RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 FLGP20930 4061 aaPredicted RBP3.62□□□□□ -1.83
LIMA1-204ENST00000549064 TRAV13-1A0A0B4J241 112 aa3.62□□□□□ -1.83
LIMA1-204ENST00000549064 C1orf196B1AJZ1 125 aa3.62□□□□□ -1.83
LIMA1-204ENST00000549064 HSBP1L1C9JCN9 74 aa3.62□□□□□ -1.83
LIMA1-204ENST00000549064 NDUFA1O15239 70 aa3.62□□□□□ -1.83
LIMA1-204ENST00000549064 NUPR1O60356 82 aa3.62□□□□□ -1.83
LIMA1-204ENST00000549064 CTRLP40313 264 aa3.62□□□□□ -1.83
LIMA1-204ENST00000549064 RPL28P46779 137 aaKnown RBP3.62□□□□□ -1.83
LIMA1-204ENST00000549064 LYZL1Q6UWQ5 148 aa3.62□□□□□ -1.83
LIMA1-204ENST00000549064 ORAOV1Q8WV07 137 aa3.62□□□□□ -1.83
LIMA1-204ENST00000549064 TMEM242Q9NWH2 141 aa3.62□□□□□ -1.83
LIMA1-204ENST00000549064 MAP1LC3B2A6NCE7 125 aa3.61□□□□□ -1.83
LIMA1-204ENST00000549064 I3L3M4 83 aa3.61□□□□□ -1.83
LIMA1-204ENST00000549064 FOXA3P55318 350 aaPredicted RBP3.61□□□□□ -1.83
LIMA1-204ENST00000549064 MRPL52Q86TS9 123 aaKnown RBP3.61□□□□□ -1.83
LIMA1-204ENST00000549064 OR10D4PQ8NGN7 298 aa3.61□□□□□ -1.83
LIMA1-204ENST00000549064 MRAP2Q96G30 205 aa3.61□□□□□ -1.83
LIMA1-204ENST00000549064 MAP1LC3BQ9GZQ8 125 aa3.61□□□□□ -1.83
LIMA1-204ENST00000549064 RNASE7Q9H1E1 156 aaKnown RBP3.61□□□□□ -1.83
LIMA1-204ENST00000549064 IGKV2D-26A0A0A0MRZ7 120 aa3.6□□□□□ -1.83
LIMA1-204ENST00000549064 M0R2T5 61 aa3.6□□□□□ -1.83
LIMA1-204ENST00000549064 BCE1O60756 84 aa3.6□□□□□ -1.83
LIMA1-204ENST00000549064 RAB5AP20339 215 aa3.6□□□□□ -1.83
LIMA1-204ENST00000549064 TMEM241Q24JQ0 296 aa3.6□□□□□ -1.83
LIMA1-204ENST00000549064 FP248Q71RG6 208 aaPredicted RBP3.6□□□□□ -1.83
LIMA1-204ENST00000549064 TCEAL7Q9BRU2 100 aa3.6□□□□□ -1.83
LIMA1-204ENST00000549064 CCDC32Q9BV29 185 aa3.6□□□□□ -1.83
LIMA1-204ENST00000549064 KRTAP2-2Q9BYT5 123 aa3.6□□□□□ -1.83
LIMA1-204ENST00000549064 C22orf24Q9Y442 160 aa3.6□□□□□ -1.83
LIMA1-204ENST00000549064 V9GYY9 64 aa3.6□□□□□ -1.83
LIMA1-204ENST00000549064 SSPOA2VEC9 5147 aa3.59□□□□□ -1.83
LIMA1-204ENST00000549064 C7orf77A4D0Y5 90 aa3.59□□□□□ -1.83
LIMA1-204ENST00000549064 A6NDN8 102 aa3.59□□□□□ -1.83
LIMA1-204ENST00000549064 F2Z2F3 143 aa3.59□□□□□ -1.83
LIMA1-204ENST00000549064 FAM229BQ4G0N7 80 aa3.59□□□□□ -1.83
LIMA1-204ENST00000549064 RPL7L1Q6DKI1 246 aaKnown RBP3.59□□□□□ -1.83
LIMA1-204ENST00000549064 C2orf82Q6UX34 121 aa3.59□□□□□ -1.83
LIMA1-204ENST00000549064 Q6ZUT4 128 aa3.59□□□□□ -1.83
LIMA1-204ENST00000549064 C3orf22Q8N5N4 141 aa3.59□□□□□ -1.83
LIMA1-204ENST00000549064 LINC00469Q8N7U9 141 aa3.59□□□□□ -1.83
LIMA1-204ENST00000549064 A0A1B0GV50 99 aa3.58□□□□□ -1.84
LIMA1-204ENST00000549064 SSNA1O43805 119 aa3.58□□□□□ -1.84
LIMA1-204ENST00000549064 RPS20P60866 119 aaKnown RBP3.58□□□□□ -1.84
LIMA1-204ENST00000549064 VAMP3Q15836 100 aa3.58□□□□□ -1.84
LIMA1-204ENST00000549064 UBE2D4Q9Y2X8 147 aa3.58□□□□□ -1.84
LIMA1-204ENST00000549064 MACF1Q9UPN3 7388 aaKnown RBP3.57□□□□□ -1.84
LIMA1-204ENST00000549064 IGHV3OR16-9A0A0B4J2B5 98 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 A0A1B0GW15 77 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 NDUFC2-KCTD14E9PQ53 114 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 K7EN84 100 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 USH2AO75445 5202 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 IFNA1P01562 189 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 RPL35P42766 123 aaKnown RBP3.57□□□□□ -1.84
LIMA1-204ENST00000549064 CXCL5P42830 114 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 NMUP48645 174 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 CTAG1AP78358 180 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 AKR1C8PQ5T2L2 129 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 KRTAP13-1Q8IUC0 172 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 ENKURQ8TC29 256 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 XAGE1AQ9HD64 81 aa3.57□□□□□ -1.84
LIMA1-204ENST00000549064 TRBV6-5A0A0K0K1A5 114 aa3.56□□□□□ -1.84
LIMA1-204ENST00000549064 PFN2P35080 140 aa3.56□□□□□ -1.84
LIMA1-204ENST00000549064 UBE2AP49459 152 aa3.56□□□□□ -1.84
LIMA1-204ENST00000549064 CENPWQ5EE01 88 aa3.56□□□□□ -1.84
LIMA1-204ENST00000549064 CAMK2N1Q7Z7J9 78 aa3.56□□□□□ -1.84
LIMA1-204ENST00000549064 C9orf62Q8N4C0 152 aa3.56□□□□□ -1.84
LIMA1-204ENST00000549064 PACRGQ96M98 296 aaPredicted RBP3.56□□□□□ -1.84
LIMA1-204ENST00000549064 MARVELD1Q9BSK0 173 aa3.56□□□□□ -1.84
LIMA1-204ENST00000549064 ST20Q9HBF5 79 aa3.56□□□□□ -1.84
LIMA1-204ENST00000549064 CYTL1Q9NRR1 136 aa3.56□□□□□ -1.84
LIMA1-204ENST00000549064 FCGBPQ9Y6R7 5405 aaPredicted RBP3.56□□□□□ -1.84
LIMA1-204ENST00000549064 TRBV30A0A0K0K1B3 111 aa3.55□□□□□ -1.84
LIMA1-204ENST00000549064 PFDN1O60925 122 aa3.55□□□□□ -1.84
LIMA1-204ENST00000549064 UPK1BO75841 260 aa3.55□□□□□ -1.84
LIMA1-204ENST00000549064 POLR2KP53803 58 aaKnown RBP3.55□□□□□ -1.84
LIMA1-204ENST00000549064 Q5BKY6 102 aa3.55□□□□□ -1.84
LIMA1-204ENST00000549064 LCE1FQ5T754 118 aa3.55□□□□□ -1.84
LIMA1-204ENST00000549064 FAM104AQ969W3 186 aa3.55□□□□□ -1.84
LIMA1-204ENST00000549064 LINC00167Q96N53 147 aa3.55□□□□□ -1.84
LIMA1-204ENST00000549064 CNFNQ9BYD5 112 aa3.55□□□□□ -1.84
LIMA1-204ENST00000549064 SYNE2Q8WXH0 6885 aaKnown RBP3.55□□□□□ -1.84
LIMA1-204ENST00000549064 BORCS7-ASMTA0A0B4J1R7 106 aa3.54□□□□□ -1.84
LIMA1-204ENST00000549064 ZNF727A8MUV8 499 aa3.54□□□□□ -1.84
LIMA1-204ENST00000549064 PRLHP81277 87 aa3.54□□□□□ -1.84
LIMA1-204ENST00000549064 TAL2Q16559 108 aa3.54□□□□□ -1.84
LIMA1-204ENST00000549064 PCOTHQ58A44 107 aa3.54□□□□□ -1.84
LIMA1-204ENST00000549064 KRTAP5-3Q6L8H2 238 aa3.54□□□□□ -1.84
LIMA1-204ENST00000549064 SPAG11AQ6PDA7 123 aa3.54□□□□□ -1.84
LIMA1-204ENST00000549064 TEX261Q6UWH6 196 aa3.54□□□□□ -1.84
LIMA1-204ENST00000549064 SMIM26A0A096LP01 95 aa3.53□□□□□ -1.84
LIMA1-204ENST00000549064 TRBV27A0A0K0K1C4 114 aa3.53□□□□□ -1.84
LIMA1-204ENST00000549064 A0A1B0GVG6 124 aa3.53□□□□□ -1.84
LIMA1-204ENST00000549064 FCER1GP30273 86 aa3.53□□□□□ -1.84
LIMA1-204ENST00000549064 HERVK_113P61574 105 aa3.53□□□□□ -1.84
LIMA1-204ENST00000549064 SMIM15Q7Z3B0 74 aa3.53□□□□□ -1.84
LIMA1-204ENST00000549064 KCNRGQ8N5I3 272 aa3.53□□□□□ -1.84
LIMA1-204ENST00000549064 DAND5Q8N907 189 aa3.53□□□□□ -1.84
LIMA1-204ENST00000549064 SFT2D1Q8WV19 159 aa3.53□□□□□ -1.84
LIMA1-204ENST00000549064 TP73-AS1Q9UF72 201 aa3.53□□□□□ -1.84
LIMA1-204ENST00000549064 TRBV20OR9-2A0A075B6H5 130 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms