RNA–Protein interactions for RNA: ENST00000561036.1

HDDC3-206, Transcript of HD domain containing 3, humanhuman

TSL 3

Gene HDDC3, Length 457 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-206ENST00000561036 CFAP161Q6P656 301 aa11.51□□□□□ -0.57
HDDC3-206ENST00000561036 KRTAP26-1Q6PEX3 210 aa11.51□□□□□ -0.57
HDDC3-206ENST00000561036 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.5□□□□□ -0.57
HDDC3-206ENST00000561036 CKS1BP61024 79 aa11.5□□□□□ -0.57
HDDC3-206ENST00000561036 C1orf43Q9BWL3 253 aa11.5□□□□□ -0.57
HDDC3-206ENST00000561036 A4D1N5 150 aa11.49□□□□□ -0.57
HDDC3-206ENST00000561036 K7ERJ3 54 aa11.48□□□□□ -0.57
HDDC3-206ENST00000561036 A0A0B4J2C4 111 aa11.47□□□□□ -0.57
HDDC3-206ENST00000561036 SPAG11BQ08648 103 aa11.47□□□□□ -0.57
HDDC3-206ENST00000561036 LINC00308Q8TCZ7 52 aa11.47□□□□□ -0.57
HDDC3-206ENST00000561036 RAB37Q96AX2 223 aa11.47□□□□□ -0.57
HDDC3-206ENST00000561036 CFC1BP0CG36 223 aa11.46□□□□□ -0.57
HDDC3-206ENST00000561036 CFC1P0CG37 223 aa11.46□□□□□ -0.57
HDDC3-206ENST00000561036 RMI2Q96E14 147 aa11.46□□□□□ -0.57
HDDC3-206ENST00000561036 COX17Q14061 63 aa11.45□□□□□ -0.58
HDDC3-206ENST00000561036 ERG28Q9UKR5 140 aa11.45□□□□□ -0.58
HDDC3-206ENST00000561036 IGKV2D-24A0A075B6R9 120 aa11.44□□□□□ -0.58
HDDC3-206ENST00000561036 LINC00158P58513 81 aa11.44□□□□□ -0.58
HDDC3-206ENST00000561036 DAND5Q8N907 189 aa11.44□□□□□ -0.58
HDDC3-206ENST00000561036 PRO1854Q9UHT4 67 aa11.44□□□□□ -0.58
HDDC3-206ENST00000561036 F8WDY8 70 aa11.43□□□□□ -0.58
HDDC3-206ENST00000561036 H3BUT2 72 aa11.43□□□□□ -0.58
HDDC3-206ENST00000561036 C2orf82Q6UX34 121 aa11.43□□□□□ -0.58
HDDC3-206ENST00000561036 UBE2DNLQ8IWF7 75 aa11.43□□□□□ -0.58
HDDC3-206ENST00000561036 MUC7Q8TAX7 377 aa11.43□□□□□ -0.58
HDDC3-206ENST00000561036 COL7A1Q02388 2944 aa11.42□□□□□ -0.58
HDDC3-206ENST00000561036 STAB2Q8WWQ8 2551 aa11.42□□□□□ -0.58
HDDC3-206ENST00000561036 A0A0U1RRA0 63 aa11.42□□□□□ -0.58
HDDC3-206ENST00000561036 MIR7-3HGQ8N6C7 128 aa11.42□□□□□ -0.58
HDDC3-206ENST00000561036 NTN5Q8WTR8 489 aaPredicted RBP11.42□□□□□ -0.58
HDDC3-206ENST00000561036 GVQW2A0A096LPI5 108 aaPredicted RBP11.41□□□□□ -0.58
HDDC3-206ENST00000561036 A0A1W2PPM0 123 aa11.41□□□□□ -0.58
HDDC3-206ENST00000561036 VAMP3Q15836 100 aa11.41□□□□□ -0.58
HDDC3-206ENST00000561036 NPC2P61916 151 aa11.4□□□□□ -0.58
HDDC3-206ENST00000561036 SOSTDC1Q6X4U4 206 aa11.4□□□□□ -0.58
HDDC3-206ENST00000561036 C2orf48Q96LS8 159 aa11.4□□□□□ -0.58
HDDC3-206ENST00000561036 Q9HAA7 133 aa11.4□□□□□ -0.58
HDDC3-206ENST00000561036 PGPEP1Q9NXJ5 209 aa11.4□□□□□ -0.58
HDDC3-206ENST00000561036 ZNF561-AS1K7EIQ3 104 aa11.39□□□□□ -0.59
HDDC3-206ENST00000561036 EIF4EBP3O60516 100 aaPredicted RBP11.39□□□□□ -0.59
HDDC3-206ENST00000561036 FABP2P12104 132 aa11.39□□□□□ -0.59
HDDC3-206ENST00000561036 PFN2P35080 140 aa11.39□□□□□ -0.59
HDDC3-206ENST00000561036 C15orf56Q8N910 161 aa11.39□□□□□ -0.59
HDDC3-206ENST00000561036 LOC107984156A0A0G2JMH3 177 aa11.38□□□□□ -0.59
HDDC3-206ENST00000561036 ARL17AQ8IVW1 177 aa11.38□□□□□ -0.59
HDDC3-206ENST00000561036 C6orf223Q8N319 242 aa11.38□□□□□ -0.59
HDDC3-206ENST00000561036 TSPAN13O95857 204 aa11.37□□□□□ -0.59
HDDC3-206ENST00000561036 UNQ6190/PRO20217Q6UXQ8 127 aa11.37□□□□□ -0.59
HDDC3-206ENST00000561036 DNHD1Q96M86 4753 aa11.37□□□□□ -0.59
HDDC3-206ENST00000561036 TRBV30A0A0K0K1B3 111 aa11.36□□□□□ -0.59
HDDC3-206ENST00000561036 UBE2V1Q13404 147 aa11.36□□□□□ -0.59
HDDC3-206ENST00000561036 GTF2H5Q6ZYL4 71 aa11.36□□□□□ -0.59
HDDC3-206ENST00000561036 NAA38Q9BRA0 125 aaKnown RBP11.36□□□□□ -0.59
HDDC3-206ENST00000561036 MEGF8Q7Z7M0 2845 aa11.36□□□□□ -0.59
HDDC3-206ENST00000561036 C10orf25Q5T742 122 aa11.35□□□□□ -0.59
HDDC3-206ENST00000561036 LYRM7Q5U5X0 104 aa11.35□□□□□ -0.59
HDDC3-206ENST00000561036 HIGD2BQ4VC39 106 aa11.34□□□□□ -0.59
HDDC3-206ENST00000561036 TTC32Q5I0X7 151 aa11.34□□□□□ -0.59
HDDC3-206ENST00000561036 CAMK2N2Q96S95 79 aa11.34□□□□□ -0.59
HDDC3-206ENST00000561036 SND1-IT1Q9HBX3 110 aa11.34□□□□□ -0.59
HDDC3-206ENST00000561036 GAGE10A6NGK3 116 aa11.33□□□□□ -0.6
HDDC3-206ENST00000561036 K7EP34 96 aa11.33□□□□□ -0.6
HDDC3-206ENST00000561036 LINC00526Q96FQ7 95 aa11.33□□□□□ -0.6
HDDC3-206ENST00000561036 SPCS1Q9Y6A9 102 aa11.33□□□□□ -0.6
HDDC3-206ENST00000561036 DYNC2H1Q8NCM8 4307 aaKnown RBP11.32□□□□□ -0.6
HDDC3-206ENST00000561036 C6orf48Q9UBA6 75 aa11.32□□□□□ -0.6
HDDC3-206ENST00000561036 TRAV13-2A0A0B4J235 113 aa11.31□□□□□ -0.6
HDDC3-206ENST00000561036 C9orf116Q5BN46 136 aaPredicted RBP11.31□□□□□ -0.6
HDDC3-206ENST00000561036 PRKDCP78527 4128 aaKnown RBP11.3□□□□□ -0.6
HDDC3-206ENST00000561036 NDUFC2O95298 119 aa11.3□□□□□ -0.6
HDDC3-206ENST00000561036 RPL13AP40429 203 aaKnown RBP11.3□□□□□ -0.6
HDDC3-206ENST00000561036 KRTAP1-5Q9BYS1 174 aa11.3□□□□□ -0.6
HDDC3-206ENST00000561036 USP17L23D6RBM5 183 aa11.29□□□□□ -0.6
HDDC3-206ENST00000561036 SYCNQ0VAF6 134 aa11.29□□□□□ -0.6
HDDC3-206ENST00000561036 Q1RN00 199 aa11.29□□□□□ -0.6
HDDC3-206ENST00000561036 RNF151Q2KHN1 245 aa11.29□□□□□ -0.6
HDDC3-206ENST00000561036 NBDYA0A0U1RRE5 68 aa11.28□□□□□ -0.6
HDDC3-206ENST00000561036 Q6ZRU5 148 aa11.28□□□□□ -0.6
HDDC3-206ENST00000561036 TRBV20-1A0A075B6N2 111 aa11.27□□□□□ -0.61
HDDC3-206ENST00000561036 IGKV2-28A0A075B6P5 120 aa11.27□□□□□ -0.61
HDDC3-206ENST00000561036 H7C2G1 150 aa11.27□□□□□ -0.61
HDDC3-206ENST00000561036 IGKV2D-28P01615 120 aa11.27□□□□□ -0.61
HDDC3-206ENST00000561036 PSMB2P49721 201 aa11.27□□□□□ -0.61
HDDC3-206ENST00000561036 CASC10Q5T4H9 136 aa11.26□□□□□ -0.61
HDDC3-206ENST00000561036 SCGB1C2P0DMR2 95 aa11.25□□□□□ -0.61
HDDC3-206ENST00000561036 WWC2-AS2Q96NR7 200 aa11.25□□□□□ -0.61
HDDC3-206ENST00000561036 NDUFC2-KCTD14E9PQ53 114 aa11.24□□□□□ -0.61
HDDC3-206ENST00000561036 COX6CP09669 75 aa11.24□□□□□ -0.61
HDDC3-206ENST00000561036 LINC00337Q8N6G1 96 aa11.24□□□□□ -0.61
HDDC3-206ENST00000561036 CARD19Q96LW7 228 aa11.24□□□□□ -0.61
HDDC3-206ENST00000561036 PSCAO43653 123 aa11.22□□□□□ -0.61
HDDC3-206ENST00000561036 TRIAP1O43715 76 aa11.22□□□□□ -0.61
HDDC3-206ENST00000561036 TLX1NBP0CAT3 122 aa11.22□□□□□ -0.61
HDDC3-206ENST00000561036 C14orf177Q52M58 125 aa11.22□□□□□ -0.61
HDDC3-206ENST00000561036 TRBV10-2A0A0K0K1G8 114 aa11.19□□□□□ -0.62
HDDC3-206ENST00000561036 TCL1BO95988 128 aa11.19□□□□□ -0.62
HDDC3-206ENST00000561036 RPL28P46779 137 aaKnown RBP11.19□□□□□ -0.62
HDDC3-206ENST00000561036 DNAH7Q8WXX0 4024 aa11.18□□□□□ -0.62
HDDC3-206ENST00000561036 SLPIP03973 132 aa11.18□□□□□ -0.62
HDDC3-206ENST00000561036 FBN3Q75N90 2809 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms