RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 SND1-IT1Q9HBX3 110 aa11.72□□□□□ -0.53
USP28-208ENST00000540438 DAD1P61803 113 aa11.71□□□□□ -0.53
USP28-208ENST00000540438 TRAV8-4A0A0B4J246 113 aa11.71□□□□□ -0.54
USP28-208ENST00000540438 TRBV10-2A0A0K0K1G8 114 aa11.7□□□□□ -0.54
USP28-208ENST00000540438 TTC32Q5I0X7 151 aa11.7□□□□□ -0.54
USP28-208ENST00000540438 PRO0255Q9UI72 69 aa11.7□□□□□ -0.54
USP28-208ENST00000540438 PRB2P02812 416 aaPredicted RBP11.69□□□□□ -0.54
USP28-208ENST00000540438 SLPIP03973 132 aa11.69□□□□□ -0.54
USP28-208ENST00000540438 CCL18P55774 89 aa11.69□□□□□ -0.54
USP28-208ENST00000540438 UBE2WQ96B02 151 aa11.69□□□□□ -0.54
USP28-208ENST00000540438 IGKV2-28A0A075B6P5 120 aa11.69□□□□□ -0.54
USP28-208ENST00000540438 IGKV2D-28P01615 120 aa11.69□□□□□ -0.54
USP28-208ENST00000540438 IFITM1P13164 125 aa11.68□□□□□ -0.54
USP28-208ENST00000540438 LST1O00453 97 aa11.68□□□□□ -0.54
USP28-208ENST00000540438 C6orf223Q8N319 242 aa11.68□□□□□ -0.54
USP28-208ENST00000540438 IGHV4-30-4P0DP06 118 aa11.67□□□□□ -0.54
USP28-208ENST00000540438 C9orf66Q5T8R8 295 aa11.67□□□□□ -0.54
USP28-208ENST00000540438 TIMM17BO60830 172 aa11.66□□□□□ -0.54
USP28-208ENST00000540438 CRPP02741 224 aa11.65□□□□□ -0.54
USP28-208ENST00000540438 KLK12Q9UKR0 248 aa11.65□□□□□ -0.55
USP28-208ENST00000540438 A0A087WYN8 130 aa11.64□□□□□ -0.55
USP28-208ENST00000540438 KIR2DL5BQ8NHK3 375 aa11.64□□□□□ -0.55
USP28-208ENST00000540438 A0A087WZ39 114 aa11.64□□□□□ -0.55
USP28-208ENST00000540438 C9orf129Q5T035 196 aaKnown RBP11.64□□□□□ -0.55
USP28-208ENST00000540438 SS18Q15532 418 aa11.63□□□□□ -0.55
USP28-208ENST00000540438 SMIM11BQ8TCY0 68 aa11.63□□□□□ -0.55
USP28-208ENST00000540438 TENM2Q9NT68 2774 aa11.63□□□□□ -0.55
USP28-208ENST00000540438 CKS1BP61024 79 aa11.63□□□□□ -0.55
USP28-208ENST00000540438 CHCHD10Q8WYQ3 142 aaPredicted RBP11.62□□□□□ -0.55
USP28-208ENST00000540438 MALP21145 153 aa11.62□□□□□ -0.55
USP28-208ENST00000540438 COX7A2LO14548 114 aa11.62□□□□□ -0.55
USP28-208ENST00000540438 BAALC-AS2P0C853 105 aa11.62□□□□□ -0.55
USP28-208ENST00000540438 CSMD3Q7Z407 3707 aa11.61□□□□□ -0.55
USP28-208ENST00000540438 REG3AQ06141 175 aa11.61□□□□□ -0.55
USP28-208ENST00000540438 HERV-K104P63124 156 aa11.61□□□□□ -0.55
USP28-208ENST00000540438 C10orf25Q5T742 122 aa11.61□□□□□ -0.55
USP28-208ENST00000540438 C15orf53Q8NAA6 179 aa11.61□□□□□ -0.55
USP28-208ENST00000540438 FAM19A3Q7Z5A8 133 aa11.6□□□□□ -0.55
USP28-208ENST00000540438 SHISA2Q6UWI4 295 aa11.6□□□□□ -0.55
USP28-208ENST00000540438 Q8NAQ8 132 aa11.6□□□□□ -0.55
USP28-208ENST00000540438 NCR3O14931 201 aa11.58□□□□□ -0.56
USP28-208ENST00000540438 LECT2O14960 151 aa11.58□□□□□ -0.56
USP28-208ENST00000540438 UNQ6190/PRO20217Q6UXQ8 127 aa11.57□□□□□ -0.56
USP28-208ENST00000540438 Q8NDZ9 215 aa11.57□□□□□ -0.56
USP28-208ENST00000540438 APOC4P55056 127 aa11.57□□□□□ -0.56
USP28-208ENST00000540438 CITED1Q99966 193 aa11.57□□□□□ -0.56
USP28-208ENST00000540438 SNCGO76070 127 aa11.57□□□□□ -0.56
USP28-208ENST00000540438 LINC00612Q8N6U2 182 aa11.57□□□□□ -0.56
USP28-208ENST00000540438 KRTAP10-11P60412 298 aa11.56□□□□□ -0.56
USP28-208ENST00000540438 STAB2Q8WWQ8 2551 aa11.55□□□□□ -0.56
USP28-208ENST00000540438 RNF183Q96D59 192 aa11.55□□□□□ -0.56
USP28-208ENST00000540438 CFAP161Q6P656 301 aa11.54□□□□□ -0.56
USP28-208ENST00000540438 HIGD2BQ4VC39 106 aa11.54□□□□□ -0.56
USP28-208ENST00000540438 XAGE1AQ9HD64 81 aa11.54□□□□□ -0.56
USP28-208ENST00000540438 SPART-AS1P0CW21 52 aa11.54□□□□□ -0.56
USP28-208ENST00000540438 GAGE2AQ6NT46 116 aa11.54□□□□□ -0.56
USP28-208ENST00000540438 LYRM9A8MSI8 78 aa11.53□□□□□ -0.56
USP28-208ENST00000540438 WFDC10BQ8IUB3 73 aa11.53□□□□□ -0.56
USP28-208ENST00000540438 C22orf24Q9Y442 160 aa11.53□□□□□ -0.56
USP28-208ENST00000540438 TRAV13-2A0A0B4J235 113 aa11.52□□□□□ -0.56
USP28-208ENST00000540438 H3BT86 120 aa11.52□□□□□ -0.56
USP28-208ENST00000540438 Q6ZTC4 211 aa11.52□□□□□ -0.56
USP28-208ENST00000540438 C3orf56Q8N813 242 aa11.52□□□□□ -0.56
USP28-208ENST00000540438 C14orf132Q9NPU4 83 aa11.52□□□□□ -0.56
USP28-208ENST00000540438 SMIM9A6NGZ8 99 aa11.52□□□□□ -0.57
USP28-208ENST00000540438 IBA57-AS1B1ANH7 110 aa11.52□□□□□ -0.57
USP28-208ENST00000540438 DNAL4O96015 105 aa11.52□□□□□ -0.57
USP28-208ENST00000540438 GAGE2BQ13066 116 aa11.51□□□□□ -0.57
USP28-208ENST00000540438 GAGE2EQ4V326 116 aa11.51□□□□□ -0.57
USP28-208ENST00000540438 GAGE2DQ9UEU5 116 aa11.51□□□□□ -0.57
USP28-208ENST00000540438 MRAPQ8TCY5 172 aa11.51□□□□□ -0.57
USP28-208ENST00000540438 A0A1B0GUV1 79 aa11.5□□□□□ -0.57
USP28-208ENST00000540438 KIAA0087Q14695 138 aa11.5□□□□□ -0.57
USP28-208ENST00000540438 CD164L2Q6UWJ8 174 aa11.49□□□□□ -0.57
USP28-208ENST00000540438 ANAPC13Q9BS18 74 aa11.49□□□□□ -0.57
USP28-208ENST00000540438 NANOS2P60321 138 aaKnown RBP11.49□□□□□ -0.57
USP28-208ENST00000540438 MRPL23Q16540 153 aaKnown RBP11.49□□□□□ -0.57
USP28-208ENST00000540438 SMCR5Q8TEV8 140 aa11.49□□□□□ -0.57
USP28-208ENST00000540438 COPS9Q8WXC6 57 aa11.49□□□□□ -0.57
USP28-208ENST00000540438 SPAG11BQ08648 103 aa11.48□□□□□ -0.57
USP28-208ENST00000540438 KRTAP24-1Q3LI83 254 aa11.48□□□□□ -0.57
USP28-208ENST00000540438 RPL28P46779 137 aaKnown RBP11.47□□□□□ -0.57
USP28-208ENST00000540438 CYSRT1A8MQ03 144 aa11.47□□□□□ -0.57
USP28-208ENST00000540438 ENHOQ6UWT2 76 aa11.46□□□□□ -0.57
USP28-208ENST00000540438 Q8IZM0 81 aa11.46□□□□□ -0.57
USP28-208ENST00000540438 MIFP14174 115 aa11.46□□□□□ -0.57
USP28-208ENST00000540438 RPL18AQ02543 176 aaKnown RBP11.46□□□□□ -0.58
USP28-208ENST00000540438 LYPD5Q6UWN5 251 aa11.45□□□□□ -0.58
USP28-208ENST00000540438 LYSTQ99698 3801 aa11.45□□□□□ -0.58
USP28-208ENST00000540438 KPRPQ5T749 579 aaPredicted RBP11.45□□□□□ -0.58
USP28-208ENST00000540438 A0A0J9YWU9 116 aa11.44□□□□□ -0.58
USP28-208ENST00000540438 C6orf99Q4VX62 202 aa11.43□□□□□ -0.58
USP28-208ENST00000540438 SCGB1A1P11684 91 aa11.43□□□□□ -0.58
USP28-208ENST00000540438 S100A7L2Q5SY68 101 aa11.42□□□□□ -0.58
USP28-208ENST00000540438 TRACP01848 142 aa11.41□□□□□ -0.58
USP28-208ENST00000540438 WFDC9Q8NEX5 89 aa11.41□□□□□ -0.58
USP28-208ENST00000540438 COL7A1Q02388 2944 aa11.41□□□□□ -0.58
USP28-208ENST00000540438 CMYA5Q8N3K9 4069 aa11.41□□□□□ -0.58
USP28-208ENST00000540438 NHLRC4P0CG21 123 aaPredicted RBP11.41□□□□□ -0.58
USP28-208ENST00000540438 M0QXV9 152 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms