RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 HERVK_113P63121 156 aa6.18□□□□□ -1.42
LDLR-214ENST00000560628 PAPPA-AS1Q5QFB9 102 aa6.18□□□□□ -1.42
LDLR-214ENST00000560628 FAM19A3Q7Z5A8 133 aa6.18□□□□□ -1.42
LDLR-214ENST00000560628 Q8IZM0 81 aa6.18□□□□□ -1.42
LDLR-214ENST00000560628 XAGE1AQ9HD64 81 aa6.18□□□□□ -1.42
LDLR-214ENST00000560628 SEC11AP67812 179 aa6.17□□□□□ -1.42
LDLR-214ENST00000560628 IFITM2Q01629 132 aa6.17□□□□□ -1.42
LDLR-214ENST00000560628 ERASQ7Z444 233 aa6.17□□□□□ -1.42
LDLR-214ENST00000560628 TIMM17AQ99595 171 aa6.17□□□□□ -1.42
LDLR-214ENST00000560628 C22orf24Q9Y442 160 aa6.17□□□□□ -1.42
LDLR-214ENST00000560628 UQCC3Q6UW78 93 aa6.16□□□□□ -1.42
LDLR-214ENST00000560628 LRP2P98164 4655 aa6.15□□□□□ -1.42
LDLR-214ENST00000560628 TRAV9-1A0A075B6T8 112 aa6.15□□□□□ -1.42
LDLR-214ENST00000560628 F8VRH5 84 aa6.15□□□□□ -1.42
LDLR-214ENST00000560628 KRTAP1-4P0C5Y4 121 aa6.15□□□□□ -1.42
LDLR-214ENST00000560628 S100PP25815 95 aa6.15□□□□□ -1.42
LDLR-214ENST00000560628 GNB1LQ9BYB4 327 aa6.15□□□□□ -1.42
LDLR-214ENST00000560628 TINCRA0A1B0GVN0 87 aa6.14□□□□□ -1.43
LDLR-214ENST00000560628 SMIM1B2RUZ4 78 aa6.14□□□□□ -1.43
LDLR-214ENST00000560628 FABP9Q0Z7S8 132 aa6.14□□□□□ -1.43
LDLR-214ENST00000560628 LBHQ53QV2 105 aaPredicted RBP6.14□□□□□ -1.43
LDLR-214ENST00000560628 SEC11CQ9BY50 192 aa6.14□□□□□ -1.43
LDLR-214ENST00000560628 CST9LQ9H4G1 147 aa6.14□□□□□ -1.43
LDLR-214ENST00000560628 IGLV1-50A0A075B6I6 118 aa6.13□□□□□ -1.43
LDLR-214ENST00000560628 ZNF861PO60384 105 aa6.13□□□□□ -1.43
LDLR-214ENST00000560628 SPINK8P0C7L1 97 aa6.13□□□□□ -1.43
LDLR-214ENST00000560628 RAB5BP61020 215 aa6.13□□□□□ -1.43
LDLR-214ENST00000560628 PDZD11Q5EBL8 140 aa6.13□□□□□ -1.43
LDLR-214ENST00000560628 FA2HQ7L5A8 372 aa6.13□□□□□ -1.43
LDLR-214ENST00000560628 COX7B2Q8TF08 81 aa6.13□□□□□ -1.43
LDLR-214ENST00000560628 MRPL18Q9H0U6 180 aaKnown RBP6.13□□□□□ -1.43
LDLR-214ENST00000560628 LINC01546A6NGU7 62 aa6.12□□□□□ -1.43
LDLR-214ENST00000560628 RPL37AP8A6NKH3 93 aa6.12□□□□□ -1.43
LDLR-214ENST00000560628 CXCL5P42830 114 aa6.12□□□□□ -1.43
LDLR-214ENST00000560628 PMVKQ15126 192 aa6.12□□□□□ -1.43
LDLR-214ENST00000560628 MRPL55Q7Z7F7 128 aaKnown RBP6.12□□□□□ -1.43
LDLR-214ENST00000560628 COMMD7Q86VX2 200 aa6.12□□□□□ -1.43
LDLR-214ENST00000560628 SMCO4Q9NRQ5 59 aa6.12□□□□□ -1.43
LDLR-214ENST00000560628 IGLV5-45A0A087WSX0 123 aa6.11□□□□□ -1.43
LDLR-214ENST00000560628 GAGE10A6NGK3 116 aa6.11□□□□□ -1.43
LDLR-214ENST00000560628 LINC00167Q96N53 147 aa6.11□□□□□ -1.43
LDLR-214ENST00000560628 RPS10P5Q9NQ39 176 aa6.11□□□□□ -1.43
LDLR-214ENST00000560628 LINC01549A6NIU2 74 aa6.1□□□□□ -1.43
LDLR-214ENST00000560628 NUPR1O60356 82 aa6.1□□□□□ -1.43
LDLR-214ENST00000560628 NDUFA6P56556 154 aa6.1□□□□□ -1.43
LDLR-214ENST00000560628 COX19Q49B96 90 aa6.1□□□□□ -1.43
LDLR-214ENST00000560628 TP73-AS1Q9UF72 201 aa6.1□□□□□ -1.43
LDLR-214ENST00000560628 BCE1O60756 84 aa6.09□□□□□ -1.43
LDLR-214ENST00000560628 RNF213Q63HN8 5207 aa6.08□□□□□ -1.44
LDLR-214ENST00000560628 H3BRM9 83 aa6.08□□□□□ -1.44
LDLR-214ENST00000560628 PFN2P35080 140 aa6.08□□□□□ -1.44
LDLR-214ENST00000560628 RPL13AP40429 203 aaKnown RBP6.08□□□□□ -1.44
LDLR-214ENST00000560628 RPL28P46779 137 aaKnown RBP6.08□□□□□ -1.44
LDLR-214ENST00000560628 C10orf91Q5T1B1 145 aa6.08□□□□□ -1.44
LDLR-214ENST00000560628 CARHSP1Q9Y2V2 147 aaKnown RBP6.08□□□□□ -1.44
LDLR-214ENST00000560628 A0A096LNJ9 63 aa6.07□□□□□ -1.44
LDLR-214ENST00000560628 SCO1O75880 301 aa6.07□□□□□ -1.44
LDLR-214ENST00000560628 ATP5LO75964 103 aa6.07□□□□□ -1.44
LDLR-214ENST00000560628 TSPAN13O95857 204 aa6.07□□□□□ -1.44
LDLR-214ENST00000560628 LINC00614P0C842 121 aa6.07□□□□□ -1.44
LDLR-214ENST00000560628 RHEBQ15382 184 aa6.07□□□□□ -1.44
LDLR-214ENST00000560628 PMCHL1Q16048 86 aa6.07□□□□□ -1.44
LDLR-214ENST00000560628 PRR4Q16378 134 aa6.07□□□□□ -1.44
LDLR-214ENST00000560628 NKAPP1Q8N9T2 125 aa6.07□□□□□ -1.44
LDLR-214ENST00000560628 URB1-AS1Q96HZ7 61 aa6.07□□□□□ -1.44
LDLR-214ENST00000560628 TRAPPC1Q9Y5R8 145 aa6.07□□□□□ -1.44
LDLR-214ENST00000560628 IGLC3P0DOY3 106 aa6.06□□□□□ -1.44
LDLR-214ENST00000560628 ANAPC11Q9NYG5 84 aa6.06□□□□□ -1.44
LDLR-214ENST00000560628 IGLV5-37A0A075B6J1 123 aa6.05□□□□□ -1.44
LDLR-214ENST00000560628 A0A087X002 238 aa6.05□□□□□ -1.44
LDLR-214ENST00000560628 ZNF22P17026 224 aaPredicted RBP6.05□□□□□ -1.44
LDLR-214ENST00000560628 C18orf32Q8TCD1 76 aa6.05□□□□□ -1.44
LDLR-214ENST00000560628 ZNF625Q96I27 306 aaPredicted RBP6.05□□□□□ -1.44
LDLR-214ENST00000560628 LPAP08519 4548 aa6.04□□□□□ -1.44
LDLR-214ENST00000560628 IGKV2-28A0A075B6P5 120 aa6.04□□□□□ -1.44
LDLR-214ENST00000560628 IGLV5-39A0A0G2JS06 123 aa6.04□□□□□ -1.44
LDLR-214ENST00000560628 IGKV2D-28P01615 120 aa6.04□□□□□ -1.44
LDLR-214ENST00000560628 HBDP02042 147 aa6.04□□□□□ -1.44
LDLR-214ENST00000560628 UBE2AP49459 152 aa6.04□□□□□ -1.44
LDLR-214ENST00000560628 BAGE3Q86Y29 109 aa6.04□□□□□ -1.44
LDLR-214ENST00000560628 C11orf86A6NJI1 115 aa6.03□□□□□ -1.44
LDLR-214ENST00000560628 APOC3P02656 99 aa6.03□□□□□ -1.44
LDLR-214ENST00000560628 CRYGAP11844 174 aa6.03□□□□□ -1.44
LDLR-214ENST00000560628 TMEM170BQ5T4T1 132 aa6.03□□□□□ -1.44
LDLR-214ENST00000560628 TYMSOSQ8TAI1 123 aa6.03□□□□□ -1.44
LDLR-214ENST00000560628 SND1-IT1Q9HBX3 110 aa6.03□□□□□ -1.44
LDLR-214ENST00000560628 ERG28Q9UKR5 140 aa6.03□□□□□ -1.44
LDLR-214ENST00000560628 VPREB1P12018 145 aa6.02□□□□□ -1.45
LDLR-214ENST00000560628 KRTAP13-1Q8IUC0 172 aa6.02□□□□□ -1.45
LDLR-214ENST00000560628 TMEM238C9JI98 176 aa6.01□□□□□ -1.45
LDLR-214ENST00000560628 Q8NDZ9 215 aa6.01□□□□□ -1.45
LDLR-214ENST00000560628 SVIPQ8NHG7 77 aa6.01□□□□□ -1.45
LDLR-214ENST00000560628 PRLHP81277 87 aa6□□□□□ -1.45
LDLR-214ENST00000560628 RPL24P83731 157 aaKnown RBP6□□□□□ -1.45
LDLR-214ENST00000560628 KRTAP13-2Q52LG2 175 aa6□□□□□ -1.45
LDLR-214ENST00000560628 FAM19A1Q7Z5A9 133 aa6□□□□□ -1.45
LDLR-214ENST00000560628 CHTOPQ9Y3Y2 248 aaKnown RBP6□□□□□ -1.45
LDLR-214ENST00000560628 A0A0U1RRA0 63 aa5.99□□□□□ -1.45
LDLR-214ENST00000560628 SNAPINO95295 136 aa5.99□□□□□ -1.45
LDLR-214ENST00000560628 LINC00158P58513 81 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms