RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 NBPF19A0A087WUL8 3843 aa6.68□□□□□ -1.34
CLIP1-214ENST00000540539 LY6HO94772 140 aa6.68□□□□□ -1.34
CLIP1-214ENST00000540539 DGAT2L7PQ6IED9 249 aa6.68□□□□□ -1.34
CLIP1-214ENST00000540539 RNF5Q99942 180 aa6.68□□□□□ -1.34
CLIP1-214ENST00000540539 LYNX1G3V0Z9 82 aa6.67□□□□□ -1.34
CLIP1-214ENST00000540539 LYNX1P0DP58 116 aa6.67□□□□□ -1.34
CLIP1-214ENST00000540539 KRTAP10-9P60411 292 aa6.67□□□□□ -1.34
CLIP1-214ENST00000540539 COX6A2Q02221 97 aa6.67□□□□□ -1.34
CLIP1-214ENST00000540539 TRAV22A0A0B4J277 110 aa6.67□□□□□ -1.34
CLIP1-214ENST00000540539 ERC2-IT1O76042 136 aa6.67□□□□□ -1.34
CLIP1-214ENST00000540539 LINC01356Q8N9X3 169 aa6.67□□□□□ -1.34
CLIP1-214ENST00000540539 SND1-IT1Q9HBX3 110 aa6.67□□□□□ -1.34
CLIP1-214ENST00000540539 COX7A1P24310 79 aa6.66□□□□□ -1.34
CLIP1-214ENST00000540539 Q6ZVQ6 151 aa6.66□□□□□ -1.34
CLIP1-214ENST00000540539 MED13LQ71F56 2210 aa6.66□□□□□ -1.34
CLIP1-214ENST00000540539 CSMD2Q7Z408 3487 aa6.66□□□□□ -1.34
CLIP1-214ENST00000540539 SMIM1B2RUZ4 78 aa6.65□□□□□ -1.34
CLIP1-214ENST00000540539 C8orf87E5RJ46 101 aa6.65□□□□□ -1.34
CLIP1-214ENST00000540539 TMEM256-PLSCR3K7ERE1 68 aa6.65□□□□□ -1.34
CLIP1-214ENST00000540539 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.65□□□□□ -1.34
CLIP1-214ENST00000540539 K7EQG2 157 aa6.65□□□□□ -1.34
CLIP1-214ENST00000540539 SYCNQ0VAF6 134 aa6.65□□□□□ -1.34
CLIP1-214ENST00000540539 MDFIQ99750 246 aa6.65□□□□□ -1.34
CLIP1-214ENST00000540539 FLNBO75369 2602 aaKnown RBP6.64□□□□□ -1.35
CLIP1-214ENST00000540539 CCDC168Q8NDH2 2452 aa6.64□□□□□ -1.35
CLIP1-214ENST00000540539 TRBV10-1A0A0K0K1A3 114 aa6.64□□□□□ -1.35
CLIP1-214ENST00000540539 K7EMT4 169 aa6.64□□□□□ -1.35
CLIP1-214ENST00000540539 M0R2N4 97 aa6.64□□□□□ -1.35
CLIP1-214ENST00000540539 UBE2BP63146 152 aa6.64□□□□□ -1.35
CLIP1-214ENST00000540539 CXCL6P80162 114 aa6.64□□□□□ -1.35
CLIP1-214ENST00000540539 LINC00167Q96N53 147 aa6.64□□□□□ -1.35
CLIP1-214ENST00000540539 CHCHD7Q9BUK0 85 aa6.64□□□□□ -1.35
CLIP1-214ENST00000540539 NOTCH2Q04721 2471 aa6.63□□□□□ -1.35
CLIP1-214ENST00000540539 BPY2O14599 106 aa6.63□□□□□ -1.35
CLIP1-214ENST00000540539 Q6ZQT0 140 aa6.63□□□□□ -1.35
CLIP1-214ENST00000540539 BAHCC1Q9P281 2608 aa6.63□□□□□ -1.35
CLIP1-214ENST00000540539 ZNF73O43830 326 aaPredicted RBP6.63□□□□□ -1.35
CLIP1-214ENST00000540539 C1orf64Q8NEQ6 169 aa6.63□□□□□ -1.35
CLIP1-214ENST00000540539 NPBQ8NG41 125 aa6.63□□□□□ -1.35
CLIP1-214ENST00000540539 LINC00467Q9BRT7 94 aa6.63□□□□□ -1.35
CLIP1-214ENST00000540539 A8MUN3 132 aa6.62□□□□□ -1.35
CLIP1-214ENST00000540539 LINC00242Q5T6M2 205 aa6.62□□□□□ -1.35
CLIP1-214ENST00000540539 PDZD2O15018 2839 aa6.62□□□□□ -1.35
CLIP1-214ENST00000540539 IGHV3-16A0A0C4DH30 117 aa6.62□□□□□ -1.35
CLIP1-214ENST00000540539 KLLNB2CW77 178 aa6.62□□□□□ -1.35
CLIP1-214ENST00000540539 SCXQ7RTU7 201 aa6.62□□□□□ -1.35
CLIP1-214ENST00000540539 VPS13CQ709C8 3753 aa6.61□□□□□ -1.35
CLIP1-214ENST00000540539 IGHV3OR16-12A0A075B7B8 117 aa6.61□□□□□ -1.35
CLIP1-214ENST00000540539 DEFB113Q30KQ7 82 aa6.61□□□□□ -1.35
CLIP1-214ENST00000540539 HIGD2AQ9BW72 106 aa6.61□□□□□ -1.35
CLIP1-214ENST00000540539 RNASE1P07998 156 aaKnown RBP6.6□□□□□ -1.35
CLIP1-214ENST00000540539 KAAG1Q9UBP8 84 aa6.6□□□□□ -1.35
CLIP1-214ENST00000540539 LYRM9A8MSI8 78 aa6.6□□□□□ -1.35
CLIP1-214ENST00000540539 C16orf90A8MZG2 172 aa6.6□□□□□ -1.35
CLIP1-214ENST00000540539 NDUFS5O43920 106 aa6.6□□□□□ -1.35
CLIP1-214ENST00000540539 CCL18P55774 89 aa6.6□□□□□ -1.35
CLIP1-214ENST00000540539 Q8N814 137 aa6.6□□□□□ -1.35
CLIP1-214ENST00000540539 PROK1P58294 105 aa6.59□□□□□ -1.35
CLIP1-214ENST00000540539 OCR1Q9BZK8 76 aa6.59□□□□□ -1.35
CLIP1-214ENST00000540539 CREBBPQ92793 2442 aa6.59□□□□□ -1.35
CLIP1-214ENST00000540539 IGHV4-30-2A0A087WSY4 118 aa6.59□□□□□ -1.36
CLIP1-214ENST00000540539 IGHV3-73A0A0B4J1V6 119 aa6.59□□□□□ -1.36
CLIP1-214ENST00000540539 DSCR9P59020 149 aa6.59□□□□□ -1.36
CLIP1-214ENST00000540539 Q5VV11 94 aa6.59□□□□□ -1.36
CLIP1-214ENST00000540539 PHF5AQ7RTV0 110 aaKnown RBP6.59□□□□□ -1.36
CLIP1-214ENST00000540539 LINC00269Q8N2A0 174 aa6.59□□□□□ -1.36
CLIP1-214ENST00000540539 ESM1Q9NQ30 184 aa6.59□□□□□ -1.36
CLIP1-214ENST00000540539 LOC110117498A0A087WWA1 95 aa6.58□□□□□ -1.36
CLIP1-214ENST00000540539 CD164L2Q6UWJ8 174 aa6.58□□□□□ -1.36
CLIP1-214ENST00000540539 SPTSSBQ8NFR3 76 aa6.58□□□□□ -1.36
CLIP1-214ENST00000540539 MYO9AB2RTY4 2548 aa6.58□□□□□ -1.36
CLIP1-214ENST00000540539 ITPR3Q14573 2671 aa6.58□□□□□ -1.36
CLIP1-214ENST00000540539 ABCA2Q9BZC7 2435 aa6.58□□□□□ -1.36
CLIP1-214ENST00000540539 ZANQ9Y493 2812 aa6.57□□□□□ -1.36
CLIP1-214ENST00000540539 A0A096LNT2 108 aa6.57□□□□□ -1.36
CLIP1-214ENST00000540539 A6NN06 94 aa6.57□□□□□ -1.36
CLIP1-214ENST00000540539 LY6G6DO95868 133 aa6.57□□□□□ -1.36
CLIP1-214ENST00000540539 IGHV4-61A0A0C4DH41 118 aa6.57□□□□□ -1.36
CLIP1-214ENST00000540539 LMO4P61968 165 aa6.57□□□□□ -1.36
CLIP1-214ENST00000540539 C19orf54Q5BKX5 351 aa6.57□□□□□ -1.36
CLIP1-214ENST00000540539 ECSCRQ19T08 205 aa6.56□□□□□ -1.36
CLIP1-214ENST00000540539 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.56□□□□□ -1.36
CLIP1-214ENST00000540539 SETXQ7Z333 2677 aaKnown RBP6.56□□□□□ -1.36
CLIP1-214ENST00000540539 FLNAP21333 2647 aaKnown RBP6.56□□□□□ -1.36
CLIP1-214ENST00000540539 IGKV3-7A0A075B6H7 116 aa6.56□□□□□ -1.36
CLIP1-214ENST00000540539 IGHV7-81A0A0B4J1V7 117 aa6.56□□□□□ -1.36
CLIP1-214ENST00000540539 LINC00158P58513 81 aa6.56□□□□□ -1.36
CLIP1-214ENST00000540539 NTM-AS1Q6ZSK4 140 aa6.56□□□□□ -1.36
CLIP1-214ENST00000540539 KRTAP1-3Q8IUG1 177 aa6.56□□□□□ -1.36
CLIP1-214ENST00000540539 UBE2L6O14933 153 aa6.55□□□□□ -1.36
CLIP1-214ENST00000540539 PSCAO43653 123 aa6.55□□□□□ -1.36
CLIP1-214ENST00000540539 UBE2AP49459 152 aa6.55□□□□□ -1.36
CLIP1-214ENST00000540539 FAM19A3Q7Z5A8 133 aa6.55□□□□□ -1.36
CLIP1-214ENST00000540539 X6R8D5 127 aa6.55□□□□□ -1.36
CLIP1-214ENST00000540539 CR1P17927 2039 aa6.54□□□□□ -1.36
CLIP1-214ENST00000540539 TRBV6-4A0A1B0GX49 114 aa6.54□□□□□ -1.36
CLIP1-214ENST00000540539 ZFP36P26651 326 aaKnown RBP6.54□□□□□ -1.36
CLIP1-214ENST00000540539 DPM3Q9P2X0 92 aa6.54□□□□□ -1.36
CLIP1-214ENST00000540539 TEX15Q9BXT5 2789 aa6.54□□□□□ -1.36
CLIP1-214ENST00000540539 ATP11AUNQ6ZP68 121 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms