RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 A0A1W2PPR1 153 aa6.63□□□□□ -1.35
PTCH1-220ENST00000550136 C16orf90A8MZG2 172 aa6.63□□□□□ -1.35
PTCH1-220ENST00000550136 MEGF8Q7Z7M0 2845 aa6.63□□□□□ -1.35
PTCH1-220ENST00000550136 TRBV6-5A0A0K0K1A5 114 aa6.62□□□□□ -1.35
PTCH1-220ENST00000550136 IGFL4Q6B9Z1 124 aa6.62□□□□□ -1.35
PTCH1-220ENST00000550136 ZNRF1Q8ND25 227 aa6.62□□□□□ -1.35
PTCH1-220ENST00000550136 ZNRD1Q9P1U0 126 aa6.62□□□□□ -1.35
PTCH1-220ENST00000550136 PRAC2D3DTV9 90 aa6.62□□□□□ -1.35
PTCH1-220ENST00000550136 PLXNB1O43157 2135 aa6.62□□□□□ -1.35
PTCH1-220ENST00000550136 CCL3P10147 92 aa6.62□□□□□ -1.35
PTCH1-220ENST00000550136 LINC01547P58512 204 aaPredicted RBP6.62□□□□□ -1.35
PTCH1-220ENST00000550136 KIF25-AS1Q9Y6Z4 181 aa6.62□□□□□ -1.35
PTCH1-220ENST00000550136 IGKV2-29A2NJV5 120 aaPredicted RBP6.61□□□□□ -1.35
PTCH1-220ENST00000550136 SRRM5B3KS81 715 aa6.61□□□□□ -1.35
PTCH1-220ENST00000550136 CXCL6P80162 114 aa6.61□□□□□ -1.35
PTCH1-220ENST00000550136 LINC01356Q8N9X3 169 aa6.61□□□□□ -1.35
PTCH1-220ENST00000550136 C20orf203Q8NBC4 194 aa6.61□□□□□ -1.35
PTCH1-220ENST00000550136 SMAD5-AS1Q9Y6J3 95 aa6.61□□□□□ -1.35
PTCH1-220ENST00000550136 IGHV1OR15-1A0A075B7D0 117 aa6.61□□□□□ -1.35
PTCH1-220ENST00000550136 APELAP0DMC3 54 aa6.61□□□□□ -1.35
PTCH1-220ENST00000550136 LINC00315P59091 139 aa6.61□□□□□ -1.35
PTCH1-220ENST00000550136 DEFB104AQ8WTQ1 72 aa6.61□□□□□ -1.35
PTCH1-220ENST00000550136 CCL19Q99731 98 aa6.61□□□□□ -1.35
PTCH1-220ENST00000550136 RFPL3SP0C7P2 107 aa6.6□□□□□ -1.35
PTCH1-220ENST00000550136 SUMO4Q6EEV6 95 aa6.6□□□□□ -1.35
PTCH1-220ENST00000550136 FAM19A3Q7Z5A8 133 aa6.6□□□□□ -1.35
PTCH1-220ENST00000550136 DNAJC13O75165 2243 aa6.6□□□□□ -1.35
PTCH1-220ENST00000550136 K7EIM0 57 aa6.6□□□□□ -1.35
PTCH1-220ENST00000550136 CCL24O00175 119 aa6.6□□□□□ -1.35
PTCH1-220ENST00000550136 Q5VV11 94 aa6.6□□□□□ -1.35
PTCH1-220ENST00000550136 LECT2O14960 151 aa6.59□□□□□ -1.35
PTCH1-220ENST00000550136 CRPP02741 224 aa6.59□□□□□ -1.35
PTCH1-220ENST00000550136 S100A4P26447 101 aaKnown RBP6.59□□□□□ -1.35
PTCH1-220ENST00000550136 SEM1Q6ZVN7 128 aa6.59□□□□□ -1.35
PTCH1-220ENST00000550136 LRCOL1A6NCL2 159 aa6.59□□□□□ -1.35
PTCH1-220ENST00000550136 NKAPP1Q8N9T2 125 aa6.59□□□□□ -1.35
PTCH1-220ENST00000550136 C1orf64Q8NEQ6 169 aa6.59□□□□□ -1.35
PTCH1-220ENST00000550136 SPTSSBQ8NFR3 76 aa6.59□□□□□ -1.35
PTCH1-220ENST00000550136 CADP27708 2225 aa6.59□□□□□ -1.36
PTCH1-220ENST00000550136 PINLYPA6NC86 204 aa6.58□□□□□ -1.36
PTCH1-220ENST00000550136 TTTY12Q9BZ98 90 aa6.58□□□□□ -1.36
PTCH1-220ENST00000550136 CCL17Q92583 94 aa6.58□□□□□ -1.36
PTCH1-220ENST00000550136 RPL11P62913 178 aaKnown RBP6.57□□□□□ -1.36
PTCH1-220ENST00000550136 ESM1Q9NQ30 184 aa6.57□□□□□ -1.36
PTCH1-220ENST00000550136 HCG22E2RYF7 251 aa6.57□□□□□ -1.36
PTCH1-220ENST00000550136 SMIM11BQ8TCY0 68 aa6.57□□□□□ -1.36
PTCH1-220ENST00000550136 BPY2O14599 106 aa6.56□□□□□ -1.36
PTCH1-220ENST00000550136 LINC00167Q96N53 147 aa6.56□□□□□ -1.36
PTCH1-220ENST00000550136 PSCAO43653 123 aa6.55□□□□□ -1.36
PTCH1-220ENST00000550136 HAMPP81172 84 aa6.55□□□□□ -1.36
PTCH1-220ENST00000550136 FAM104AQ969W3 186 aa6.55□□□□□ -1.36
PTCH1-220ENST00000550136 Q9H8V8 135 aa6.55□□□□□ -1.36
PTCH1-220ENST00000550136 LENEPQ9Y5L5 61 aa6.55□□□□□ -1.36
PTCH1-220ENST00000550136 PRR9Q5T870 116 aa6.55□□□□□ -1.36
PTCH1-220ENST00000550136 CUBNO60494 3623 aa6.55□□□□□ -1.36
PTCH1-220ENST00000550136 CR1P17927 2039 aa6.55□□□□□ -1.36
PTCH1-220ENST00000550136 LINC00337Q8N6G1 96 aa6.54□□□□□ -1.36
PTCH1-220ENST00000550136 MAPK1IP1LQ8NDC0 245 aa6.54□□□□□ -1.36
PTCH1-220ENST00000550136 ABCA1O95477 2261 aa6.54□□□□□ -1.36
PTCH1-220ENST00000550136 TGP01266 2768 aa6.54□□□□□ -1.36
PTCH1-220ENST00000550136 CHKB-CPT1BH3BT56 60 aa6.54□□□□□ -1.36
PTCH1-220ENST00000550136 SLPIP03973 132 aa6.54□□□□□ -1.36
PTCH1-220ENST00000550136 Q6ZTI0 123 aa6.54□□□□□ -1.36
PTCH1-220ENST00000550136 GNRH2O43555 120 aa6.53□□□□□ -1.36
PTCH1-220ENST00000550136 RNASE3P12724 160 aaKnown RBP6.53□□□□□ -1.36
PTCH1-220ENST00000550136 RPL36AP83881 106 aaKnown RBP6.53□□□□□ -1.36
PTCH1-220ENST00000550136 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.53□□□□□ -1.36
PTCH1-220ENST00000550136 RPL36ALQ969Q0 106 aaKnown RBP6.53□□□□□ -1.36
PTCH1-220ENST00000550136 OCR1Q9BZK8 76 aa6.53□□□□□ -1.36
PTCH1-220ENST00000550136 IGLV5-45A0A087WSX0 123 aa6.53□□□□□ -1.36
PTCH1-220ENST00000550136 TRBV10-1A0A0K0K1A3 114 aa6.53□□□□□ -1.36
PTCH1-220ENST00000550136 F5H697 171 aa6.53□□□□□ -1.36
PTCH1-220ENST00000550136 TRBV6-8A0A0A6YYG3 113 aa6.52□□□□□ -1.37
PTCH1-220ENST00000550136 CYP4F30PQ9H0H9 118 aa6.52□□□□□ -1.37
PTCH1-220ENST00000550136 LOC110117498A0A087WWA1 95 aa6.52□□□□□ -1.37
PTCH1-220ENST00000550136 IGHV3-38A0A0C4DH36 116 aa6.52□□□□□ -1.37
PTCH1-220ENST00000550136 IGLV5-39A0A0G2JS06 123 aa6.52□□□□□ -1.37
PTCH1-220ENST00000550136 Q6ZQT0 140 aa6.52□□□□□ -1.37
PTCH1-220ENST00000550136 HIGD2AQ9BW72 106 aa6.52□□□□□ -1.37
PTCH1-220ENST00000550136 MGAM2Q2M2H8 2515 aa6.51□□□□□ -1.37
PTCH1-220ENST00000550136 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.51□□□□□ -1.37
PTCH1-220ENST00000550136 IGKV2-28A0A075B6P5 120 aa6.51□□□□□ -1.37
PTCH1-220ENST00000550136 IGKV2D-28P01615 120 aa6.51□□□□□ -1.37
PTCH1-220ENST00000550136 PKD1L1Q8TDX9 2849 aa6.51□□□□□ -1.37
PTCH1-220ENST00000550136 CLPSL1A2RUU4 121 aa6.51□□□□□ -1.37
PTCH1-220ENST00000550136 LINC01554Q52M75 96 aa6.51□□□□□ -1.37
PTCH1-220ENST00000550136 KRTAP4-8Q9BYQ9 185 aa6.51□□□□□ -1.37
PTCH1-220ENST00000550136 K7EQG2 157 aa6.5□□□□□ -1.37
PTCH1-220ENST00000550136 M0QY20 66 aa6.5□□□□□ -1.37
PTCH1-220ENST00000550136 LINC00313P59037 77 aa6.5□□□□□ -1.37
PTCH1-220ENST00000550136 CDKN2A-AS1Q9UH64 79 aa6.5□□□□□ -1.37
PTCH1-220ENST00000550136 F8W735 103 aaPredicted RBP6.5□□□□□ -1.37
PTCH1-220ENST00000550136 RNASE13Q5GAN3 156 aaKnown RBP6.5□□□□□ -1.37
PTCH1-220ENST00000550136 ZFAND2AQ8N6M9 145 aa6.5□□□□□ -1.37
PTCH1-220ENST00000550136 GAFA1Q96PS6 74 aa6.5□□□□□ -1.37
PTCH1-220ENST00000550136 LIMD2Q9BT23 127 aa6.5□□□□□ -1.37
PTCH1-220ENST00000550136 LOC100131303A0A0U1RQF7 123 aa6.49□□□□□ -1.37
PTCH1-220ENST00000550136 C9orf106Q8NAJ2 232 aa6.49□□□□□ -1.37
PTCH1-220ENST00000550136 SND1-IT1Q9HBX3 110 aa6.48□□□□□ -1.37
PTCH1-220ENST00000550136 S4R3C0 116 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms