RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 NF1P21359 2839 aa9.74□□□□□ -0.85
VPS9D1-202ENST00000561976 HIST1H4AP62805 103 aaKnown RBP9.74□□□□□ -0.85
VPS9D1-202ENST00000561976 Q6JHZ5 121 aa9.74□□□□□ -0.85
VPS9D1-202ENST00000561976 C2orf48Q96LS8 159 aa9.74□□□□□ -0.85
VPS9D1-202ENST00000561976 NIPBLQ6KC79 2804 aaeCLIP9.73□□□□□ -0.85
VPS9D1-202ENST00000561976 RPL18AQ02543 176 aaKnown RBP9.73□□□□□ -0.85
VPS9D1-202ENST00000561976 CLPSL2Q6UWE3 100 aa9.73□□□□□ -0.85
VPS9D1-202ENST00000561976 A0A1B0GX51 115 aa9.73□□□□□ -0.85
VPS9D1-202ENST00000561976 CSNK1G2-AS1Q8NCQ2 148 aa9.73□□□□□ -0.85
VPS9D1-202ENST00000561976 A0A087WVE0 104 aa9.72□□□□□ -0.85
VPS9D1-202ENST00000561976 SS18Q15532 418 aa9.72□□□□□ -0.85
VPS9D1-202ENST00000561976 ZNF462Q96JM2 2506 aa9.72□□□□□ -0.85
VPS9D1-202ENST00000561976 hADV29S1A0JD25 119 aa9.71□□□□□ -0.85
VPS9D1-202ENST00000561976 FAM19A5Q7Z5A7 132 aaPredicted RBP9.71□□□□□ -0.85
VPS9D1-202ENST00000561976 ESM1Q9NQ30 184 aa9.71□□□□□ -0.86
VPS9D1-202ENST00000561976 LY6G6DO95868 133 aa9.7□□□□□ -0.86
VPS9D1-202ENST00000561976 GYPEP15421 78 aa9.7□□□□□ -0.86
VPS9D1-202ENST00000561976 PRR3P79522 188 aaKnown RBP9.7□□□□□ -0.86
VPS9D1-202ENST00000561976 C19orf73Q9NVV2 129 aa9.7□□□□□ -0.86
VPS9D1-202ENST00000561976 WIPF1O43516 503 aa9.7□□□□□ -0.86
VPS9D1-202ENST00000561976 CRYGAP11844 174 aa9.7□□□□□ -0.86
VPS9D1-202ENST00000561976 J3KT08 172 aa9.69□□□□□ -0.86
VPS9D1-202ENST00000561976 A0A096LPF7 62 aa9.69□□□□□ -0.86
VPS9D1-202ENST00000561976 IGLV1-51P01701 117 aa9.69□□□□□ -0.86
VPS9D1-202ENST00000561976 Q8IZM0 81 aa9.69□□□□□ -0.86
VPS9D1-202ENST00000561976 CCKP06307 115 aa9.68□□□□□ -0.86
VPS9D1-202ENST00000561976 AKAP9Q99996 3911 aa9.68□□□□□ -0.86
VPS9D1-202ENST00000561976 BBC3Q96PG8 261 aaPredicted RBP9.68□□□□□ -0.86
VPS9D1-202ENST00000561976 CCDC168Q8NDH2 2452 aa9.68□□□□□ -0.86
VPS9D1-202ENST00000561976 RNASE1P07998 156 aaKnown RBP9.67□□□□□ -0.86
VPS9D1-202ENST00000561976 LINC01561Q8N1V8 128 aa9.67□□□□□ -0.86
VPS9D1-202ENST00000561976 LINC01006Q8NI28 216 aa9.67□□□□□ -0.86
VPS9D1-202ENST00000561976 USP17L23D6RBM5 183 aa9.66□□□□□ -0.86
VPS9D1-202ENST00000561976 SERP2Q8N6R1 65 aa9.66□□□□□ -0.86
VPS9D1-202ENST00000561976 Q8N814 137 aa9.66□□□□□ -0.86
VPS9D1-202ENST00000561976 JMJD7-PLA2G4BH0Y9G9 81 aa9.66□□□□□ -0.86
VPS9D1-202ENST00000561976 FN1P02751 2386 aaKnown RBP9.65□□□□□ -0.86
VPS9D1-202ENST00000561976 KRTAP1-3Q8IUG1 177 aa9.65□□□□□ -0.86
VPS9D1-202ENST00000561976 CYSTM1Q9H1C7 97 aa9.65□□□□□ -0.86
VPS9D1-202ENST00000561976 ITPR3Q14573 2671 aa9.64□□□□□ -0.87
VPS9D1-202ENST00000561976 A0A1B0GUV1 79 aa9.64□□□□□ -0.87
VPS9D1-202ENST00000561976 TMEM256-PLSCR3K7ERE1 68 aa9.64□□□□□ -0.87
VPS9D1-202ENST00000561976 NANOS2P60321 138 aaKnown RBP9.64□□□□□ -0.87
VPS9D1-202ENST00000561976 WFDC11Q8NEX6 87 aa9.64□□□□□ -0.87
VPS9D1-202ENST00000561976 S100A7L2Q5SY68 101 aa9.64□□□□□ -0.87
VPS9D1-202ENST00000561976 IGLV10-54A0A075B6I4 117 aa9.63□□□□□ -0.87
VPS9D1-202ENST00000561976 NBPF19A0A087WUL8 3843 aa9.63□□□□□ -0.87
VPS9D1-202ENST00000561976 LINC00269Q8N2A0 174 aa9.63□□□□□ -0.87
VPS9D1-202ENST00000561976 KIR2DL5BQ8NHK3 375 aa9.63□□□□□ -0.87
VPS9D1-202ENST00000561976 LINC00167Q96N53 147 aa9.63□□□□□ -0.87
VPS9D1-202ENST00000561976 C9orf116Q5BN46 136 aaPredicted RBP9.62□□□□□ -0.87
VPS9D1-202ENST00000561976 WFDC9Q8NEX5 89 aa9.62□□□□□ -0.87
VPS9D1-202ENST00000561976 PRO0255Q9UI72 69 aa9.62□□□□□ -0.87
VPS9D1-202ENST00000561976 ZNF469Q96JG9 3925 aaPredicted RBP9.61□□□□□ -0.87
VPS9D1-202ENST00000561976 HILS1P60008 231 aa9.61□□□□□ -0.87
VPS9D1-202ENST00000561976 NDUFC2O95298 119 aa9.61□□□□□ -0.87
VPS9D1-202ENST00000561976 C6orf99Q4VX62 202 aa9.61□□□□□ -0.87
VPS9D1-202ENST00000561976 UBR5O95071 2799 aaPredicted RBP9.6□□□□□ -0.87
VPS9D1-202ENST00000561976 ANGP03950 147 aaKnown RBP9.6□□□□□ -0.87
VPS9D1-202ENST00000561976 COX17Q14061 63 aa9.6□□□□□ -0.87
VPS9D1-202ENST00000561976 KIAA0087Q14695 138 aa9.6□□□□□ -0.87
VPS9D1-202ENST00000561976 CD164L2Q6UWJ8 174 aa9.6□□□□□ -0.87
VPS9D1-202ENST00000561976 CHCHD10Q8WYQ3 142 aaPredicted RBP9.6□□□□□ -0.87
VPS9D1-202ENST00000561976 FLNAP21333 2647 aaKnown RBP9.6□□□□□ -0.87
VPS9D1-202ENST00000561976 APCP25054 2843 aa9.59□□□□□ -0.87
VPS9D1-202ENST00000561976 TRAV23DV6A0A075B6W5 121 aa9.59□□□□□ -0.87
VPS9D1-202ENST00000561976 UPK3BQ9BT76 320 aa9.59□□□□□ -0.87
VPS9D1-202ENST00000561976 ENHOQ6UWT2 76 aa9.58□□□□□ -0.88
VPS9D1-202ENST00000561976 ZNF843Q8N446 348 aa9.58□□□□□ -0.88
VPS9D1-202ENST00000561976 UBL5Q9BZL1 73 aa9.58□□□□□ -0.88
VPS9D1-202ENST00000561976 TMEM258P61165 79 aa9.58□□□□□ -0.88
VPS9D1-202ENST00000561976 FAM19A1Q7Z5A9 133 aa9.58□□□□□ -0.88
VPS9D1-202ENST00000561976 LINC00612Q8N6U2 182 aa9.58□□□□□ -0.88
VPS9D1-202ENST00000561976 GHRHP01286 108 aa9.58□□□□□ -0.88
VPS9D1-202ENST00000561976 ATP5EP2Q5VTU8 51 aa9.58□□□□□ -0.88
VPS9D1-202ENST00000561976 Q8N3U1 123 aa9.58□□□□□ -0.88
VPS9D1-202ENST00000561976 C16orf95Q9H693 158 aa9.58□□□□□ -0.88
VPS9D1-202ENST00000561976 REG3AQ06141 175 aa9.57□□□□□ -0.88
VPS9D1-202ENST00000561976 GCN1Q92616 2671 aaKnown RBP9.56□□□□□ -0.88
VPS9D1-202ENST00000561976 MTORP42345 2549 aa9.56□□□□□ -0.88
VPS9D1-202ENST00000561976 RPS28P62857 69 aaKnown RBP9.56□□□□□ -0.88
VPS9D1-202ENST00000561976 Q8NDZ9 215 aa9.56□□□□□ -0.88
VPS9D1-202ENST00000561976 X6R8D5 127 aa9.56□□□□□ -0.88
VPS9D1-202ENST00000561976 NBEAL2Q6ZNJ1 2754 aa9.56□□□□□ -0.88
VPS9D1-202ENST00000561976 LAMTOR3Q9UHA4 124 aa9.55□□□□□ -0.88
VPS9D1-202ENST00000561976 DEFB4AO15263 64 aa9.55□□□□□ -0.88
VPS9D1-202ENST00000561976 LINC00575Q6W349 94 aa9.55□□□□□ -0.88
VPS9D1-202ENST00000561976 IGHV4-28A0A0C4DH34 117 aa9.54□□□□□ -0.88
VPS9D1-202ENST00000561976 RBM3P98179 157 aaKnown RBP9.54□□□□□ -0.88
VPS9D1-202ENST00000561976 DPH3Q96FX2 82 aa9.54□□□□□ -0.88
VPS9D1-202ENST00000561976 DSCR8Q96T75 97 aa9.54□□□□□ -0.88
VPS9D1-202ENST00000561976 ACANP16112 2415 aa9.53□□□□□ -0.88
VPS9D1-202ENST00000561976 C6orf223Q8N319 242 aa9.53□□□□□ -0.88
VPS9D1-202ENST00000561976 UNQ6190/PRO20217Q6UXQ8 127 aa9.52□□□□□ -0.88
VPS9D1-202ENST00000561976 C10orf25Q5T742 122 aa9.52□□□□□ -0.89
VPS9D1-202ENST00000561976 HRCT1Q6UXD1 115 aa9.52□□□□□ -0.89
VPS9D1-202ENST00000561976 SPAG11BQ08648 103 aa9.52□□□□□ -0.89
VPS9D1-202ENST00000561976 LYPD5Q6UWN5 251 aa9.52□□□□□ -0.89
VPS9D1-202ENST00000561976 ZNF561-AS1K7EIQ3 104 aa9.51□□□□□ -0.89
VPS9D1-202ENST00000561976 Q6ZQT0 140 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms