□□ -0.65
CLN3-221ENST00000566057 HSBP1O75506 76 aa11.01□□□□□ -0.65
CLN3-221ENST00000566057 NKAPP1Q8N9T2 125 aa11.01□□□□□ -0.65
CLN3-221ENST00000566057 LINC00310P59036 64 aa11□□□□□ -0.65
CLN3-221ENST00000566057 COX17Q14061 63 aa11□□□□□ -0.65
CLN3-221ENST00000566057 IGLV1-50A0A075B6I6 118 aa10.99□□□□□ -0.65
CLN3-221ENST00000566057 VPREB1P12018 145 aa10.98□□□□□ -0.65
CLN3-221ENST00000566057 Q8NDZ9 215 aa10.98□□□□□ -0.65
CLN3-221ENST00000566057 COLCA2A8K830 154 aa10.97□□□□□ -0.65
CLN3-221ENST00000566057 SERF1AO75920 110 aa10.97□□□□□ -0.65
CLN3-221ENST00000566057 RPL28P46779 137 aaKnown RBP10.97□□□□□ -0.65
CLN3-221ENST00000566057 IGKV2-28A0A075B6P5 120 aa10.96□□□□□ -0.65
CLN3-221ENST00000566057 IGKV2D-28P01615 120 aa10.96□□□□□ -0.65
CLN3-221ENST00000566057 SFTA2Q6UW10 78 aa10.96□□□□□ -0.65
CLN3-221ENST00000566057 H0Y8G0 127 aa10.95□□□□□ -0.66
CLN3-221ENST00000566057 A0A0U1RRA0 63 aa10.94□□□□□ -0.66
CLN3-221ENST00000566057 KRTAP13-1Q8IUC0 172 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms