RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	IGHV3OR16-9	A0A0B4J2B5	98 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	TRBV30	A0A0K0K1B3	111 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	FAM240B	A0A1B0GVZ2	78 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	SDHAF1	A6NFY7	115 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	INMT-MINDY4	F8WBC2	141 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	LYRM1	O43325	122 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	PET100	P0DJ07	73 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	CTRL	P40313	264 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	RPS20	P60866	119 aa	Known RBP	2.57	□□□□□ -2
SCFD1-223	ENST00000557076	S100A12	P80511	92 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	RIG	Q13278	110 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	KRTAP13-1	Q8IUC0	172 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	DAND5	Q8N907	189 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	STOML3	Q8TAV4	291 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	MRAP2	Q96G30	205 aa		2.57	□□□□□ -2
SCFD1-223	ENST00000557076	PACRG	Q96M98	296 aa	Predicted RBP	2.57	□□□□□ -2
SCFD1-223	ENST00000557076	IGLV8-61	A0A075B6I0	122 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	TRAV13-1	A0A0B4J241	112 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	TRBV6-5	A0A0K0K1A5	114 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	CTXND1	A0A1B0GTU2	59 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	UPK1B	O75841	260 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	IL7	P13232	177 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	AKR1C3	P42330	323 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	NDUFV3	P56181	108 aa	Known RBP	2.56	□□□□□ -2
SCFD1-223	ENST00000557076	H2BFS	P57053	126 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	SMAGP	Q0VAQ4	97 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	KIAA0087	Q14695	138 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	ZNF726P1	Q15940	193 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	LYZL1	Q6UWQ5	148 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076		Q8NBF4	154 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	ORAOV1	Q8WV07	137 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	CCDC32	Q9BV29	185 aa		2.56	□□□□□ -2
SCFD1-223	ENST00000557076	LOC105371267	A0A1B0GV96	52 aa		2.55	□□□□□ -2
SCFD1-223	ENST00000557076	CCDC160	A6NGH7	325 aa		2.55	□□□□□ -2
SCFD1-223	ENST00000557076	SPINK1	P00995	79 aa		2.55	□□□□□ -2
SCFD1-223	ENST00000557076	POLR2K	P53803	58 aa	Known RBP	2.55	□□□□□ -2
SCFD1-223	ENST00000557076	KRTAP6-3	Q3LI67	103 aa		2.55	□□□□□ -2
SCFD1-223	ENST00000557076	TMUB2	Q71RG4	321 aa		2.55	□□□□□ -2
SCFD1-223	ENST00000557076	MRPL55	Q7Z7F7	128 aa	Known RBP	2.55	□□□□□ -2
SCFD1-223	ENST00000557076	RPL39L	Q96EH5	51 aa	Known RBP	2.55	□□□□□ -2
SCFD1-223	ENST00000557076	CNFN	Q9BYD5	112 aa		2.55	□□□□□ -2
SCFD1-223	ENST00000557076	NDUFA12	Q9UI09	145 aa		2.55	□□□□□ -2
SCFD1-223	ENST00000557076	UBE2D4	Q9Y2X8	147 aa		2.55	□□□□□ -2
SCFD1-223	ENST00000557076	TRBV27	A0A0K0K1C4	114 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	C7orf77	A4D0Y5	90 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	PCP4L1	A6NKN8	68 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	ZNF727	A8MUV8	499 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	IFNA1	P01562	189 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	S100A1	P23297	94 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	UBE2A	P49459	152 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	PCOTH	Q58A44	107 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	C3orf22	Q8N5N4	141 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	C11orf52	Q96A22	123 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	PLEKHB2	Q96CS7	222 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	LINC00167	Q96N53	147 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	TIMM21	Q9BVV7	248 aa		2.54	□□□□□ -2
SCFD1-223	ENST00000557076	GEMIN7	Q9H840	131 aa	Known RBP	2.54	□□□□□ -2
SCFD1-223	ENST00000557076	RPL37AP8	A6NKH3	93 aa		2.53	□□□□□ -2
SCFD1-223	ENST00000557076		A8MU10	97 aa		2.53	□□□□□ -2
SCFD1-223	ENST00000557076	GATC	O43716	136 aa	Known RBP	2.53	□□□□□ -2
SCFD1-223	ENST00000557076	FOXA3	P55318	350 aa	Predicted RBP	2.53	□□□□□ -2
SCFD1-223	ENST00000557076	C2orf82	Q6UX34	121 aa		2.53	□□□□□ -2
SCFD1-223	ENST00000557076	COX6B2	Q6YFQ2	88 aa		2.53	□□□□□ -2
SCFD1-223	ENST00000557076	MARVELD1	Q9BSK0	173 aa		2.53	□□□□□ -2
SCFD1-223	ENST00000557076	GNB1L	Q9BYB4	327 aa		2.53	□□□□□ -2
SCFD1-223	ENST00000557076	RNASE7	Q9H1E1	156 aa	Known RBP	2.53	□□□□□ -2
SCFD1-223	ENST00000557076	ST20	Q9HBF5	79 aa		2.53	□□□□□ -2
SCFD1-223	ENST00000557076	LINC00846	Q9NV44	126 aa		2.53	□□□□□ -2
SCFD1-223	ENST00000557076	IGLV4-3	A0A075B6K6	122 aa		2.52	□□□□□ -2.01
SCFD1-223	ENST00000557076	RAB19	A4D1S5	217 aa		2.52	□□□□□ -2.01
SCFD1-223	ENST00000557076	RAB4A	P20338	218 aa		2.52	□□□□□ -2.01
SCFD1-223	ENST00000557076	CEBPG	P53567	150 aa		2.52	□□□□□ -2.01
SCFD1-223	ENST00000557076	RPS29	P62273	56 aa	Known RBP	2.52	□□□□□ -2.01
SCFD1-223	ENST00000557076	RNASE13	Q5GAN3	156 aa	Known RBP	2.52	□□□□□ -2.01
SCFD1-223	ENST00000557076	SMIM15	Q7Z3B0	74 aa		2.52	□□□□□ -2.01
SCFD1-223	ENST00000557076	SLC51B	Q86UW2	128 aa		2.52	□□□□□ -2.01
SCFD1-223	ENST00000557076	FAM19A2	Q8N3H0	131 aa		2.52	□□□□□ -2.01
SCFD1-223	ENST00000557076	TMEM242	Q9NWH2	141 aa		2.52	□□□□□ -2.01
SCFD1-223	ENST00000557076	MAP1LC3B2	A6NCE7	125 aa		2.51	□□□□□ -2.01
SCFD1-223	ENST00000557076	SLC25A20	O43772	301 aa		2.51	□□□□□ -2.01
SCFD1-223	ENST00000557076	RPL35	P42766	123 aa	Known RBP	2.51	□□□□□ -2.01
SCFD1-223	ENST00000557076	AKR1C8P	Q5T2L2	129 aa		2.51	□□□□□ -2.01
SCFD1-223	ENST00000557076	LINC01561	Q8N1V8	128 aa		2.51	□□□□□ -2.01
SCFD1-223	ENST00000557076		Q8N377	158 aa		2.51	□□□□□ -2.01
SCFD1-223	ENST00000557076	FAM104A	Q969W3	186 aa		2.51	□□□□□ -2.01
SCFD1-223	ENST00000557076	MAP1LC3B	Q9GZQ8	125 aa		2.51	□□□□□ -2.01
SCFD1-223	ENST00000557076	XAGE1A	Q9HD64	81 aa		2.51	□□□□□ -2.01
SCFD1-223	ENST00000557076	BORCS7-ASMT	A0A0B4J1R7	106 aa		2.5	□□□□□ -2.01
SCFD1-223	ENST00000557076	FCER1G	P30273	86 aa		2.5	□□□□□ -2.01
SCFD1-223	ENST00000557076	DEFA1	P59665	94 aa		2.5	□□□□□ -2.01
SCFD1-223	ENST00000557076	RPL32	P62910	135 aa	Known RBP	2.5	□□□□□ -2.01
SCFD1-223	ENST00000557076	MRPS36	P82909	103 aa	Known RBP	2.5	□□□□□ -2.01
SCFD1-223	ENST00000557076	NDUFA5	Q16718	116 aa		2.5	□□□□□ -2.01
SCFD1-223	ENST00000557076		Q6ZUT4	128 aa		2.5	□□□□□ -2.01
SCFD1-223	ENST00000557076	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.5	□□□□□ -2.01
SCFD1-223	ENST00000557076	MBD3L1	Q8WWY6	194 aa		2.5	□□□□□ -2.01
SCFD1-223	ENST00000557076	SMIM12	Q96EX1	92 aa		2.5	□□□□□ -2.01
SCFD1-223	ENST00000557076	OCR1	Q9BZK8	76 aa		2.5	□□□□□ -2.01
SCFD1-223	ENST00000557076	BIN3	Q9NQY0	253 aa		2.5	□□□□□ -2.01
SCFD1-223	ENST00000557076	TGIF2-C20orf24	A0A0A6YYL0	155 aa		2.49	□□□□□ -2.01

Retrieved 100 of 20,778 RNA–protein pairs in 123.2 ms