RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 IGIPA6NJ69 53 aa7.98□□□□□ -1.13
RTN3-213ENST00000543552 FAM19A3Q7Z5A8 133 aa7.98□□□□□ -1.13
RTN3-213ENST00000543552 TIMM17AQ99595 171 aa7.98□□□□□ -1.13
RTN3-213ENST00000543552 ALKBH7Q9BT30 221 aaPredicted RBP7.98□□□□□ -1.13
RTN3-213ENST00000543552 GEMIN7Q9H840 131 aaKnown RBP7.98□□□□□ -1.13
RTN3-213ENST00000543552 IGLV1-50A0A075B6I6 118 aa7.97□□□□□ -1.13
RTN3-213ENST00000543552 LINC01549A6NIU2 74 aa7.97□□□□□ -1.13
RTN3-213ENST00000543552 TRAV9-1A0A075B6T8 112 aa7.96□□□□□ -1.14
RTN3-213ENST00000543552 F8VRH5 84 aa7.96□□□□□ -1.14
RTN3-213ENST00000543552 CXCL5P42830 114 aa7.96□□□□□ -1.14
RTN3-213ENST00000543552 LBHQ53QV2 105 aaPredicted RBP7.96□□□□□ -1.14
RTN3-213ENST00000543552 C9orf129Q5T035 196 aaKnown RBP7.96□□□□□ -1.14
RTN3-213ENST00000543552 ZC2HC1BQ5TFG8 222 aa7.96□□□□□ -1.14
RTN3-213ENST00000543552 LINC00518Q8N0U6 118 aa7.96□□□□□ -1.14
RTN3-213ENST00000543552 RPL13AP40429 203 aaKnown RBP7.95□□□□□ -1.14
RTN3-213ENST00000543552 CLLU1Q5K131 121 aa7.95□□□□□ -1.14
RTN3-213ENST00000543552 KRTAP11-1Q8IUC1 163 aa7.95□□□□□ -1.14
RTN3-213ENST00000543552 PRR26Q8N8Z3 221 aa7.95□□□□□ -1.14
RTN3-213ENST00000543552 TOMM6Q96B49 74 aa7.95□□□□□ -1.14
RTN3-213ENST00000543552 NUPR1O60356 82 aa7.94□□□□□ -1.14
RTN3-213ENST00000543552 UQCC3Q6UW78 93 aa7.94□□□□□ -1.14
RTN3-213ENST00000543552 ERASQ7Z444 233 aa7.94□□□□□ -1.14
RTN3-213ENST00000543552 KRTAP7-1Q8IUC3 87 aa7.94□□□□□ -1.14
RTN3-213ENST00000543552 SCGB3A1Q96QR1 104 aa7.94□□□□□ -1.14
RTN3-213ENST00000543552 CDKN2A-AS1Q9UH64 79 aa7.94□□□□□ -1.14
RTN3-213ENST00000543552 S100PP25815 95 aa7.93□□□□□ -1.14
RTN3-213ENST00000543552 TP73-AS1Q9UF72 201 aa7.92□□□□□ -1.14
RTN3-213ENST00000543552 TINCRA0A1B0GVN0 87 aa7.91□□□□□ -1.14
RTN3-213ENST00000543552 ZNF861PO60384 105 aa7.91□□□□□ -1.14
RTN3-213ENST00000543552 KIAA1644Q3SXP7 199 aa7.91□□□□□ -1.14
RTN3-213ENST00000543552 GNB1LQ9BYB4 327 aa7.91□□□□□ -1.14
RTN3-213ENST00000543552 XAGE1AQ9HD64 81 aa7.91□□□□□ -1.14
RTN3-213ENST00000543552 CARHSP1Q9Y2V2 147 aaKnown RBP7.91□□□□□ -1.14
RTN3-213ENST00000543552 C22orf24Q9Y442 160 aa7.91□□□□□ -1.14
RTN3-213ENST00000543552 TMEM218A2RU14 115 aa7.9□□□□□ -1.14
RTN3-213ENST00000543552 KRTAP1-4P0C5Y4 121 aa7.9□□□□□ -1.14
RTN3-213ENST00000543552 COX19Q49B96 90 aa7.9□□□□□ -1.14
RTN3-213ENST00000543552 PDZD11Q5EBL8 140 aa7.9□□□□□ -1.14
RTN3-213ENST00000543552 SMIM1B2RUZ4 78 aa7.89□□□□□ -1.15
RTN3-213ENST00000543552 SNAPINO95295 136 aa7.89□□□□□ -1.15
RTN3-213ENST00000543552 MRPL55Q7Z7F7 128 aaKnown RBP7.89□□□□□ -1.15
RTN3-213ENST00000543552 COX7B2Q8TF08 81 aa7.89□□□□□ -1.15
RTN3-213ENST00000543552 SMCO4Q9NRQ5 59 aa7.89□□□□□ -1.15
RTN3-213ENST00000543552 IGLV5-45A0A087WSX0 123 aa7.88□□□□□ -1.15
RTN3-213ENST00000543552 LINC01546A6NGU7 62 aa7.88□□□□□ -1.15
RTN3-213ENST00000543552 PCP4L1A6NKN8 68 aa7.88□□□□□ -1.15
RTN3-213ENST00000543552 ADCYAP1P18509 176 aa7.88□□□□□ -1.15
RTN3-213ENST00000543552 RPL28P46779 137 aaKnown RBP7.88□□□□□ -1.15
RTN3-213ENST00000543552 ANKRD39Q53RE8 183 aa7.88□□□□□ -1.15
RTN3-213ENST00000543552 FA2HQ7L5A8 372 aa7.88□□□□□ -1.15
RTN3-213ENST00000543552 SEC11CQ9BY50 192 aa7.88□□□□□ -1.15
RTN3-213ENST00000543552 H3BRM9 83 aa7.87□□□□□ -1.15
RTN3-213ENST00000543552 PMVKQ15126 192 aa7.87□□□□□ -1.15
RTN3-213ENST00000543552 MRPL18Q9H0U6 180 aaKnown RBP7.87□□□□□ -1.15
RTN3-213ENST00000543552 CST9LQ9H4G1 147 aa7.87□□□□□ -1.15
RTN3-213ENST00000543552 BCE1O60756 84 aa7.86□□□□□ -1.15
RTN3-213ENST00000543552 SVIPQ8NHG7 77 aa7.86□□□□□ -1.15
RTN3-213ENST00000543552 ATP5LO75964 103 aa7.85□□□□□ -1.15
RTN3-213ENST00000543552 NKAPP1Q8N9T2 125 aa7.85□□□□□ -1.15
RTN3-213ENST00000543552 LPAP08519 4548 aa7.84□□□□□ -1.15
RTN3-213ENST00000543552 SPINK8P0C7L1 97 aa7.84□□□□□ -1.15
RTN3-213ENST00000543552 FABP9Q0Z7S8 132 aa7.84□□□□□ -1.15
RTN3-213ENST00000543552 RHEBQ15382 184 aa7.83□□□□□ -1.16
RTN3-213ENST00000543552 IGLV5-37A0A075B6J1 123 aa7.82□□□□□ -1.16
RTN3-213ENST00000543552 RAB5BP61020 215 aa7.82□□□□□ -1.16
RTN3-213ENST00000543552 PRR4Q16378 134 aa7.82□□□□□ -1.16
RTN3-213ENST00000543552 LINC00167Q96N53 147 aa7.82□□□□□ -1.16
RTN3-213ENST00000543552 RPL37AP8A6NKH3 93 aa7.81□□□□□ -1.16
RTN3-213ENST00000543552 CRYGAP11844 174 aa7.81□□□□□ -1.16
RTN3-213ENST00000543552 GAGE10A6NGK3 116 aa7.8□□□□□ -1.16
RTN3-213ENST00000543552 IGLC3P0DOY3 106 aa7.8□□□□□ -1.16
RTN3-213ENST00000543552 UBE2AP49459 152 aa7.8□□□□□ -1.16
RTN3-213ENST00000543552 NDUFA6P56556 154 aa7.8□□□□□ -1.16
RTN3-213ENST00000543552 SFTA2Q6UW10 78 aa7.8□□□□□ -1.16
RTN3-213ENST00000543552 COMMD7Q86VX2 200 aa7.8□□□□□ -1.16
RTN3-213ENST00000543552 RPS10P5Q9NQ39 176 aa7.8□□□□□ -1.16
RTN3-213ENST00000543552 IGLV5-39A0A0G2JS06 123 aa7.78□□□□□ -1.16
RTN3-213ENST00000543552 HBDP02042 147 aa7.78□□□□□ -1.16
RTN3-213ENST00000543552 COX17Q14061 63 aa7.78□□□□□ -1.16
RTN3-213ENST00000543552 C10orf91Q5T1B1 145 aa7.78□□□□□ -1.16
RTN3-213ENST00000543552 TYMSOSQ8TAI1 123 aa7.78□□□□□ -1.16
RTN3-213ENST00000543552 C12orf57Q99622 126 aa7.78□□□□□ -1.16
RTN3-213ENST00000543552 TMEM238LA0A1B0GVL6 79 aa7.77□□□□□ -1.17
RTN3-213ENST00000543552 LINC00614P0C842 121 aa7.77□□□□□ -1.17
RTN3-213ENST00000543552 PFN2P35080 140 aa7.77□□□□□ -1.17
RTN3-213ENST00000543552 RPL24P83731 157 aaKnown RBP7.77□□□□□ -1.17
RTN3-213ENST00000543552 ERG28Q9UKR5 140 aa7.77□□□□□ -1.17
RTN3-213ENST00000543552 IGKV2-28A0A075B6P5 120 aa7.76□□□□□ -1.17
RTN3-213ENST00000543552 A0A087X002 238 aa7.76□□□□□ -1.17
RTN3-213ENST00000543552 IGKV2D-28P01615 120 aa7.76□□□□□ -1.17
RTN3-213ENST00000543552 ZNF22P17026 224 aaPredicted RBP7.76□□□□□ -1.17
RTN3-213ENST00000543552 TRAPPC1Q9Y5R8 145 aa7.76□□□□□ -1.17
RTN3-213ENST00000543552 TSPAN13O95857 204 aa7.75□□□□□ -1.17
RTN3-213ENST00000543552 FAM229BQ4G0N7 80 aa7.75□□□□□ -1.17
RTN3-213ENST00000543552 KRTAP13-1Q8IUC0 172 aa7.75□□□□□ -1.17
RTN3-213ENST00000543552 C18orf32Q8TCD1 76 aa7.75□□□□□ -1.17
RTN3-213ENST00000543552 CBY1Q9Y3M2 126 aa7.75□□□□□ -1.17
RTN3-213ENST00000543552 A0A096LNJ9 63 aa7.74□□□□□ -1.17
RTN3-213ENST00000543552 SCO1O75880 301 aa7.74□□□□□ -1.17
RTN3-213ENST00000543552 TMEM170BQ5T4T1 132 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms