RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 LINC00469Q8N7U9 141 aa7.17□□□□□ -1.26
RTN3-209ENST00000538995 PACRGQ96M98 296 aaPredicted RBP7.17□□□□□ -1.26
RTN3-209ENST00000538995 RPS10P5Q9NQ39 176 aa7.17□□□□□ -1.26
RTN3-209ENST00000538995 UBR4Q5T4S7 5183 aa7.17□□□□□ -1.26
RTN3-209ENST00000538995 S100A6P06703 90 aa7.16□□□□□ -1.26
RTN3-209ENST00000538995 PRSS2P07478 247 aa7.16□□□□□ -1.26
RTN3-209ENST00000538995 Q8IZM0 81 aa7.16□□□□□ -1.26
RTN3-209ENST00000538995 SCGB3A1Q96QR1 104 aa7.16□□□□□ -1.26
RTN3-209ENST00000538995 MRPL18Q9H0U6 180 aaKnown RBP7.16□□□□□ -1.26
RTN3-209ENST00000538995 GEMIN7Q9H840 131 aaKnown RBP7.16□□□□□ -1.26
RTN3-209ENST00000538995 TNXBP22105 4242 aa7.16□□□□□ -1.26
RTN3-209ENST00000538995 NDUFC2-KCTD14E9PQ53 114 aa7.15□□□□□ -1.26
RTN3-209ENST00000538995 FABP9Q0Z7S8 132 aa7.15□□□□□ -1.26
RTN3-209ENST00000538995 C2orf82Q6UX34 121 aa7.15□□□□□ -1.26
RTN3-209ENST00000538995 FA2HQ7L5A8 372 aa7.15□□□□□ -1.26
RTN3-209ENST00000538995 A6NJY4 79 aa7.14□□□□□ -1.27
RTN3-209ENST00000538995 CKS1BP61024 79 aa7.14□□□□□ -1.27
RTN3-209ENST00000538995 SRSF9Q13242 221 aaKnown RBP eCLIP7.14□□□□□ -1.27
RTN3-209ENST00000538995 REG3GQ6UW15 175 aa7.14□□□□□ -1.27
RTN3-209ENST00000538995 LINC01600Q96MT4 127 aa7.14□□□□□ -1.27
RTN3-209ENST00000538995 SMCO4Q9NRQ5 59 aa7.14□□□□□ -1.27
RTN3-209ENST00000538995 CDKN2A-AS1Q9UH64 79 aa7.14□□□□□ -1.27
RTN3-209ENST00000538995 IGLV5-45A0A087WSX0 123 aa7.13□□□□□ -1.27
RTN3-209ENST00000538995 TINCRA0A1B0GVN0 87 aa7.13□□□□□ -1.27
RTN3-209ENST00000538995 CXCL5P42830 114 aa7.13□□□□□ -1.27
RTN3-209ENST00000538995 GAGE2EQ4V326 116 aa7.13□□□□□ -1.27
RTN3-209ENST00000538995 C6orf226Q5I0X4 101 aa7.13□□□□□ -1.27
RTN3-209ENST00000538995 PHF5AQ7RTV0 110 aaKnown RBP7.13□□□□□ -1.27
RTN3-209ENST00000538995 SVBPQ8N300 66 aa7.13□□□□□ -1.27
RTN3-209ENST00000538995 TOMM7Q9P0U1 55 aa7.13□□□□□ -1.27
RTN3-209ENST00000538995 GAGE2DQ9UEU5 116 aa7.13□□□□□ -1.27
RTN3-209ENST00000538995 PSORS1C2Q9UIG4 136 aa7.13□□□□□ -1.27
RTN3-209ENST00000538995 SNAPINO95295 136 aa7.12□□□□□ -1.27
RTN3-209ENST00000538995 CST9LQ9H4G1 147 aa7.12□□□□□ -1.27
RTN3-209ENST00000538995 FAM168BA1KXE4 195 aa7.11□□□□□ -1.27
RTN3-209ENST00000538995 SMIM1B2RUZ4 78 aa7.11□□□□□ -1.27
RTN3-209ENST00000538995 F8VRH5 84 aa7.11□□□□□ -1.27
RTN3-209ENST00000538995 APOC3P02656 99 aa7.11□□□□□ -1.27
RTN3-209ENST00000538995 S100A12P80511 92 aa7.11□□□□□ -1.27
RTN3-209ENST00000538995 ODF1Q14990 250 aa7.11□□□□□ -1.27
RTN3-209ENST00000538995 PMVKQ15126 192 aa7.11□□□□□ -1.27
RTN3-209ENST00000538995 PDZD11Q5EBL8 140 aa7.11□□□□□ -1.27
RTN3-209ENST00000538995 FAM19A5Q7Z5A7 132 aaPredicted RBP7.11□□□□□ -1.27
RTN3-209ENST00000538995 PLA2G2DQ9UNK4 145 aa7.11□□□□□ -1.27
RTN3-209ENST00000538995 M0QXV9 152 aa7.1□□□□□ -1.27
RTN3-209ENST00000538995 C1orf137Q5JT78 98 aa7.1□□□□□ -1.27
RTN3-209ENST00000538995 C9orf129Q5T035 196 aaKnown RBP7.1□□□□□ -1.27
RTN3-209ENST00000538995 TRAPPC1Q9Y5R8 145 aa7.1□□□□□ -1.27
RTN3-209ENST00000538995 KRTAP7-1Q8IUC3 87 aa7.09□□□□□ -1.27
RTN3-209ENST00000538995 C18orf32Q8TCD1 76 aa7.09□□□□□ -1.27
RTN3-209ENST00000538995 A0A096LNJ9 63 aa7.08□□□□□ -1.28
RTN3-209ENST00000538995 H3BRM9 83 aa7.08□□□□□ -1.28
RTN3-209ENST00000538995 IGLV7-43P04211 117 aa7.08□□□□□ -1.28
RTN3-209ENST00000538995 LINC00614P0C842 121 aa7.08□□□□□ -1.28
RTN3-209ENST00000538995 RAB5BP61020 215 aa7.08□□□□□ -1.28
RTN3-209ENST00000538995 COX7B2Q8TF08 81 aa7.08□□□□□ -1.28
RTN3-209ENST00000538995 TMA7Q9Y2S6 64 aaKnown RBP7.08□□□□□ -1.28
RTN3-209ENST00000538995 HBDP02042 147 aa7.07□□□□□ -1.28
RTN3-209ENST00000538995 IGLC3P0DOY3 106 aa7.07□□□□□ -1.28
RTN3-209ENST00000538995 UBE2BP63146 152 aa7.07□□□□□ -1.28
RTN3-209ENST00000538995 DIRC1Q969H9 104 aa7.07□□□□□ -1.28
RTN3-209ENST00000538995 URB1-AS1Q96HZ7 61 aa7.07□□□□□ -1.28
RTN3-209ENST00000538995 KRTAP10-8P60410 259 aa7.06□□□□□ -1.28
RTN3-209ENST00000538995 KRTAP11-1Q8IUC1 163 aa7.06□□□□□ -1.28
RTN3-209ENST00000538995 ATP5LO75964 103 aa7.05□□□□□ -1.28
RTN3-209ENST00000538995 SPINK8P0C7L1 97 aa7.05□□□□□ -1.28
RTN3-209ENST00000538995 LBHQ53QV2 105 aaPredicted RBP7.05□□□□□ -1.28
RTN3-209ENST00000538995 YPEL4Q96NS1 127 aa7.05□□□□□ -1.28
RTN3-209ENST00000538995 XAGE1AQ9HD64 81 aa7.05□□□□□ -1.28
RTN3-209ENST00000538995 TP73-AS1Q9UF72 201 aa7.05□□□□□ -1.28
RTN3-209ENST00000538995 IGLV5-39A0A0G2JS06 123 aa7.04□□□□□ -1.28
RTN3-209ENST00000538995 H0Y9J4 135 aa7.04□□□□□ -1.28
RTN3-209ENST00000538995 ZNF22P17026 224 aaPredicted RBP7.03□□□□□ -1.28
RTN3-209ENST00000538995 NDUFA6P56556 154 aa7.03□□□□□ -1.28
RTN3-209ENST00000538995 XP32Q5T750 250 aa7.03□□□□□ -1.28
RTN3-209ENST00000538995 C22orf24Q9Y442 160 aa7.03□□□□□ -1.28
RTN3-209ENST00000538995 NUPR1O60356 82 aa7.02□□□□□ -1.29
RTN3-209ENST00000538995 PMCHL1Q16048 86 aa7.02□□□□□ -1.29
RTN3-209ENST00000538995 CHCHD1Q96BP2 118 aaKnown RBP7.02□□□□□ -1.29
RTN3-209ENST00000538995 SFTA2Q6UW10 78 aa7.01□□□□□ -1.29
RTN3-209ENST00000538995 MRPL55Q7Z7F7 128 aaKnown RBP7.01□□□□□ -1.29
RTN3-209ENST00000538995 IGLV5-37A0A075B6J1 123 aa7□□□□□ -1.29
RTN3-209ENST00000538995 BAGE3Q86Y29 109 aa7□□□□□ -1.29
RTN3-209ENST00000538995 IGLV1-50A0A075B6I6 118 aa6.99□□□□□ -1.29
RTN3-209ENST00000538995 C11orf86A6NJI1 115 aa6.99□□□□□ -1.29
RTN3-209ENST00000538995 ZNF861PO60384 105 aa6.99□□□□□ -1.29
RTN3-209ENST00000538995 TRAV12-1A0A0B4J245 112 aa6.98□□□□□ -1.29
RTN3-209ENST00000538995 COX17Q14061 63 aa6.98□□□□□ -1.29
RTN3-209ENST00000538995 TMEM170BQ5T4T1 132 aa6.98□□□□□ -1.29
RTN3-209ENST00000538995 CBLN2Q8IUK8 224 aa6.98□□□□□ -1.29
RTN3-209ENST00000538995 CHTOPQ9Y3Y2 248 aaKnown RBP6.98□□□□□ -1.29
RTN3-209ENST00000538995 KRTAP1-4P0C5Y4 121 aa6.97□□□□□ -1.29
RTN3-209ENST00000538995 NKAPP1Q8N9T2 125 aa6.97□□□□□ -1.29
RTN3-209ENST00000538995 IFI27L1Q96BM0 104 aa6.97□□□□□ -1.29
RTN3-209ENST00000538995 ERG28Q9UKR5 140 aa6.97□□□□□ -1.29
RTN3-209ENST00000538995 LRP2P98164 4655 aa6.96□□□□□ -1.29
RTN3-209ENST00000538995 BCE1O60756 84 aa6.96□□□□□ -1.3
RTN3-209ENST00000538995 RPL13AP40429 203 aaKnown RBP6.96□□□□□ -1.3
RTN3-209ENST00000538995 RPL28P46779 137 aaKnown RBP6.96□□□□□ -1.3
RTN3-209ENST00000538995 LINC00518Q8N0U6 118 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms