RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 PYGO1Q9Y3Y4 419 aa6.75□□□□□ -1.33
CCDC88C-213ENST00000557455 KIAA0087Q14695 138 aa6.74□□□□□ -1.33
CCDC88C-213ENST00000557455 LINC00242Q5T6M2 205 aa6.74□□□□□ -1.33
CCDC88C-213ENST00000557455 GNB1LQ9BYB4 327 aa6.74□□□□□ -1.33
CCDC88C-213ENST00000557455 LPAP08519 4548 aa6.73□□□□□ -1.33
CCDC88C-213ENST00000557455 IGLV4-3A0A075B6K6 122 aa6.73□□□□□ -1.33
CCDC88C-213ENST00000557455 TRBV30A0A0K0K1B3 111 aa6.73□□□□□ -1.33
CCDC88C-213ENST00000557455 LOC389332A0A1B0GUA5 103 aa6.73□□□□□ -1.33
CCDC88C-213ENST00000557455 TEX43Q6ZNM6 134 aa6.73□□□□□ -1.33
CCDC88C-213ENST00000557455 KRTAP11-1Q8IUC1 163 aa6.73□□□□□ -1.33
CCDC88C-213ENST00000557455 PRR26Q8N8Z3 221 aa6.73□□□□□ -1.33
CCDC88C-213ENST00000557455 TMEM141Q96I45 108 aa6.73□□□□□ -1.33
CCDC88C-213ENST00000557455 MRPL18Q9H0U6 180 aaKnown RBP6.73□□□□□ -1.33
CCDC88C-213ENST00000557455 H0Y9J4 135 aa6.72□□□□□ -1.33
CCDC88C-213ENST00000557455 S100A2P29034 98 aa6.72□□□□□ -1.33
CCDC88C-213ENST00000557455 UBE2BP63146 152 aa6.72□□□□□ -1.33
CCDC88C-213ENST00000557455 C2orf82Q6UX34 121 aa6.72□□□□□ -1.33
CCDC88C-213ENST00000557455 PACRGQ96M98 296 aaPredicted RBP6.72□□□□□ -1.33
CCDC88C-213ENST00000557455 MAP1LC3AQ9H492 121 aa6.72□□□□□ -1.33
CCDC88C-213ENST00000557455 LAMTOR2Q9Y2Q5 125 aa6.72□□□□□ -1.33
CCDC88C-213ENST00000557455 PRSS47A8MTI9 375 aa6.71□□□□□ -1.34
CCDC88C-213ENST00000557455 NDUFC2-KCTD14E9PQ53 114 aa6.71□□□□□ -1.34
CCDC88C-213ENST00000557455 M0QXV9 152 aa6.71□□□□□ -1.34
CCDC88C-213ENST00000557455 UBE2D1P51668 147 aa6.71□□□□□ -1.34
CCDC88C-213ENST00000557455 COA6Q5JTJ3 125 aaKnown RBP6.71□□□□□ -1.34
CCDC88C-213ENST00000557455 LINC01561Q8N1V8 128 aa6.71□□□□□ -1.34
CCDC88C-213ENST00000557455 C2orf88Q9BSF0 95 aa6.71□□□□□ -1.34
CCDC88C-213ENST00000557455 CYSLTR1Q9Y271 337 aa6.71□□□□□ -1.34
CCDC88C-213ENST00000557455 C2orf66Q6UXQ4 117 aa6.7□□□□□ -1.34
CCDC88C-213ENST00000557455 Q6ZN92 141 aa6.7□□□□□ -1.34
CCDC88C-213ENST00000557455 KRTAP7-1Q8IUC3 87 aa6.7□□□□□ -1.34
CCDC88C-213ENST00000557455 PRSS2P07478 247 aa6.69□□□□□ -1.34
CCDC88C-213ENST00000557455 SMIM6P0DI80 62 aa6.69□□□□□ -1.34
CCDC88C-213ENST00000557455 C9orf129Q5T035 196 aaKnown RBP6.69□□□□□ -1.34
CCDC88C-213ENST00000557455 ZC2HC1BQ5TFG8 222 aa6.69□□□□□ -1.34
CCDC88C-213ENST00000557455 HIST3H2BBQ8N257 126 aa6.69□□□□□ -1.34
CCDC88C-213ENST00000557455 Q8N8P6 123 aa6.69□□□□□ -1.34
CCDC88C-213ENST00000557455 VCX2Q9H322 139 aa6.69□□□□□ -1.34
CCDC88C-213ENST00000557455 TOMM7Q9P0U1 55 aa6.69□□□□□ -1.34
CCDC88C-213ENST00000557455 IGLV1-50A0A075B6I6 118 aa6.68□□□□□ -1.34
CCDC88C-213ENST00000557455 CKS1BP61024 79 aa6.68□□□□□ -1.34
CCDC88C-213ENST00000557455 ORMDL2Q53FV1 153 aa6.68□□□□□ -1.34
CCDC88C-213ENST00000557455 LINC00173Q6ZV60 143 aa6.68□□□□□ -1.34
CCDC88C-213ENST00000557455 AMELXQ99217 191 aa6.68□□□□□ -1.34
CCDC88C-213ENST00000557455 NPSP0C0P6 89 aa6.67□□□□□ -1.34
CCDC88C-213ENST00000557455 KRTAP1-4P0C5Y4 121 aa6.67□□□□□ -1.34
CCDC88C-213ENST00000557455 PDZD11Q5EBL8 140 aa6.67□□□□□ -1.34
CCDC88C-213ENST00000557455 C6orf226Q5I0X4 101 aa6.67□□□□□ -1.34
CCDC88C-213ENST00000557455 LINC00518Q8N0U6 118 aa6.67□□□□□ -1.34
CCDC88C-213ENST00000557455 K7EMI3 77 aa6.66□□□□□ -1.34
CCDC88C-213ENST00000557455 FABP4P15090 132 aa6.66□□□□□ -1.34
CCDC88C-213ENST00000557455 BAGE3Q86Y29 109 aa6.66□□□□□ -1.34
CCDC88C-213ENST00000557455 Q8IZM0 81 aa6.66□□□□□ -1.34
CCDC88C-213ENST00000557455 C12orf57Q99622 126 aa6.66□□□□□ -1.34
CCDC88C-213ENST00000557455 ALKBH7Q9BT30 221 aaPredicted RBP6.66□□□□□ -1.34
CCDC88C-213ENST00000557455 IGIPA6NJ69 53 aa6.65□□□□□ -1.34
CCDC88C-213ENST00000557455 RPL13AP40429 203 aaKnown RBP6.65□□□□□ -1.34
CCDC88C-213ENST00000557455 HERVK_113P63121 156 aa6.65□□□□□ -1.34
CCDC88C-213ENST00000557455 PAPPA-AS1Q5QFB9 102 aa6.65□□□□□ -1.34
CCDC88C-213ENST00000557455 FAM19A3Q7Z5A8 133 aa6.65□□□□□ -1.34
CCDC88C-213ENST00000557455 LINC00469Q8N7U9 141 aa6.65□□□□□ -1.34
CCDC88C-213ENST00000557455 HIST1H2BLQ99880 126 aa6.65□□□□□ -1.34
CCDC88C-213ENST00000557455 NXT2Q9NPJ8 142 aaKnown RBP6.65□□□□□ -1.34
CCDC88C-213ENST00000557455 G0S2P27469 103 aa6.64□□□□□ -1.35
CCDC88C-213ENST00000557455 SEC11AP67812 179 aa6.64□□□□□ -1.35
CCDC88C-213ENST00000557455 XAGE1AQ9HD64 81 aa6.64□□□□□ -1.35
CCDC88C-213ENST00000557455 CDKN2A-AS1Q9UH64 79 aa6.64□□□□□ -1.35
CCDC88C-213ENST00000557455 C22orf24Q9Y442 160 aa6.64□□□□□ -1.35
CCDC88C-213ENST00000557455 NUPR1O60356 82 aa6.63□□□□□ -1.35
CCDC88C-213ENST00000557455 ZNF861PO60384 105 aa6.63□□□□□ -1.35
CCDC88C-213ENST00000557455 SERF1AO75920 110 aa6.63□□□□□ -1.35
CCDC88C-213ENST00000557455 KIAA1644Q3SXP7 199 aa6.63□□□□□ -1.35
CCDC88C-213ENST00000557455 LBHQ53QV2 105 aaPredicted RBP6.63□□□□□ -1.35
CCDC88C-213ENST00000557455 TIMM17AQ99595 171 aa6.63□□□□□ -1.35
CCDC88C-213ENST00000557455 GEMIN7Q9H840 131 aaKnown RBP6.63□□□□□ -1.35
CCDC88C-213ENST00000557455 F8VRH5 84 aa6.62□□□□□ -1.35
CCDC88C-213ENST00000557455 C18orf32Q8TCD1 76 aa6.62□□□□□ -1.35
CCDC88C-213ENST00000557455 PRR4Q16378 134 aa6.61□□□□□ -1.35
CCDC88C-213ENST00000557455 TOMM6Q96B49 74 aa6.61□□□□□ -1.35
CCDC88C-213ENST00000557455 HSBP1O75506 76 aa6.6□□□□□ -1.35
CCDC88C-213ENST00000557455 CXCL5P42830 114 aa6.6□□□□□ -1.35
CCDC88C-213ENST00000557455 ERASQ7Z444 233 aa6.6□□□□□ -1.35
CCDC88C-213ENST00000557455 MRPL55Q7Z7F7 128 aaKnown RBP6.6□□□□□ -1.35
CCDC88C-213ENST00000557455 SCGB3A1Q96QR1 104 aa6.6□□□□□ -1.35
CCDC88C-213ENST00000557455 TP73-AS1Q9UF72 201 aa6.6□□□□□ -1.35
CCDC88C-213ENST00000557455 LINC00310P59036 64 aa6.59□□□□□ -1.35
CCDC88C-213ENST00000557455 TINCRA0A1B0GVN0 87 aa6.58□□□□□ -1.36
CCDC88C-213ENST00000557455 SMIM1B2RUZ4 78 aa6.58□□□□□ -1.36
CCDC88C-213ENST00000557455 BCE1O60756 84 aa6.58□□□□□ -1.36
CCDC88C-213ENST00000557455 RPL28P46779 137 aaKnown RBP6.58□□□□□ -1.36
CCDC88C-213ENST00000557455 JOSD1Q15040 202 aaPredicted RBP6.58□□□□□ -1.36
CCDC88C-213ENST00000557455 PYY3Q5JQD4 70 aa6.58□□□□□ -1.36
CCDC88C-213ENST00000557455 COX7B2Q8TF08 81 aa6.58□□□□□ -1.36
CCDC88C-213ENST00000557455 CHCHD1Q96BP2 118 aaKnown RBP6.58□□□□□ -1.36
CCDC88C-213ENST00000557455 MUC2Q02817 5179 aa6.57□□□□□ -1.36
CCDC88C-213ENST00000557455 LINC01549A6NIU2 74 aa6.57□□□□□ -1.36
CCDC88C-213ENST00000557455 RPL37AP8A6NKH3 93 aa6.56□□□□□ -1.36
CCDC88C-213ENST00000557455 TSPAN13O95857 204 aa6.56□□□□□ -1.36
CCDC88C-213ENST00000557455 S100A12P80511 92 aa6.56□□□□□ -1.36
CCDC88C-213ENST00000557455 FA2HQ7L5A8 372 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms