RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 CBLN2Q8IUK8 224 aa6.88□□□□□ -1.31
VPS28-214ENST00000531032 PRR26Q8N8Z3 221 aa6.88□□□□□ -1.31
VPS28-214ENST00000531032 TIMM17AQ99595 171 aa6.88□□□□□ -1.31
VPS28-214ENST00000531032 GEMIN7Q9H840 131 aaKnown RBP6.88□□□□□ -1.31
VPS28-214ENST00000531032 TOMM7Q9P0U1 55 aa6.88□□□□□ -1.31
VPS28-214ENST00000531032 HERVK_113P63121 156 aa6.87□□□□□ -1.31
VPS28-214ENST00000531032 LINC00173Q6ZV60 143 aa6.87□□□□□ -1.31
VPS28-214ENST00000531032 FAM19A5Q7Z5A7 132 aaPredicted RBP6.87□□□□□ -1.31
VPS28-214ENST00000531032 KRTAP7-1Q8IUC3 87 aa6.87□□□□□ -1.31
VPS28-214ENST00000531032 TOMM6Q96B49 74 aa6.87□□□□□ -1.31
VPS28-214ENST00000531032 SCGB3A1Q96QR1 104 aa6.87□□□□□ -1.31
VPS28-214ENST00000531032 AMELXQ99217 191 aa6.87□□□□□ -1.31
VPS28-214ENST00000531032 MRPL18Q9H0U6 180 aaKnown RBP6.87□□□□□ -1.31
VPS28-214ENST00000531032 LINC01549A6NIU2 74 aa6.86□□□□□ -1.31
VPS28-214ENST00000531032 IGIPA6NJ69 53 aa6.86□□□□□ -1.31
VPS28-214ENST00000531032 SCO1O75880 301 aa6.86□□□□□ -1.31
VPS28-214ENST00000531032 CKS1BP61024 79 aa6.86□□□□□ -1.31
VPS28-214ENST00000531032 GAGE2EQ4V326 116 aa6.86□□□□□ -1.31
VPS28-214ENST00000531032 LINC01561Q8N1V8 128 aa6.86□□□□□ -1.31
VPS28-214ENST00000531032 GAGE2DQ9UEU5 116 aa6.86□□□□□ -1.31
VPS28-214ENST00000531032 LPAP08519 4548 aa6.86□□□□□ -1.31
VPS28-214ENST00000531032 TRBV30A0A0K0K1B3 111 aa6.85□□□□□ -1.31
VPS28-214ENST00000531032 KRTAP1-4P0C5Y4 121 aa6.85□□□□□ -1.31
VPS28-214ENST00000531032 ERASQ7Z444 233 aa6.85□□□□□ -1.31
VPS28-214ENST00000531032 ALKBH7Q9BT30 221 aaPredicted RBP6.85□□□□□ -1.31
VPS28-214ENST00000531032 IGLV1-50A0A075B6I6 118 aa6.84□□□□□ -1.31
VPS28-214ENST00000531032 NDUFC2-KCTD14E9PQ53 114 aa6.84□□□□□ -1.31
VPS28-214ENST00000531032 M0QXV9 152 aa6.84□□□□□ -1.31
VPS28-214ENST00000531032 C6orf226Q5I0X4 101 aa6.84□□□□□ -1.31
VPS28-214ENST00000531032 C2orf82Q6UX34 121 aa6.84□□□□□ -1.31
VPS28-214ENST00000531032 LINC00469Q8N7U9 141 aa6.84□□□□□ -1.31
VPS28-214ENST00000531032 C9orf129Q5T035 196 aaKnown RBP6.83□□□□□ -1.32
VPS28-214ENST00000531032 Q8IZM0 81 aa6.83□□□□□ -1.32
VPS28-214ENST00000531032 CDKN2A-AS1Q9UH64 79 aa6.83□□□□□ -1.32
VPS28-214ENST00000531032 TRAPPC1Q9Y5R8 145 aa6.83□□□□□ -1.32
VPS28-214ENST00000531032 ATP6V1G1O75348 118 aa6.82□□□□□ -1.32
VPS28-214ENST00000531032 UBE2BP63146 152 aa6.82□□□□□ -1.32
VPS28-214ENST00000531032 FAM19A3Q7Z5A8 133 aa6.82□□□□□ -1.32
VPS28-214ENST00000531032 COLCA2A8K830 154 aa6.81□□□□□ -1.32
VPS28-214ENST00000531032 CXCL5P42830 114 aa6.81□□□□□ -1.32
VPS28-214ENST00000531032 TINCRA0A1B0GVN0 87 aa6.8□□□□□ -1.32
VPS28-214ENST00000531032 LINC01546A6NGU7 62 aa6.8□□□□□ -1.32
VPS28-214ENST00000531032 RPL13AP40429 203 aaKnown RBP6.8□□□□□ -1.32
VPS28-214ENST00000531032 NDUFA6P56556 154 aa6.8□□□□□ -1.32
VPS28-214ENST00000531032 PMVKQ15126 192 aa6.8□□□□□ -1.32
VPS28-214ENST00000531032 F8VRH5 84 aa6.79□□□□□ -1.32
VPS28-214ENST00000531032 H3BRM9 83 aa6.79□□□□□ -1.32
VPS28-214ENST00000531032 SMIM1B2RUZ4 78 aa6.78□□□□□ -1.32
VPS28-214ENST00000531032 HBDP02042 147 aa6.78□□□□□ -1.32
VPS28-214ENST00000531032 RAB5BP61020 215 aa6.78□□□□□ -1.32
VPS28-214ENST00000531032 PDZD11Q5EBL8 140 aa6.78□□□□□ -1.32
VPS28-214ENST00000531032 C18orf32Q8TCD1 76 aa6.78□□□□□ -1.32
VPS28-214ENST00000531032 COX7B2Q8TF08 81 aa6.78□□□□□ -1.32
VPS28-214ENST00000531032 CST9LQ9H4G1 147 aa6.78□□□□□ -1.32
VPS28-214ENST00000531032 ZNF861PO60384 105 aa6.77□□□□□ -1.33
VPS28-214ENST00000531032 SPINK8P0C7L1 97 aa6.77□□□□□ -1.33
VPS28-214ENST00000531032 LINC00614P0C842 121 aa6.77□□□□□ -1.33
VPS28-214ENST00000531032 IGLV5-45A0A087WSX0 123 aa6.76□□□□□ -1.33
VPS28-214ENST00000531032 NUPR1O60356 82 aa6.76□□□□□ -1.33
VPS28-214ENST00000531032 S100A1P23297 94 aa6.76□□□□□ -1.33
VPS28-214ENST00000531032 PMCHL1Q16048 86 aa6.76□□□□□ -1.33
VPS28-214ENST00000531032 URB1-AS1Q96HZ7 61 aa6.76□□□□□ -1.33
VPS28-214ENST00000531032 XAGE1AQ9HD64 81 aa6.76□□□□□ -1.33
VPS28-214ENST00000531032 C22orf24Q9Y442 160 aa6.76□□□□□ -1.33
VPS28-214ENST00000531032 ATP5LO75964 103 aa6.75□□□□□ -1.33
VPS28-214ENST00000531032 TRGC2P03986 189 aa6.75□□□□□ -1.33
VPS28-214ENST00000531032 LBHQ53QV2 105 aaPredicted RBP6.75□□□□□ -1.33
VPS28-214ENST00000531032 IGLC3P0DOY3 106 aa6.74□□□□□ -1.33
VPS28-214ENST00000531032 PRR4Q16378 134 aa6.74□□□□□ -1.33
VPS28-214ENST00000531032 TP73-AS1Q9UF72 201 aa6.74□□□□□ -1.33
VPS28-214ENST00000531032 A0A096LNJ9 63 aa6.73□□□□□ -1.33
VPS28-214ENST00000531032 MUC2Q02817 5179 aa6.73□□□□□ -1.33
VPS28-214ENST00000531032 ZNF22P17026 224 aaPredicted RBP6.72□□□□□ -1.33
VPS28-214ENST00000531032 TMEM170BQ5T4T1 132 aa6.72□□□□□ -1.33
VPS28-214ENST00000531032 MRPL55Q7Z7F7 128 aaKnown RBP6.72□□□□□ -1.33
VPS28-214ENST00000531032 BAGE3Q86Y29 109 aa6.72□□□□□ -1.33
VPS28-214ENST00000531032 BCE1O60756 84 aa6.71□□□□□ -1.34
VPS28-214ENST00000531032 RPL28P46779 137 aaKnown RBP6.71□□□□□ -1.34
VPS28-214ENST00000531032 CHCHD1Q96BP2 118 aaKnown RBP6.71□□□□□ -1.34
VPS28-214ENST00000531032 A0A087X002 238 aa6.7□□□□□ -1.34
VPS28-214ENST00000531032 HSBP1O75506 76 aa6.7□□□□□ -1.34
VPS28-214ENST00000531032 LINC00310P59036 64 aa6.7□□□□□ -1.34
VPS28-214ENST00000531032 NKAPP1Q8N9T2 125 aa6.7□□□□□ -1.34
VPS28-214ENST00000531032 C11orf86A6NJI1 115 aa6.69□□□□□ -1.34
VPS28-214ENST00000531032 PFN2P35080 140 aa6.69□□□□□ -1.34
VPS28-214ENST00000531032 IFI27L1Q96BM0 104 aa6.69□□□□□ -1.34
VPS28-214ENST00000531032 LINC00167Q96N53 147 aa6.69□□□□□ -1.34
VPS28-214ENST00000531032 CHTOPQ9Y3Y2 248 aaKnown RBP6.69□□□□□ -1.34
VPS28-214ENST00000531032 IGLV5-39A0A0G2JS06 123 aa6.68□□□□□ -1.34
VPS28-214ENST00000531032 TSPAN13O95857 204 aa6.68□□□□□ -1.34
VPS28-214ENST00000531032 CRYGAP11844 174 aa6.68□□□□□ -1.34
VPS28-214ENST00000531032 SFTA2Q6UW10 78 aa6.68□□□□□ -1.34
VPS28-214ENST00000531032 IGLV5-37A0A075B6J1 123 aa6.67□□□□□ -1.34
VPS28-214ENST00000531032 GAGE10A6NGK3 116 aa6.67□□□□□ -1.34
VPS28-214ENST00000531032 RPL37AP8A6NKH3 93 aa6.67□□□□□ -1.34
VPS28-214ENST00000531032 KRTAP13-1Q8IUC0 172 aa6.67□□□□□ -1.34
VPS28-214ENST00000531032 TYMSOSQ8TAI1 123 aa6.67□□□□□ -1.34
VPS28-214ENST00000531032 ERG28Q9UKR5 140 aa6.67□□□□□ -1.34
VPS28-214ENST00000531032 H0Y8G0 127 aa6.66□□□□□ -1.34
VPS28-214ENST00000531032 HIST1H2BKO60814 126 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms