RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CNTLNQ9NXG0 1405 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 CSMD2Q7Z408 3487 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 PDCD11Q14690 1871 aaKnown RBP0.14□□□□□ -2.39
USP3-209ENST00000558925 SLIT1O75093 1534 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 MYO15AQ9UKN7 3530 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 ANKRD26Q9UPS8 1709 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 TRAV22A0A0B4J277 110 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 UBE2L5PA0A1B0GUS4 154 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 IGLC7A0M8Q6 106 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 TMEM218A2RU14 115 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 FAM24AA6NFZ4 105 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 ZNF815PA8K554 130 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 TMEM262E9PQX1 116 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 CHKB-CPT1BH3BT56 60 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 M0R135 149 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 M0R3E3 92 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 HMGN4O00479 90 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 SSSCA1O60232 199 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 CCL18P55774 89 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 UBE2L3P68036 154 aaKnown RBP0.14□□□□□ -2.39
USP3-209ENST00000558925 DCDP81605 110 aaKnown RBP0.14□□□□□ -2.39
USP3-209ENST00000558925 COX6A2Q02221 97 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 SPAG11BQ08648 103 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 Q0VG73 95 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 LELP1Q5T871 98 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 CFAP126Q5VTH2 177 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 SPAG11AQ6PDA7 123 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 SVBPQ8N300 66 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 MYOZ3Q8TDC0 251 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 AQP10Q96PS8 301 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 TCEAL7Q9BRU2 100 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 LINC00472Q9H8W2 130 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 CDC42SE2Q9NRR3 84 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 NDUFA4L2Q9NRX3 87 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 CCNB3Q8WWL7 1395 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 SHANK2Q9UPX8 1470 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 DNAH14Q0VDD8 3507 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 SCN7AQ01118 1682 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 XIRP2A4UGR9 3374 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 MAPKBP1O60336 1514 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 ARHGAP5Q13017 1502 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 LRRC37A3O60309 1634 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 LAMC1P11047 1609 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 MARF1Q9Y4F3 1742 aaKnown RBP0.13□□□□□ -2.39
USP3-209ENST00000558925 WNK3Q9BYP7 1800 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 TRIOO75962 3097 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 ATMQ13315 3056 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 CDH23Q9H251 3354 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 M0R143 59 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 GNGT2O14610 69 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 S100A8P05109 93 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 ASIPP42127 132 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 ATP5EP56381 51 aaPredicted RBP0.13□□□□□ -2.39
USP3-209ENST00000558925 UBE2D3P61077 147 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 PKIAP61925 76 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 GNG11P61952 73 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 UBE2D2P62837 147 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 UBA52P62987 128 aaKnown RBP0.13□□□□□ -2.39
USP3-209ENST00000558925 SEC11AP67812 179 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 HAMPP81172 84 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 UBE2DNLQ8IWF7 75 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 FAM223AQ8IWN6 122 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 ACBD7Q8N6N7 88 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 AMELXQ99217 191 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 MGST2Q99735 147 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 CYP4F30PQ9H0H9 118 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 NPVFQ9HCQ7 196 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 DYNLRB1Q9NP97 96 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 SCP2D1Q9UJQ7 156 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 LENEPQ9Y5L5 61 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 LINC01558Q9Y6Z2 57 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 ANKRD36BQ8N2N9 1353 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 IQSEC2Q5JU85 1478 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 MAGI1Q96QZ7 1491 aaPredicted RBP0.13□□□□□ -2.39
USP3-209ENST00000558925 MRC2Q9UBG0 1479 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 SMARCA2P51531 1590 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 MYOM1P52179 1685 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 KIF21AQ7Z4S6 1674 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 TOPAZ1Q8N9V7 1692 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 KDM3BQ7LBC6 1761 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 ADGRG4Q8IZF6 3080 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 FAT3Q8TDW7 4589 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 TACC2O95359 2948 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 ACACAQ13085 2346 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 GOLGA4Q13439 2230 aaKnown RBP0.13□□□□□ -2.39
USP3-209ENST00000558925 USF3Q68DE3 2245 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 SBF2Q86WG5 1849 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 ZNF609O15014 1411 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 VPS8Q8N3P4 1428 aa0.13□□□□□ -2.39
USP3-209ENST00000558925 USH2AO75445 5202 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 CHD7Q9P2D1 2997 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 URB1O60287 2271 aaKnown RBP0.12□□□□□ -2.39
USP3-209ENST00000558925 CUBNO60494 3623 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 LAMC3Q9Y6N6 1575 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 LRP1Q07954 4544 aaKnown RBP0.12□□□□□ -2.39
USP3-209ENST00000558925 ADGRL2O95490 1459 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 PXDNQ92626 1479 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 NRXN1Q9ULB1 1477 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 PRUNE2Q8WUY3 3088 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 A0A0G2JND7 137 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms