RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 COX6A2Q02221 97 aa8.2□□□□□ -1.1
SHMT2-212ENST00000554467 UQCRQO14949 82 aa8.2□□□□□ -1.1
SHMT2-212ENST00000554467 PRIMA1Q86XR5 153 aa8.2□□□□□ -1.1
SHMT2-212ENST00000554467 CELA1Q9UNI1 258 aa8.2□□□□□ -1.1
SHMT2-212ENST00000554467 TRBV6-4A0A1B0GX49 114 aa8.19□□□□□ -1.1
SHMT2-212ENST00000554467 KRTAP10-11P60412 298 aa8.19□□□□□ -1.1
SHMT2-212ENST00000554467 GYPEP15421 78 aa8.19□□□□□ -1.1
SHMT2-212ENST00000554467 MRPS36P82909 103 aaKnown RBP8.19□□□□□ -1.1
SHMT2-212ENST00000554467 UBE2L6O14933 153 aa8.19□□□□□ -1.1
SHMT2-212ENST00000554467 HTN3P15516 51 aa8.19□□□□□ -1.1
SHMT2-212ENST00000554467 RETNQ9HD89 108 aa8.19□□□□□ -1.1
SHMT2-212ENST00000554467 APOC4P55056 127 aa8.18□□□□□ -1.1
SHMT2-212ENST00000554467 IMUPQ9GZP8 106 aa8.18□□□□□ -1.1
SHMT2-212ENST00000554467 TMEM243Q9BU79 118 aa8.18□□□□□ -1.1
SHMT2-212ENST00000554467 IGHV1-58A0A0C4DH39 117 aa8.17□□□□□ -1.1
SHMT2-212ENST00000554467 J3KT08 172 aa8.17□□□□□ -1.1
SHMT2-212ENST00000554467 OXTP01178 125 aa8.17□□□□□ -1.1
SHMT2-212ENST00000554467 SDIM1Q6ZPB5 146 aa8.17□□□□□ -1.1
SHMT2-212ENST00000554467 A0A1B0GX51 115 aa8.17□□□□□ -1.1
SHMT2-212ENST00000554467 WIPF1O43516 503 aa8.17□□□□□ -1.1
SHMT2-212ENST00000554467 KIR2DL5BQ8NHK3 375 aa8.17□□□□□ -1.1
SHMT2-212ENST00000554467 VSIG2Q96IQ7 327 aa8.16□□□□□ -1.1
SHMT2-212ENST00000554467 C22orf24Q9Y442 160 aa8.16□□□□□ -1.1
SHMT2-212ENST00000554467 Q9H8V8 135 aa8.16□□□□□ -1.1
SHMT2-212ENST00000554467 IGLV4-60A0A075B6I1 120 aa8.16□□□□□ -1.1
SHMT2-212ENST00000554467 TINCRA0A1B0GVN0 87 aa8.16□□□□□ -1.1
SHMT2-212ENST00000554467 LINC00242Q5T6M2 205 aa8.16□□□□□ -1.1
SHMT2-212ENST00000554467 C5orf38Q86SI9 138 aa8.16□□□□□ -1.1
SHMT2-212ENST00000554467 PRB2P02812 416 aaPredicted RBP8.15□□□□□ -1.1
SHMT2-212ENST00000554467 CDC42SE2Q9NRR3 84 aa8.15□□□□□ -1.1
SHMT2-212ENST00000554467 TOMM7Q9P0U1 55 aa8.15□□□□□ -1.1
SHMT2-212ENST00000554467 COX7CP15954 63 aa8.15□□□□□ -1.1
SHMT2-212ENST00000554467 TRBV6-8A0A0A6YYG3 113 aa8.15□□□□□ -1.11
SHMT2-212ENST00000554467 DAD1P61803 113 aa8.15□□□□□ -1.11
SHMT2-212ENST00000554467 Q8NAQ8 132 aa8.15□□□□□ -1.11
SHMT2-212ENST00000554467 hADV29S1A0JD25 119 aa8.14□□□□□ -1.11
SHMT2-212ENST00000554467 CLPSL2Q6UWE3 100 aa8.14□□□□□ -1.11
SHMT2-212ENST00000554467 LINC00612Q8N6U2 182 aa8.14□□□□□ -1.11
SHMT2-212ENST00000554467 PAX4O43316 350 aa8.13□□□□□ -1.11
SHMT2-212ENST00000554467 COX6CP09669 75 aa8.13□□□□□ -1.11
SHMT2-212ENST00000554467 CRYGAP11844 174 aa8.13□□□□□ -1.11
SHMT2-212ENST00000554467 Q8N3U1 123 aa8.13□□□□□ -1.11
SHMT2-212ENST00000554467 RPS28P62857 69 aaKnown RBP8.13□□□□□ -1.11
SHMT2-212ENST00000554467 LINC00643Q86TS7 51 aa8.13□□□□□ -1.11
SHMT2-212ENST00000554467 F5H768 121 aa8.13□□□□□ -1.11
SHMT2-212ENST00000554467 HIST1H4AP62805 103 aaKnown RBP8.13□□□□□ -1.11
SHMT2-212ENST00000554467 C4orf26Q17RF5 130 aa8.13□□□□□ -1.11
SHMT2-212ENST00000554467 SPANXDQ9BXN6 97 aa8.13□□□□□ -1.11
SHMT2-212ENST00000554467 SPANXCQ9NY87 97 aa8.13□□□□□ -1.11
SHMT2-212ENST00000554467 PRO0255Q9UI72 69 aa8.13□□□□□ -1.11
SHMT2-212ENST00000554467 CIRBPQ14011 172 aaKnown RBP8.12□□□□□ -1.11
SHMT2-212ENST00000554467 MIAQ16674 131 aa8.12□□□□□ -1.11
SHMT2-212ENST00000554467 LYRM9A8MSI8 78 aa8.12□□□□□ -1.11
SHMT2-212ENST00000554467 ACYP1P07311 99 aa8.12□□□□□ -1.11
SHMT2-212ENST00000554467 GAGE2AQ6NT46 116 aa8.12□□□□□ -1.11
SHMT2-212ENST00000554467 DPH3Q96FX2 82 aa8.12□□□□□ -1.11
SHMT2-212ENST00000554467 C11orf68Q9H3H3 251 aaKnown RBP8.12□□□□□ -1.11
SHMT2-212ENST00000554467 DNAH3Q8TD57 4116 aa8.1□□□□□ -1.11
SHMT2-212ENST00000554467 MIFP14174 115 aa8.09□□□□□ -1.11
SHMT2-212ENST00000554467 Q5XG85 94 aa8.09□□□□□ -1.11
SHMT2-212ENST00000554467 TIRAPP58753 221 aa8.09□□□□□ -1.11
SHMT2-212ENST00000554467 SMIM1B2RUZ4 78 aa8.09□□□□□ -1.12
SHMT2-212ENST00000554467 ATP5G1P05496 136 aa8.08□□□□□ -1.12
SHMT2-212ENST00000554467 SPART-AS1P0CW21 52 aa8.08□□□□□ -1.12
SHMT2-212ENST00000554467 CXCL5P42830 114 aa8.08□□□□□ -1.12
SHMT2-212ENST00000554467 DSCR8Q96T75 97 aa8.08□□□□□ -1.12
SHMT2-212ENST00000554467 UPK3BQ9BT76 320 aa8.08□□□□□ -1.12
SHMT2-212ENST00000554467 IGLV5-45A0A087WSX0 123 aa8.08□□□□□ -1.12
SHMT2-212ENST00000554467 OR13C6PQ8NH95 151 aa8.07□□□□□ -1.12
SHMT2-212ENST00000554467 FAM218AQ96MZ4 157 aa8.07□□□□□ -1.12
SHMT2-212ENST00000554467 XCL1P47992 114 aa8.06□□□□□ -1.12
SHMT2-212ENST00000554467 C9orf129Q5T035 196 aaKnown RBP8.06□□□□□ -1.12
SHMT2-212ENST00000554467 HRCT1Q6UXD1 115 aa8.06□□□□□ -1.12
SHMT2-212ENST00000554467 LINC00308Q8TCZ7 52 aa8.06□□□□□ -1.12
SHMT2-212ENST00000554467 IGLV10-54A0A075B6I4 117 aa8.05□□□□□ -1.12
SHMT2-212ENST00000554467 TRACP01848 142 aa8.05□□□□□ -1.12
SHMT2-212ENST00000554467 NDUFA1O15239 70 aa8.05□□□□□ -1.12
SHMT2-212ENST00000554467 PFN2P35080 140 aa8.05□□□□□ -1.12
SHMT2-212ENST00000554467 IGLV5-39A0A0G2JS06 123 aa8.04□□□□□ -1.12
SHMT2-212ENST00000554467 COX7A2LO14548 114 aa8.04□□□□□ -1.12
SHMT2-212ENST00000554467 STAB2Q8WWQ8 2551 aa8.04□□□□□ -1.12
SHMT2-212ENST00000554467 COL7A1Q02388 2944 aa8.04□□□□□ -1.12
SHMT2-212ENST00000554467 BAALC-AS2P0C853 105 aa8.04□□□□□ -1.12
SHMT2-212ENST00000554467 EGFEM1PQ0D2K5 195 aa8.04□□□□□ -1.12
SHMT2-212ENST00000554467 A0A087WVE0 104 aa8.04□□□□□ -1.12
SHMT2-212ENST00000554467 LINC00158P58513 81 aa8.04□□□□□ -1.12
SHMT2-212ENST00000554467 SOSTDC1Q6X4U4 206 aa8.04□□□□□ -1.12
SHMT2-212ENST00000554467 LINC00269Q8N2A0 174 aa8.04□□□□□ -1.12
SHMT2-212ENST00000554467 MRAPQ8TCY5 172 aa8.03□□□□□ -1.12
SHMT2-212ENST00000554467 LINC00959A0A1B0GUT2 108 aa8.03□□□□□ -1.12
SHMT2-212ENST00000554467 ATOX1O00244 68 aa8.03□□□□□ -1.12
SHMT2-212ENST00000554467 Q6ZTC4 211 aa8.03□□□□□ -1.12
SHMT2-212ENST00000554467 ANGP03950 147 aaKnown RBP8.02□□□□□ -1.13
SHMT2-212ENST00000554467 A0A0J9YWU9 116 aa8.02□□□□□ -1.13
SHMT2-212ENST00000554467 RPL18AQ02543 176 aaKnown RBP8.02□□□□□ -1.13
SHMT2-212ENST00000554467 FAM19A3Q7Z5A8 133 aa8.02□□□□□ -1.13
SHMT2-212ENST00000554467 Q9HAA7 133 aa8.02□□□□□ -1.13
SHMT2-212ENST00000554467 LINC01561Q8N1V8 128 aa8.01□□□□□ -1.13
SHMT2-212ENST00000554467 IGHV3OR16-9A0A0B4J2B5 98 aa8.01□□□□□ -1.13
SHMT2-212ENST00000554467 IGKV3D-7A0A0C4DH55 119 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 885.5 ms