RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 KRTAP10-3P60369 221 aa10.49□□□□□ -0.73
USP28-214ENST00000545540 C9orf116Q5BN46 136 aaPredicted RBP10.49□□□□□ -0.73
USP28-214ENST00000545540 TRBV6-4A0A1B0GX49 114 aa10.49□□□□□ -0.73
USP28-214ENST00000545540 PF4P02776 101 aa10.48□□□□□ -0.73
USP28-214ENST00000545540 HTN3P15516 51 aa10.47□□□□□ -0.73
USP28-214ENST00000545540 TMEM86BQ8N661 226 aa10.47□□□□□ -0.73
USP28-214ENST00000545540 C14orf132Q9NPU4 83 aa10.47□□□□□ -0.73
USP28-214ENST00000545540 LINC00959A0A1B0GUT2 108 aa10.47□□□□□ -0.73
USP28-214ENST00000545540 HERV-K104P63124 156 aa10.47□□□□□ -0.73
USP28-214ENST00000545540 LECT2O14960 151 aa10.46□□□□□ -0.73
USP28-214ENST00000545540 RNASE1P07998 156 aaKnown RBP10.46□□□□□ -0.73
USP28-214ENST00000545540 DEFB135Q30KP9 77 aa10.46□□□□□ -0.73
USP28-214ENST00000545540 NSD1Q96L73 2696 aaPredicted RBP10.45□□□□□ -0.74
USP28-214ENST00000545540 FAM236AA0A1B0GUQ0 79 aa10.45□□□□□ -0.74
USP28-214ENST00000545540 FAM236BA0A1B0GV22 79 aa10.45□□□□□ -0.74
USP28-214ENST00000545540 NCR3O14931 201 aa10.45□□□□□ -0.74
USP28-214ENST00000545540 DNAL4O96015 105 aa10.44□□□□□ -0.74
USP28-214ENST00000545540 LINC00269Q8N2A0 174 aa10.44□□□□□ -0.74
USP28-214ENST00000545540 FAM222AQ5U5X8 452 aa10.44□□□□□ -0.74
USP28-214ENST00000545540 FAM19A3Q7Z5A8 133 aa10.43□□□□□ -0.74
USP28-214ENST00000545540 OVOL2Q9BRP0 275 aa10.43□□□□□ -0.74
USP28-214ENST00000545540 FLNBO75369 2602 aaKnown RBP10.43□□□□□ -0.74
USP28-214ENST00000545540 TRAV13-2A0A0B4J235 113 aa10.43□□□□□ -0.74
USP28-214ENST00000545540 MALP21145 153 aa10.43□□□□□ -0.74
USP28-214ENST00000545540 A0A087WZ39 114 aa10.42□□□□□ -0.74
USP28-214ENST00000545540 COPS9Q8WXC6 57 aa10.41□□□□□ -0.74
USP28-214ENST00000545540 IGKV3D-7A0A0C4DH55 119 aa10.4□□□□□ -0.74
USP28-214ENST00000545540 ANGP03950 147 aaKnown RBP10.4□□□□□ -0.74
USP28-214ENST00000545540 LINC01600Q96MT4 127 aa10.4□□□□□ -0.74
USP28-214ENST00000545540 TRACP01848 142 aa10.4□□□□□ -0.74
USP28-214ENST00000545540 RPL28P46779 137 aaKnown RBP10.4□□□□□ -0.74
USP28-214ENST00000545540 DEFB121Q5J5C9 76 aa10.4□□□□□ -0.74
USP28-214ENST00000545540 SDIM1Q6ZPB5 146 aa10.4□□□□□ -0.74
USP28-214ENST00000545540 NOTCH1P46531 2555 aa10.39□□□□□ -0.75
USP28-214ENST00000545540 X6R8D5 127 aa10.39□□□□□ -0.75
USP28-214ENST00000545540 FBN1P35555 2871 aaKnown RBP10.39□□□□□ -0.75
USP28-214ENST00000545540 C6orf223Q8N319 242 aa10.38□□□□□ -0.75
USP28-214ENST00000545540 STAB1Q9NY15 2570 aa10.37□□□□□ -0.75
USP28-214ENST00000545540 SS18Q15532 418 aa10.37□□□□□ -0.75
USP28-214ENST00000545540 MAST4O15021 2626 aa10.36□□□□□ -0.75
USP28-214ENST00000545540 FAM240AA0A1B0GVK7 77 aa10.36□□□□□ -0.75
USP28-214ENST00000545540 IBA57-AS1B1ANH7 110 aa10.36□□□□□ -0.75
USP28-214ENST00000545540 Q8NDZ9 215 aa10.36□□□□□ -0.75
USP28-214ENST00000545540 CELA1Q9UNI1 258 aa10.36□□□□□ -0.75
USP28-214ENST00000545540 A0A087WVE0 104 aa10.36□□□□□ -0.75
USP28-214ENST00000545540 HILS1P60008 231 aa10.36□□□□□ -0.75
USP28-214ENST00000545540 C16orf95Q9H693 158 aa10.35□□□□□ -0.75
USP28-214ENST00000545540 Q6Q795 121 aa10.35□□□□□ -0.75
USP28-214ENST00000545540 PRO0255Q9UI72 69 aa10.35□□□□□ -0.75
USP28-214ENST00000545540 TENM3Q9P273 2699 aa10.34□□□□□ -0.75
USP28-214ENST00000545540 CHCHD10Q8WYQ3 142 aaPredicted RBP10.34□□□□□ -0.75
USP28-214ENST00000545540 CMC4P56277 68 aaPredicted RBP10.34□□□□□ -0.75
USP28-214ENST00000545540 C10orf25Q5T742 122 aa10.34□□□□□ -0.75
USP28-214ENST00000545540 SMIM20Q8N5G0 67 aa10.34□□□□□ -0.75
USP28-214ENST00000545540 LINC00846Q9NV44 126 aa10.33□□□□□ -0.76
USP28-214ENST00000545540 WFDC9Q8NEX5 89 aa10.33□□□□□ -0.76
USP28-214ENST00000545540 INAFM1C9JVW0 142 aa10.32□□□□□ -0.76
USP28-214ENST00000545540 CXCL5P42830 114 aa10.32□□□□□ -0.76
USP28-214ENST00000545540 KLK5Q9Y337 293 aaPredicted RBP10.32□□□□□ -0.76
USP28-214ENST00000545540 IGHV4-28A0A0C4DH34 117 aa10.31□□□□□ -0.76
USP28-214ENST00000545540 TRBV7-7A0A0K0K1E9 115 aa10.31□□□□□ -0.76
USP28-214ENST00000545540 REG3AQ06141 175 aa10.31□□□□□ -0.76
USP28-214ENST00000545540 UNQ6190/PRO20217Q6UXQ8 127 aa10.31□□□□□ -0.76
USP28-214ENST00000545540 LINC00643Q86TS7 51 aa10.31□□□□□ -0.76
USP28-214ENST00000545540 LY6G6DO95868 133 aa10.3□□□□□ -0.76
USP28-214ENST00000545540 CFAP161Q6P656 301 aa10.3□□□□□ -0.76
USP28-214ENST00000545540 DAD1P61803 113 aa10.3□□□□□ -0.76
USP28-214ENST00000545540 NANOS2P60321 138 aaKnown RBP10.3□□□□□ -0.76
USP28-214ENST00000545540 KIR2DL5BQ8NHK3 375 aa10.3□□□□□ -0.76
USP28-214ENST00000545540 KLK12Q9UKR0 248 aa10.3□□□□□ -0.76
USP28-214ENST00000545540 INAFM2P0DMQ5 153 aa10.29□□□□□ -0.76
USP28-214ENST00000545540 F8P00451 2351 aa10.29□□□□□ -0.76
USP28-214ENST00000545540 ACYP1P07311 99 aa10.28□□□□□ -0.76
USP28-214ENST00000545540 C6orf99Q4VX62 202 aa10.28□□□□□ -0.76
USP28-214ENST00000545540 KIAA0087Q14695 138 aa10.28□□□□□ -0.76
USP28-214ENST00000545540 XAGE1AQ9HD64 81 aa10.28□□□□□ -0.76
USP28-214ENST00000545540 FAM110AQ9BQ89 295 aa10.27□□□□□ -0.76
USP28-214ENST00000545540 MRPL23Q16540 153 aaKnown RBP10.27□□□□□ -0.77
USP28-214ENST00000545540 H0YGX0 51 aa10.27□□□□□ -0.77
USP28-214ENST00000545540 Q8IZM0 81 aa10.27□□□□□ -0.77
USP28-214ENST00000545540 HIST1H4AP62805 103 aaKnown RBP10.26□□□□□ -0.77
USP28-214ENST00000545540 BAHCC1Q9P281 2608 aa10.26□□□□□ -0.77
USP28-214ENST00000545540 A0A1B0GUV1 79 aa10.25□□□□□ -0.77
USP28-214ENST00000545540 NBEAL1Q6ZS30 2694 aa10.25□□□□□ -0.77
USP28-214ENST00000545540 ORMDL1Q9P0S3 153 aa10.25□□□□□ -0.77
USP28-214ENST00000545540 RPL18AQ02543 176 aaKnown RBP10.25□□□□□ -0.77
USP28-214ENST00000545540 S100A7L2Q5SY68 101 aa10.25□□□□□ -0.77
USP28-214ENST00000545540 C9orf153Q5TBE3 101 aa10.24□□□□□ -0.77
USP28-214ENST00000545540 CD164L2Q6UWJ8 174 aa10.24□□□□□ -0.77
USP28-214ENST00000545540 LINC00612Q8N6U2 182 aa10.23□□□□□ -0.77
USP28-214ENST00000545540 RETNQ9HD89 108 aa10.23□□□□□ -0.77
USP28-214ENST00000545540 J3QKU1 62 aa10.23□□□□□ -0.77
USP28-214ENST00000545540 CYSTM1Q9H1C7 97 aa10.23□□□□□ -0.77
USP28-214ENST00000545540 ANK2Q01484 3957 aa10.22□□□□□ -0.77
USP28-214ENST00000545540 CYSRT1A8MQ03 144 aa10.22□□□□□ -0.77
USP28-214ENST00000545540 SPAG11BQ08648 103 aa10.22□□□□□ -0.77
USP28-214ENST00000545540 HIGD2BQ4VC39 106 aa10.22□□□□□ -0.77
USP28-214ENST00000545540 Q8N814 137 aa10.22□□□□□ -0.77
USP28-214ENST00000545540 COL6A5A8TX70 2615 aa10.22□□□□□ -0.77
USP28-214ENST00000545540 M0R2N4 97 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms