RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 IGHV3-66A0A0C4DH42 116 aa4.81□□□□□ -1.64
PTPRB-203ENST00000538174 A0A0J9YY99 117 aa4.81□□□□□ -1.64
PTPRB-203ENST00000538174 TMEM223A0PJW6 202 aa4.81□□□□□ -1.64
PTPRB-203ENST00000538174 GNRH2O43555 120 aa4.81□□□□□ -1.64
PTPRB-203ENST00000538174 IGHV3-35A0A0C4DH35 117 aa4.81□□□□□ -1.64
PTPRB-203ENST00000538174 H3BMM0 161 aa4.81□□□□□ -1.64
PTPRB-203ENST00000538174 LINC00588Q9Y4M8 146 aa4.81□□□□□ -1.64
PTPRB-203ENST00000538174 ROS1P08922 2347 aa4.81□□□□□ -1.64
PTPRB-203ENST00000538174 COX7A2LO14548 114 aa4.8□□□□□ -1.64
PTPRB-203ENST00000538174 IGHV3-53P01767 116 aa4.8□□□□□ -1.64
PTPRB-203ENST00000538174 HIST1H4GQ99525 98 aa4.8□□□□□ -1.64
PTPRB-203ENST00000538174 IGHV4-59P01825 116 aa4.8□□□□□ -1.64
PTPRB-203ENST00000538174 ZNF56Q15929 161 aa4.8□□□□□ -1.64
PTPRB-203ENST00000538174 SERP2Q8N6R1 65 aa4.8□□□□□ -1.64
PTPRB-203ENST00000538174 RPL39LQ96EH5 51 aaKnown RBP4.8□□□□□ -1.64
PTPRB-203ENST00000538174 TENM1Q9UKZ4 2725 aa4.8□□□□□ -1.64
PTPRB-203ENST00000538174 HERC2O95714 4834 aa4.8□□□□□ -1.64
PTPRB-203ENST00000538174 IGHV3-30P01768 117 aa4.79□□□□□ -1.64
PTPRB-203ENST00000538174 IGHV3-30-5P0DP03 117 aa4.79□□□□□ -1.64
PTPRB-203ENST00000538174 LY6EQ16553 131 aa4.79□□□□□ -1.64
PTPRB-203ENST00000538174 NHP2Q9NX24 153 aaKnown RBP4.79□□□□□ -1.64
PTPRB-203ENST00000538174 LINC00474Q9P2X8 69 aa4.79□□□□□ -1.64
PTPRB-203ENST00000538174 C6orf99Q4VX62 202 aa4.79□□□□□ -1.64
PTPRB-203ENST00000538174 PHF5AQ7RTV0 110 aaKnown RBP4.79□□□□□ -1.64
PTPRB-203ENST00000538174 DNAH9Q9NYC9 4486 aa4.79□□□□□ -1.64
PTPRB-203ENST00000538174 MUC4Q99102 2169 aa4.79□□□□□ -1.64
PTPRB-203ENST00000538174 IGHV3OR16-10A0A075B7F0 116 aa4.79□□□□□ -1.64
PTPRB-203ENST00000538174 ZNF815PA8K554 130 aa4.79□□□□□ -1.64
PTPRB-203ENST00000538174 IGHV3-11P01762 117 aa4.79□□□□□ -1.64
PTPRB-203ENST00000538174 MGPP08493 103 aa4.79□□□□□ -1.64
PTPRB-203ENST00000538174 HIST1H4AP62805 103 aaKnown RBP4.79□□□□□ -1.64
PTPRB-203ENST00000538174 NTN5Q8WTR8 489 aaPredicted RBP4.79□□□□□ -1.64
PTPRB-203ENST00000538174 IGHV3OR16-8A0A075B7F1 116 aa4.78□□□□□ -1.64
PTPRB-203ENST00000538174 IGHV3-49A0A0A0MS15 119 aa4.78□□□□□ -1.64
PTPRB-203ENST00000538174 RBM3P98179 157 aaKnown RBP4.78□□□□□ -1.64
PTPRB-203ENST00000538174 SFTA2Q6UW10 78 aa4.78□□□□□ -1.64
PTPRB-203ENST00000538174 Q6ZS46 218 aa4.78□□□□□ -1.64
PTPRB-203ENST00000538174 VWFP04275 2813 aa4.78□□□□□ -1.64
PTPRB-203ENST00000538174 IGLV4-3A0A075B6K6 122 aa4.78□□□□□ -1.64
PTPRB-203ENST00000538174 IGHV3OR16-13A0A075B7E8 117 aa4.78□□□□□ -1.64
PTPRB-203ENST00000538174 IGHV3-74A0A0B4J1X5 117 aa4.78□□□□□ -1.64
PTPRB-203ENST00000538174 TRAV12-3A0A0B4J271 114 aa4.78□□□□□ -1.64
PTPRB-203ENST00000538174 INSP01308 110 aa4.78□□□□□ -1.64
PTPRB-203ENST00000538174 PRR3P79522 188 aaKnown RBP4.78□□□□□ -1.64
PTPRB-203ENST00000538174 CIRBPQ14011 172 aaKnown RBP4.78□□□□□ -1.64
PTPRB-203ENST00000538174 DEFB114Q30KQ6 69 aa4.78□□□□□ -1.64
PTPRB-203ENST00000538174 TMEM243Q9BU79 118 aa4.78□□□□□ -1.64
PTPRB-203ENST00000538174 ZNF706Q9Y5V0 76 aaPredicted RBP4.78□□□□□ -1.64
PTPRB-203ENST00000538174 TGP01266 2768 aa4.77□□□□□ -1.65
PTPRB-203ENST00000538174 TRBV30A0A0K0K1B3 111 aa4.77□□□□□ -1.65
PTPRB-203ENST00000538174 VSIG2Q96IQ7 327 aa4.77□□□□□ -1.65
PTPRB-203ENST00000538174 ZNF22P17026 224 aaPredicted RBP4.77□□□□□ -1.65
PTPRB-203ENST00000538174 FXYD7P58549 80 aa4.77□□□□□ -1.65
PTPRB-203ENST00000538174 RBMY1FQ15415 496 aaKnown RBP4.77□□□□□ -1.65
PTPRB-203ENST00000538174 S100A7L2Q5SY68 101 aa4.77□□□□□ -1.65
PTPRB-203ENST00000538174 PRO1854Q9UHT4 67 aa4.77□□□□□ -1.65
PTPRB-203ENST00000538174 TIMM8BQ9Y5J9 83 aaPredicted RBP4.77□□□□□ -1.65
PTPRB-203ENST00000538174 A0A0J9YXV3 536 aa4.76□□□□□ -1.65
PTPRB-203ENST00000538174 CCKP06307 115 aa4.76□□□□□ -1.65
PTPRB-203ENST00000538174 PSMB2P49721 201 aa4.76□□□□□ -1.65
PTPRB-203ENST00000538174 SYNJ2BPP57105 145 aa4.76□□□□□ -1.65
PTPRB-203ENST00000538174 REG3AQ06141 175 aa4.76□□□□□ -1.65
PTPRB-203ENST00000538174 C9orf66Q5T8R8 295 aa4.76□□□□□ -1.65
PTPRB-203ENST00000538174 KRTAP10-11P60412 298 aa4.75□□□□□ -1.65
PTPRB-203ENST00000538174 FHL2Q14192 279 aa4.75□□□□□ -1.65
PTPRB-203ENST00000538174 C5orf38Q86SI9 138 aa4.75□□□□□ -1.65
PTPRB-203ENST00000538174 FAM104AQ969W3 186 aa4.75□□□□□ -1.65
PTPRB-203ENST00000538174 CHCHD7Q9BUK0 85 aa4.75□□□□□ -1.65
PTPRB-203ENST00000538174 UBE2D4Q9Y2X8 147 aa4.75□□□□□ -1.65
PTPRB-203ENST00000538174 IGLV5-39A0A0G2JS06 123 aa4.75□□□□□ -1.65
PTPRB-203ENST00000538174 NKAPP1Q8N9T2 125 aa4.75□□□□□ -1.65
PTPRB-203ENST00000538174 TMEM263Q8WUH6 116 aaKnown RBP4.74□□□□□ -1.65
PTPRB-203ENST00000538174 NDUFA1O15239 70 aa4.74□□□□□ -1.65
PTPRB-203ENST00000538174 CFC1BP0CG36 223 aa4.74□□□□□ -1.65
PTPRB-203ENST00000538174 CFC1P0CG37 223 aa4.74□□□□□ -1.65
PTPRB-203ENST00000538174 LITAFQ99732 161 aa4.74□□□□□ -1.65
PTPRB-203ENST00000538174 OPRPNQ99935 248 aaPredicted RBP4.74□□□□□ -1.65
PTPRB-203ENST00000538174 DNAH7Q8WXX0 4024 aa4.74□□□□□ -1.65
PTPRB-203ENST00000538174 SACSQ9NZJ4 4579 aa4.74□□□□□ -1.65
PTPRB-203ENST00000538174 IGHV3OR16-9A0A0B4J2B5 98 aa4.73□□□□□ -1.65
PTPRB-203ENST00000538174 IGHV3-33P01772 117 aa4.73□□□□□ -1.65
PTPRB-203ENST00000538174 SPINK13Q1W4C9 94 aa4.73□□□□□ -1.65
PTPRB-203ENST00000538174 DEFB121Q5J5C9 76 aa4.73□□□□□ -1.65
PTPRB-203ENST00000538174 CHCHD10Q8WYQ3 142 aaPredicted RBP4.73□□□□□ -1.65
PTPRB-203ENST00000538174 TRBV6-4A0A1B0GX49 114 aa4.73□□□□□ -1.65
PTPRB-203ENST00000538174 UBE2BP63146 152 aa4.73□□□□□ -1.65
PTPRB-203ENST00000538174 MIAQ16674 131 aa4.73□□□□□ -1.65
PTPRB-203ENST00000538174 FAM218AQ96MZ4 157 aa4.73□□□□□ -1.65
PTPRB-203ENST00000538174 DEFB131AP59861 70 aa4.72□□□□□ -1.65
PTPRB-203ENST00000538174 C7orf65Q6ZTY9 151 aa4.72□□□□□ -1.65
PTPRB-203ENST00000538174 LINC00643Q86TS7 51 aa4.72□□□□□ -1.65
PTPRB-203ENST00000538174 LINC00612Q8N6U2 182 aa4.72□□□□□ -1.65
PTPRB-203ENST00000538174 C16orf74Q96GX8 76 aa4.72□□□□□ -1.65
PTPRB-203ENST00000538174 IGHV6-1A0A0B4J1U7 121 aa4.72□□□□□ -1.65
PTPRB-203ENST00000538174 SLC25A20O43772 301 aa4.72□□□□□ -1.65
PTPRB-203ENST00000538174 IGHV3-30-3P0DP02 117 aa4.72□□□□□ -1.65
PTPRB-203ENST00000538174 TMEM170BQ5T4T1 132 aa4.72□□□□□ -1.65
PTPRB-203ENST00000538174 LYPD5Q6UWN5 251 aa4.72□□□□□ -1.65
PTPRB-203ENST00000538174 TMEM61Q8N0U2 210 aa4.72□□□□□ -1.65
PTPRB-203ENST00000538174 DYNLRB2Q8TF09 96 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms