RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 COX7A2LO14548 114 aa6.84□□□□□ -1.31
SS18-205ENST00000542420 DEFB121Q5J5C9 76 aa6.84□□□□□ -1.31
SS18-205ENST00000542420 C3orf22Q8N5N4 141 aa6.84□□□□□ -1.31
SS18-205ENST00000542420 KLK5Q9Y337 293 aaPredicted RBP6.84□□□□□ -1.31
SS18-205ENST00000542420 DEFB135Q30KP9 77 aa6.83□□□□□ -1.32
SS18-205ENST00000542420 SOSTDC1Q6X4U4 206 aa6.83□□□□□ -1.32
SS18-205ENST00000542420 H7C2G1 150 aa6.83□□□□□ -1.32
SS18-205ENST00000542420 UBE2WQ96B02 151 aa6.83□□□□□ -1.32
SS18-205ENST00000542420 FAM236AA0A1B0GUQ0 79 aa6.82□□□□□ -1.32
SS18-205ENST00000542420 FAM236BA0A1B0GV22 79 aa6.82□□□□□ -1.32
SS18-205ENST00000542420 TRACP01848 142 aa6.82□□□□□ -1.32
SS18-205ENST00000542420 RPS28P62857 69 aaKnown RBP6.82□□□□□ -1.32
SS18-205ENST00000542420 LELP1Q5T871 98 aa6.82□□□□□ -1.32
SS18-205ENST00000542420 CD164L2Q6UWJ8 174 aa6.82□□□□□ -1.32
SS18-205ENST00000542420 LINC00526Q96FQ7 95 aa6.82□□□□□ -1.32
SS18-205ENST00000542420 C2CD3Q4AC94 2353 aa6.82□□□□□ -1.32
SS18-205ENST00000542420 RPL28P46779 137 aaKnown RBP6.82□□□□□ -1.32
SS18-205ENST00000542420 COX17Q14061 63 aa6.82□□□□□ -1.32
SS18-205ENST00000542420 C9orf153Q5TBE3 101 aa6.82□□□□□ -1.32
SS18-205ENST00000542420 NF1P21359 2839 aa6.81□□□□□ -1.32
SS18-205ENST00000542420 UQCRQO14949 82 aa6.81□□□□□ -1.32
SS18-205ENST00000542420 SPATA3Q8NHX4 192 aa6.81□□□□□ -1.32
SS18-205ENST00000542420 JMJD1CQ15652 2540 aa6.81□□□□□ -1.32
SS18-205ENST00000542420 CRPP02741 224 aa6.81□□□□□ -1.32
SS18-205ENST00000542420 IGHV4-30-4P0DP06 118 aa6.81□□□□□ -1.32
SS18-205ENST00000542420 NPC2P61916 151 aa6.81□□□□□ -1.32
SS18-205ENST00000542420 DAND5Q8N907 189 aa6.81□□□□□ -1.32
SS18-205ENST00000542420 IMUPQ9GZP8 106 aa6.81□□□□□ -1.32
SS18-205ENST00000542420 EGFEM1PQ0D2K5 195 aa6.8□□□□□ -1.32
SS18-205ENST00000542420 MIR7-3HGQ8N6C7 128 aa6.8□□□□□ -1.32
SS18-205ENST00000542420 NSD1Q96L73 2696 aaPredicted RBP6.8□□□□□ -1.32
SS18-205ENST00000542420 C2orf82Q6UX34 121 aa6.79□□□□□ -1.32
SS18-205ENST00000542420 C2orf48Q96LS8 159 aa6.79□□□□□ -1.32
SS18-205ENST00000542420 FN1P02751 2386 aaKnown RBP6.79□□□□□ -1.32
SS18-205ENST00000542420 C6orf226Q5I0X4 101 aa6.79□□□□□ -1.32
SS18-205ENST00000542420 C11orf68Q9H3H3 251 aaKnown RBP6.79□□□□□ -1.32
SS18-205ENST00000542420 SND1-IT1Q9HBX3 110 aa6.79□□□□□ -1.32
SS18-205ENST00000542420 H0YGX0 51 aa6.78□□□□□ -1.32
SS18-205ENST00000542420 OXTP01178 125 aa6.78□□□□□ -1.32
SS18-205ENST00000542420 LINC00158P58513 81 aa6.78□□□□□ -1.32
SS18-205ENST00000542420 C5orf38Q86SI9 138 aa6.78□□□□□ -1.32
SS18-205ENST00000542420 CYSTM1Q9H1C7 97 aa6.78□□□□□ -1.32
SS18-205ENST00000542420 TOMM7Q9P0U1 55 aa6.78□□□□□ -1.32
SS18-205ENST00000542420 NDUFC2O95298 119 aa6.78□□□□□ -1.32
SS18-205ENST00000542420 SDIM1Q6ZPB5 146 aa6.78□□□□□ -1.32
SS18-205ENST00000542420 SMCR5Q8TEV8 140 aa6.78□□□□□ -1.32
SS18-205ENST00000542420 NOTCH2Q04721 2471 aa6.78□□□□□ -1.32
SS18-205ENST00000542420 CRYGAP11844 174 aa6.77□□□□□ -1.33
SS18-205ENST00000542420 REG3AQ06141 175 aa6.77□□□□□ -1.33
SS18-205ENST00000542420 PRR34Q9NV39 138 aa6.77□□□□□ -1.33
SS18-205ENST00000542420 CELA1Q9UNI1 258 aa6.77□□□□□ -1.33
SS18-205ENST00000542420 CUBNO60494 3623 aa6.77□□□□□ -1.33
SS18-205ENST00000542420 IGKV3OR2-268A0A0C4DH90 116 aa6.77□□□□□ -1.33
SS18-205ENST00000542420 CCL18P55774 89 aa6.77□□□□□ -1.33
SS18-205ENST00000542420 OR13C6PQ8NH95 151 aa6.77□□□□□ -1.33
SS18-205ENST00000542420 XCL1P47992 114 aa6.76□□□□□ -1.33
SS18-205ENST00000542420 KIAA0087Q14695 138 aa6.76□□□□□ -1.33
SS18-205ENST00000542420 CHCHD10Q8WYQ3 142 aaPredicted RBP6.76□□□□□ -1.33
SS18-205ENST00000542420 CLEC2BQ92478 149 aa6.76□□□□□ -1.33
SS18-205ENST00000542420 SETD2Q9BYW2 2564 aaPredicted RBP6.76□□□□□ -1.33
SS18-205ENST00000542420 IGKV2-28A0A075B6P5 120 aa6.76□□□□□ -1.33
SS18-205ENST00000542420 IGKV2D-28P01615 120 aa6.76□□□□□ -1.33
SS18-205ENST00000542420 COX7CP15954 63 aa6.76□□□□□ -1.33
SS18-205ENST00000542420 A0A096LPF7 62 aa6.75□□□□□ -1.33
SS18-205ENST00000542420 A0A0U1RRA0 63 aa6.75□□□□□ -1.33
SS18-205ENST00000542420 ACYP1P07311 99 aa6.75□□□□□ -1.33
SS18-205ENST00000542420 HIST1H4AP62805 103 aaKnown RBP6.75□□□□□ -1.33
SS18-205ENST00000542420 Q5XG85 94 aa6.75□□□□□ -1.33
SS18-205ENST00000542420 LINC00269Q8N2A0 174 aa6.75□□□□□ -1.33
SS18-205ENST00000542420 GCN1Q92616 2671 aaKnown RBP6.75□□□□□ -1.33
SS18-205ENST00000542420 ANGP03950 147 aaKnown RBP6.75□□□□□ -1.33
SS18-205ENST00000542420 LINC00337Q8N6G1 96 aa6.75□□□□□ -1.33
SS18-205ENST00000542420 GVQW2A0A096LPI5 108 aaPredicted RBP6.74□□□□□ -1.33
SS18-205ENST00000542420 MALP21145 153 aa6.73□□□□□ -1.33
SS18-205ENST00000542420 DPH3Q96FX2 82 aa6.73□□□□□ -1.33
SS18-205ENST00000542420 A0A0J9YWU9 116 aa6.72□□□□□ -1.33
SS18-205ENST00000542420 F8WDY8 70 aa6.72□□□□□ -1.33
SS18-205ENST00000542420 C4orf26Q17RF5 130 aa6.72□□□□□ -1.33
SS18-205ENST00000542420 GAGE2AQ6NT46 116 aa6.72□□□□□ -1.33
SS18-205ENST00000542420 OTOGQ6ZRI0 2925 aa6.72□□□□□ -1.33
SS18-205ENST00000542420 DEFB4AO15263 64 aa6.72□□□□□ -1.33
SS18-205ENST00000542420 LYPD5Q6UWN5 251 aa6.72□□□□□ -1.33
SS18-205ENST00000542420 LINC00643Q86TS7 51 aa6.72□□□□□ -1.33
SS18-205ENST00000542420 SMIM11BQ8TCY0 68 aa6.71□□□□□ -1.33
SS18-205ENST00000542420 hADV29S1A0JD25 119 aa6.71□□□□□ -1.34
SS18-205ENST00000542420 INAFM2P0DMQ5 153 aa6.71□□□□□ -1.34
SS18-205ENST00000542420 PFN2P35080 140 aa6.71□□□□□ -1.34
SS18-205ENST00000542420 KRTAP24-1Q3LI83 254 aa6.71□□□□□ -1.34
SS18-205ENST00000542420 HECTD1Q9ULT8 2610 aa6.7□□□□□ -1.34
SS18-205ENST00000542420 UPK3BQ9BT76 320 aa6.7□□□□□ -1.34
SS18-205ENST00000542420 KRTAP10-11P60412 298 aa6.7□□□□□ -1.34
SS18-205ENST00000542420 LINC00167Q96N53 147 aa6.7□□□□□ -1.34
SS18-205ENST00000542420 BAALC-AS2P0C853 105 aa6.69□□□□□ -1.34
SS18-205ENST00000542420 SPAG11BQ08648 103 aa6.69□□□□□ -1.34
SS18-205ENST00000542420 CLPSL2Q6UWE3 100 aa6.69□□□□□ -1.34
SS18-205ENST00000542420 HRCT1Q6UXD1 115 aa6.69□□□□□ -1.34
SS18-205ENST00000542420 MRAPQ8TCY5 172 aa6.69□□□□□ -1.34
SS18-205ENST00000542420 DNAL4O96015 105 aa6.68□□□□□ -1.34
SS18-205ENST00000542420 TMEM258P61165 79 aa6.68□□□□□ -1.34
SS18-205ENST00000542420 TEP1Q99973 2627 aaKnown RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms