RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 SMCO4Q9NRQ5 59 aa7.48□□□□□ -1.21
YBX3-217ENST00000546164 URB1-AS1Q96HZ7 61 aa7.47□□□□□ -1.21
YBX3-217ENST00000546164 LINC00614P0C842 121 aa7.46□□□□□ -1.22
YBX3-217ENST00000546164 TLX1NBP0CAT3 122 aa7.46□□□□□ -1.22
YBX3-217ENST00000546164 C10orf25Q5T742 122 aa7.46□□□□□ -1.22
YBX3-217ENST00000546164 A0A096LNJ9 63 aa7.45□□□□□ -1.22
YBX3-217ENST00000546164 GAGE2BQ13066 116 aa7.45□□□□□ -1.22
YBX3-217ENST00000546164 UNQ6190/PRO20217Q6UXQ8 127 aa7.45□□□□□ -1.22
YBX3-217ENST00000546164 C7orf33Q8WU49 177 aa7.45□□□□□ -1.22
YBX3-217ENST00000546164 CST9LQ9H4G1 147 aa7.45□□□□□ -1.22
YBX3-217ENST00000546164 GEMIN7Q9H840 131 aaKnown RBP7.45□□□□□ -1.22
YBX3-217ENST00000546164 C6orf48Q9UBA6 75 aa7.45□□□□□ -1.22
YBX3-217ENST00000546164 IGLV5-45A0A087WSX0 123 aa7.44□□□□□ -1.22
YBX3-217ENST00000546164 A0A0J9YXV3 536 aa7.44□□□□□ -1.22
YBX3-217ENST00000546164 TRBV30A0A0K0K1B3 111 aa7.44□□□□□ -1.22
YBX3-217ENST00000546164 TINCRA0A1B0GVN0 87 aa7.44□□□□□ -1.22
YBX3-217ENST00000546164 KRTAP29-1A8MX34 341 aaPredicted RBP7.44□□□□□ -1.22
YBX3-217ENST00000546164 RAB5BP61020 215 aa7.44□□□□□ -1.22
YBX3-217ENST00000546164 PMVKQ15126 192 aa7.44□□□□□ -1.22
YBX3-217ENST00000546164 CDKN2A-AS1Q9UH64 79 aa7.44□□□□□ -1.22
YBX3-217ENST00000546164 HBDP02042 147 aa7.43□□□□□ -1.22
YBX3-217ENST00000546164 HNRNPA3P51991 378 aaKnown RBP7.43□□□□□ -1.22
YBX3-217ENST00000546164 RPL18AQ02543 176 aaKnown RBP7.43□□□□□ -1.22
YBX3-217ENST00000546164 CBLN2Q8IUK8 224 aa7.43□□□□□ -1.22
YBX3-217ENST00000546164 Q8IZM0 81 aa7.43□□□□□ -1.22
YBX3-217ENST00000546164 SLC7A5P1Q8MH63 180 aa7.43□□□□□ -1.22
YBX3-217ENST00000546164 A0A1W2PNN7 141 aa7.42□□□□□ -1.22
YBX3-217ENST00000546164 PRSS2P07478 247 aa7.42□□□□□ -1.22
YBX3-217ENST00000546164 PDZD11Q5EBL8 140 aa7.42□□□□□ -1.22
YBX3-217ENST00000546164 C2orf82Q6UX34 121 aa7.42□□□□□ -1.22
YBX3-217ENST00000546164 Q6ZRP5 223 aa7.42□□□□□ -1.22
YBX3-217ENST00000546164 LINC00469Q8N7U9 141 aa7.42□□□□□ -1.22
YBX3-217ENST00000546164 PACRGQ96M98 296 aaPredicted RBP7.42□□□□□ -1.22
YBX3-217ENST00000546164 SMIM1B2RUZ4 78 aa7.41□□□□□ -1.22
YBX3-217ENST00000546164 C9orf116Q5BN46 136 aaPredicted RBP7.41□□□□□ -1.22
YBX3-217ENST00000546164 TOMM7Q9P0U1 55 aa7.41□□□□□ -1.22
YBX3-217ENST00000546164 NDUFC2-KCTD14E9PQ53 114 aa7.4□□□□□ -1.22
YBX3-217ENST00000546164 ATP5LO75964 103 aa7.4□□□□□ -1.22
YBX3-217ENST00000546164 OXTP01178 125 aa7.4□□□□□ -1.22
YBX3-217ENST00000546164 CKS1BP61024 79 aa7.4□□□□□ -1.22
YBX3-217ENST00000546164 PRR3P79522 188 aaKnown RBP7.4□□□□□ -1.22
YBX3-217ENST00000546164 C6orf226Q5I0X4 101 aa7.4□□□□□ -1.22
YBX3-217ENST00000546164 CHCHD1Q96BP2 118 aaKnown RBP7.4□□□□□ -1.22
YBX3-217ENST00000546164 IGLC3P0DOY3 106 aa7.39□□□□□ -1.23
YBX3-217ENST00000546164 CXCL5P42830 114 aa7.39□□□□□ -1.23
YBX3-217ENST00000546164 PMCHL1Q16048 86 aa7.39□□□□□ -1.23
YBX3-217ENST00000546164 F8VRH5 84 aa7.38□□□□□ -1.23
YBX3-217ENST00000546164 H3BRM9 83 aa7.37□□□□□ -1.23
YBX3-217ENST00000546164 GAGE2EQ4V326 116 aa7.37□□□□□ -1.23
YBX3-217ENST00000546164 KRTAP4-9Q9BYQ8 210 aa7.37□□□□□ -1.23
YBX3-217ENST00000546164 GAGE2DQ9UEU5 116 aa7.37□□□□□ -1.23
YBX3-217ENST00000546164 TRGC2P03986 189 aa7.36□□□□□ -1.23
YBX3-217ENST00000546164 SPINK8P0C7L1 97 aa7.36□□□□□ -1.23
YBX3-217ENST00000546164 COX7B2Q8TF08 81 aa7.36□□□□□ -1.23
YBX3-217ENST00000546164 TNXBP22105 4242 aa7.36□□□□□ -1.23
YBX3-217ENST00000546164 IGLV5-39A0A0G2JS06 123 aa7.35□□□□□ -1.23
YBX3-217ENST00000546164 FAM168BA1KXE4 195 aa7.35□□□□□ -1.23
YBX3-217ENST00000546164 COLCA2A8K830 154 aa7.35□□□□□ -1.23
YBX3-217ENST00000546164 ZNF22P17026 224 aaPredicted RBP7.35□□□□□ -1.23
YBX3-217ENST00000546164 NDUFA6P56556 154 aa7.35□□□□□ -1.23
YBX3-217ENST00000546164 ODF1Q14990 250 aa7.35□□□□□ -1.23
YBX3-217ENST00000546164 C9orf129Q5T035 196 aaKnown RBP7.35□□□□□ -1.23
YBX3-217ENST00000546164 PHF5AQ7RTV0 110 aaKnown RBP7.35□□□□□ -1.23
YBX3-217ENST00000546164 BAGE3Q86Y29 109 aa7.35□□□□□ -1.23
YBX3-217ENST00000546164 KRTAP7-1Q8IUC3 87 aa7.35□□□□□ -1.23
YBX3-217ENST00000546164 HMCN2Q8NDA2 5059 aa7.34□□□□□ -1.23
YBX3-217ENST00000546164 TRAV12-1A0A0B4J245 112 aa7.34□□□□□ -1.23
YBX3-217ENST00000546164 C11orf86A6NJI1 115 aa7.33□□□□□ -1.24
YBX3-217ENST00000546164 HSBP1O75506 76 aa7.33□□□□□ -1.24
YBX3-217ENST00000546164 GHRHP01286 108 aa7.33□□□□□ -1.24
YBX3-217ENST00000546164 SRSF9Q13242 221 aaKnown RBP eCLIP7.33□□□□□ -1.24
YBX3-217ENST00000546164 PSORS1C2Q9UIG4 136 aa7.33□□□□□ -1.24
YBX3-217ENST00000546164 SPINK6Q6UWN8 80 aa7.32□□□□□ -1.24
YBX3-217ENST00000546164 FAM19A5Q7Z5A7 132 aaPredicted RBP7.32□□□□□ -1.24
YBX3-217ENST00000546164 IFI27L1Q96BM0 104 aa7.32□□□□□ -1.24
YBX3-217ENST00000546164 CHTOPQ9Y3Y2 248 aaKnown RBP7.32□□□□□ -1.24
YBX3-217ENST00000546164 M0QXV9 152 aa7.31□□□□□ -1.24
YBX3-217ENST00000546164 LINC00310P59036 64 aa7.31□□□□□ -1.24
YBX3-217ENST00000546164 SERF1AO75920 110 aa7.3□□□□□ -1.24
YBX3-217ENST00000546164 FAM19A2Q8N3H0 131 aa7.3□□□□□ -1.24
YBX3-217ENST00000546164 XAGE1AQ9HD64 81 aa7.3□□□□□ -1.24
YBX3-217ENST00000546164 MT1HL1P0DM35 61 aa7.29□□□□□ -1.24
YBX3-217ENST00000546164 C1orf137Q5JT78 98 aa7.29□□□□□ -1.24
YBX3-217ENST00000546164 TMEM170BQ5T4T1 132 aa7.29□□□□□ -1.24
YBX3-217ENST00000546164 SERTAD4-AS1Q5TG53 156 aa7.29□□□□□ -1.24
YBX3-217ENST00000546164 SFTA2Q6UW10 78 aa7.29□□□□□ -1.24
YBX3-217ENST00000546164 KRTAP11-1Q8IUC1 163 aa7.29□□□□□ -1.24
YBX3-217ENST00000546164 KRTAP4-2Q9BYR5 136 aa7.29□□□□□ -1.24
YBX3-217ENST00000546164 TP73-AS1Q9UF72 201 aa7.28□□□□□ -1.24
YBX3-217ENST00000546164 PLA2G2DQ9UNK4 145 aa7.28□□□□□ -1.24
YBX3-217ENST00000546164 TMEM223A0PJW6 202 aa7.27□□□□□ -1.25
YBX3-217ENST00000546164 LEPROTL1O95214 131 aa7.27□□□□□ -1.25
YBX3-217ENST00000546164 REG3GQ6UW15 175 aa7.27□□□□□ -1.25
YBX3-217ENST00000546164 LINC01600Q96MT4 127 aa7.27□□□□□ -1.25
YBX3-217ENST00000546164 C22orf24Q9Y442 160 aa7.27□□□□□ -1.25
YBX3-217ENST00000546164 NUPR1O60356 82 aa7.26□□□□□ -1.25
YBX3-217ENST00000546164 SCO1O75880 301 aa7.26□□□□□ -1.25
YBX3-217ENST00000546164 IGLV7-43P04211 117 aa7.26□□□□□ -1.25
YBX3-217ENST00000546164 UBE2BP63146 152 aa7.26□□□□□ -1.25
YBX3-217ENST00000546164 COX17Q14061 63 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms