RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 TULP4Q9NRJ4 1543 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 CNOT1A5YKK6 2376 aaKnown RBP0.32□□□□□ -2.36
VPS13C-207ENST00000558919 HIVEP3Q5T1R4 2406 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 ANKRD36BQ8N2N9 1353 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 DNAH12Q6ZR08 3092 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 LAMA2P24043 3122 aaKnown RBP0.31□□□□□ -2.36
VPS13C-207ENST00000558919 CFAP47Q6ZTR5 3102 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 ABCA13Q86UQ4 5058 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 HYDINQ4G0P3 5121 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 PTPRZ1P23471 2315 aaPredicted RBP0.31□□□□□ -2.36
VPS13C-207ENST00000558919 PIEZO2Q9H5I5 2752 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 TNRC6CQ9HCJ0 1690 aaKnown RBP0.31□□□□□ -2.36
VPS13C-207ENST00000558919 PKD1L1Q8TDX9 2849 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 ABCC10Q5T3U5 1492 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 PCNTO95613 3336 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 SUPT6HQ7KZ85 1726 aaKnown RBP0.31□□□□□ -2.36
VPS13C-207ENST00000558919 IFT172Q9UG01 1749 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 C7orf77A4D0Y5 90 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 C10orf142B7Z368 130 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 SPINK1P00995 79 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 UQCRHP07919 91 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 FAUP35544 74 aaKnown RBP0.31□□□□□ -2.36
VPS13C-207ENST00000558919 PIGYQ3MUY2 71 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 Q5BKY6 102 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 SERP2Q8N6R1 65 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 TRGV9Q99603 122 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 LINC00846Q9NV44 126 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 KMT2CQ8NEZ4 4911 aaKnown RBP0.31□□□□□ -2.36
VPS13C-207ENST00000558919 MTORP42345 2549 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 NCOR2Q9Y618 2525 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 BPTFQ12830 3046 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 DIP2AQ14689 1571 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 MAP2P11137 1827 aaKnown RBP0.31□□□□□ -2.36
VPS13C-207ENST00000558919 USP9YO00507 2555 aaPredicted RBP0.31□□□□□ -2.36
VPS13C-207ENST00000558919 CELSR3Q9NYQ7 3312 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 ADCY10Q96PN6 1610 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 MAP3K4Q9Y6R4 1608 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 CELSR2Q9HCU4 2923 aa0.31□□□□□ -2.36
VPS13C-207ENST00000558919 MYH6P13533 1939 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 SHPRHQ149N8 1683 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 DNHD1Q96M86 4753 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 NSD3Q9BZ95 1437 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 RIF1Q5UIP0 2472 aaKnown RBP0.3□□□□□ -2.36
VPS13C-207ENST00000558919 TNCP24821 2201 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 SSPOA2VEC9 5147 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 NUP188Q5SRE5 1749 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 TLN2Q9Y4G6 2542 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 ADGRL2O95490 1459 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 POLA1P09884 1462 aaPredicted RBP0.3□□□□□ -2.36
VPS13C-207ENST00000558919 FYCO1Q9BQS8 1478 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 SIPA1L3O60292 1781 aaPredicted RBP0.3□□□□□ -2.36
VPS13C-207ENST00000558919 PRDM15P57071 1507 aaPredicted RBP0.3□□□□□ -2.36
VPS13C-207ENST00000558919 TRBV25-1A0A075B6N4 114 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 FXYD6-FXYD2A0A087WZ82 144 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 UQCRHLA0A096LP55 91 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 H7BZZ5 65 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 CFDP00746 253 aaPredicted RBP0.3□□□□□ -2.36
VPS13C-207ENST00000558919 PSMG4Q5JS54 123 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 Q8IZM0 81 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 DEFB123Q8N688 67 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 LINC01600Q96MT4 127 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 SNHG12Q9BXW3 62 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 Q9H521 79 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 UGGT1Q9NYU2 1555 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 BOD1L1Q8NFC6 3051 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 PREX2Q70Z35 1606 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 CROCC2H7BZ55 1655 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 ZC3H13Q5T200 1668 aaKnown RBP0.3□□□□□ -2.36
VPS13C-207ENST00000558919 CACNA1EQ15878 2313 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 LRRC37A2A6NM11 1700 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 TJP1Q07157 1748 aa0.3□□□□□ -2.36
VPS13C-207ENST00000558919 MARF1Q9Y4F3 1742 aaKnown RBP0.3□□□□□ -2.36
VPS13C-207ENST00000558919 GAPVD1Q14C86 1478 aa0.29□□□□□ -2.36
VPS13C-207ENST00000558919 MLH3Q9UHC1 1453 aa0.29□□□□□ -2.36
VPS13C-207ENST00000558919 HERC2O95714 4834 aa0.29□□□□□ -2.36
VPS13C-207ENST00000558919 TTC37Q6PGP7 1564 aa0.29□□□□□ -2.36
VPS13C-207ENST00000558919 DIP2CQ9Y2E4 1556 aa0.29□□□□□ -2.36
VPS13C-207ENST00000558919 TARBP1Q13395 1621 aaKnown RBP0.29□□□□□ -2.36
VPS13C-207ENST00000558919 SHROOM2Q13796 1616 aa0.29□□□□□ -2.36
VPS13C-207ENST00000558919 USP32Q8NFA0 1604 aa0.29□□□□□ -2.36
VPS13C-207ENST00000558919 A0A087WVE0 104 aa0.29□□□□□ -2.36
VPS13C-207ENST00000558919 ASIPP42127 132 aa0.29□□□□□ -2.36
VPS13C-207ENST00000558919 ZNF720Q7Z2F6 126 aa0.29□□□□□ -2.36
VPS13C-207ENST00000558919 FAT4Q6V0I7 4981 aa0.29□□□□□ -2.36
VPS13C-207ENST00000558919 FAM186AA6NE01 2351 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 NF1P21359 2839 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 SLIT1O75093 1534 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 KIAA0586Q9BVV6 1533 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 KDM5DQ9BY66 1539 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 DCAF1Q9Y4B6 1507 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 UNC80Q8N2C7 3258 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 SPTA1P02549 2419 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 IGF2RP11717 2491 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 NBEAQ8NFP9 2946 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 MGAM2Q2M2H8 2515 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 KIF14Q15058 1648 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 POLR1AO95602 1720 aaPredicted RBP0.28□□□□□ -2.36
VPS13C-207ENST00000558919 PRDM2Q13029 1718 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 PKD1L3Q7Z443 1732 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 PAPPA2Q9BXP8 1791 aa0.28□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms