RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 KIR2DL5BQ8NHK3 375 aa13.4□□□□□ -0.26
VPS28-213ENST00000530983 FN1P02751 2386 aaKnown RBP13.39□□□□□ -0.27
VPS28-213ENST00000530983 PFN2P35080 140 aa13.39□□□□□ -0.27
VPS28-213ENST00000530983 LINC00612Q8N6U2 182 aa13.39□□□□□ -0.27
VPS28-213ENST00000530983 UQCRQO14949 82 aa13.39□□□□□ -0.27
VPS28-213ENST00000530983 HILS1P60008 231 aa13.39□□□□□ -0.27
VPS28-213ENST00000530983 ITPR2Q14571 2701 aa13.39□□□□□ -0.27
VPS28-213ENST00000530983 GCN1Q92616 2671 aaKnown RBP13.38□□□□□ -0.27
VPS28-213ENST00000530983 A0A087WYN8 130 aa13.38□□□□□ -0.27
VPS28-213ENST00000530983 MALP21145 153 aa13.38□□□□□ -0.27
VPS28-213ENST00000530983 GYPEP15421 78 aa13.37□□□□□ -0.27
VPS28-213ENST00000530983 LINC00526Q96FQ7 95 aa13.37□□□□□ -0.27
VPS28-213ENST00000530983 GAGE2AQ6NT46 116 aa13.36□□□□□ -0.27
VPS28-213ENST00000530983 J3QKU1 62 aa13.35□□□□□ -0.27
VPS28-213ENST00000530983 C11orf68Q9H3H3 251 aaKnown RBP13.35□□□□□ -0.27
VPS28-213ENST00000530983 INAFM2P0DMQ5 153 aa13.35□□□□□ -0.27
VPS28-213ENST00000530983 XCL1P47992 114 aa13.35□□□□□ -0.27
VPS28-213ENST00000530983 C6orf226Q5I0X4 101 aa13.34□□□□□ -0.27
VPS28-213ENST00000530983 KRTAP10-3P60369 221 aa13.34□□□□□ -0.27
VPS28-213ENST00000530983 KLK5Q9Y337 293 aaPredicted RBP13.34□□□□□ -0.27
VPS28-213ENST00000530983 X6R8D5 127 aa13.34□□□□□ -0.27
VPS28-213ENST00000530983 NBEAL2Q6ZNJ1 2754 aa13.34□□□□□ -0.27
VPS28-213ENST00000530983 A0A1B0GUV1 79 aa13.33□□□□□ -0.28
VPS28-213ENST00000530983 PAX4O43316 350 aa13.33□□□□□ -0.28
VPS28-213ENST00000530983 DNAL4O96015 105 aa13.33□□□□□ -0.28
VPS28-213ENST00000530983 H0YGX0 51 aa13.32□□□□□ -0.28
VPS28-213ENST00000530983 SS18Q15532 418 aa13.31□□□□□ -0.28
VPS28-213ENST00000530983 CLPSL2Q6UWE3 100 aa13.31□□□□□ -0.28
VPS28-213ENST00000530983 C2orf48Q96LS8 159 aa13.31□□□□□ -0.28
VPS28-213ENST00000530983 COX7CP15954 63 aa13.31□□□□□ -0.28
VPS28-213ENST00000530983 C9orf129Q5T035 196 aaKnown RBP13.31□□□□□ -0.28
VPS28-213ENST00000530983 A0A096LPF7 62 aa13.3□□□□□ -0.28
VPS28-213ENST00000530983 Q8IZM0 81 aa13.3□□□□□ -0.28
VPS28-213ENST00000530983 LINC00482Q8N8I6 264 aa13.3□□□□□ -0.28
VPS28-213ENST00000530983 PRO0255Q9UI72 69 aa13.3□□□□□ -0.28
VPS28-213ENST00000530983 LOC107984640A0A0U1RRK4 108 aa13.3□□□□□ -0.28
VPS28-213ENST00000530983 HIST1H4AP62805 103 aaKnown RBP13.3□□□□□ -0.28
VPS28-213ENST00000530983 LY6G6DO95868 133 aa13.29□□□□□ -0.28
VPS28-213ENST00000530983 OR13C6PQ8NH95 151 aa13.29□□□□□ -0.28
VPS28-213ENST00000530983 VWFP04275 2813 aa13.28□□□□□ -0.28
VPS28-213ENST00000530983 LECT2O14960 151 aa13.28□□□□□ -0.28
VPS28-213ENST00000530983 SMIM9A6NGZ8 99 aa13.26□□□□□ -0.29
VPS28-213ENST00000530983 OBSCN-AS1Q96MR7 158 aa13.25□□□□□ -0.29
VPS28-213ENST00000530983 UNC79Q9P2D8 2635 aa13.25□□□□□ -0.29
VPS28-213ENST00000530983 CRYGAP11844 174 aa13.25□□□□□ -0.29
VPS28-213ENST00000530983 SMR3AQ99954 134 aa13.25□□□□□ -0.29
VPS28-213ENST00000530983 C14orf132Q9NPU4 83 aa13.25□□□□□ -0.29
VPS28-213ENST00000530983 LINC01561Q8N1V8 128 aa13.24□□□□□ -0.29
VPS28-213ENST00000530983 ATOX1O00244 68 aa13.24□□□□□ -0.29
VPS28-213ENST00000530983 HELZ2Q9BYK8 2649 aaKnown RBP13.23□□□□□ -0.29
VPS28-213ENST00000530983 KIAA0087Q14695 138 aa13.23□□□□□ -0.29
VPS28-213ENST00000530983 LINC00269Q8N2A0 174 aa13.23□□□□□ -0.29
VPS28-213ENST00000530983 SPATA3Q8NHX4 192 aa13.23□□□□□ -0.29
VPS28-213ENST00000530983 SLPIP03973 132 aa13.23□□□□□ -0.29
VPS28-213ENST00000530983 CYSTM1Q9H1C7 97 aa13.23□□□□□ -0.29
VPS28-213ENST00000530983 HIVEP2P31629 2446 aa13.22□□□□□ -0.29
VPS28-213ENST00000530983 A0A1B0GX51 115 aa13.22□□□□□ -0.29
VPS28-213ENST00000530983 hADV29S1A0JD25 119 aa13.22□□□□□ -0.29
VPS28-213ENST00000530983 Q8N3U1 123 aa13.22□□□□□ -0.29
VPS28-213ENST00000530983 IGKV3D-7A0A0C4DH55 119 aa13.21□□□□□ -0.29
VPS28-213ENST00000530983 LYRM9A8MSI8 78 aa13.21□□□□□ -0.29
VPS28-213ENST00000530983 DEFB4AO15263 64 aa13.21□□□□□ -0.29
VPS28-213ENST00000530983 NANOS2P60321 138 aaKnown RBP13.21□□□□□ -0.29
VPS28-213ENST00000530983 PRR3P79522 188 aaKnown RBP13.21□□□□□ -0.29
VPS28-213ENST00000530983 CD164L2Q6UWJ8 174 aa13.21□□□□□ -0.29
VPS28-213ENST00000530983 LINC00846Q9NV44 126 aa13.21□□□□□ -0.3
VPS28-213ENST00000530983 J3KT08 172 aa13.2□□□□□ -0.3
VPS28-213ENST00000530983 RPL18AQ02543 176 aaKnown RBP13.2□□□□□ -0.3
VPS28-213ENST00000530983 NCR3O14931 201 aa13.19□□□□□ -0.3
VPS28-213ENST00000530983 CHCHD10Q8WYQ3 142 aaPredicted RBP13.19□□□□□ -0.3
VPS28-213ENST00000530983 IGLV10-54A0A075B6I4 117 aa13.19□□□□□ -0.3
VPS28-213ENST00000530983 DEFB135Q30KP9 77 aa13.19□□□□□ -0.3
VPS28-213ENST00000530983 Q6JHZ5 121 aa13.18□□□□□ -0.3
VPS28-213ENST00000530983 KMT2BQ9UMN6 2715 aaPredicted RBP13.18□□□□□ -0.3
VPS28-213ENST00000530983 ANGP03950 147 aaKnown RBP13.17□□□□□ -0.3
VPS28-213ENST00000530983 FAM19A5Q7Z5A7 132 aaPredicted RBP13.17□□□□□ -0.3
VPS28-213ENST00000530983 ORMDL1Q9P0S3 153 aa13.17□□□□□ -0.3
VPS28-213ENST00000530983 A0A087WVE0 104 aa13.17□□□□□ -0.3
VPS28-213ENST00000530983 REG3AQ06141 175 aa13.17□□□□□ -0.3
VPS28-213ENST00000530983 COX17Q14061 63 aa13.17□□□□□ -0.3
VPS28-213ENST00000530983 NDUFC2O95298 119 aa13.16□□□□□ -0.3
VPS28-213ENST00000530983 FASNP49327 2511 aaKnown RBP13.16□□□□□ -0.3
VPS28-213ENST00000530983 IGHV4-28A0A0C4DH34 117 aa13.16□□□□□ -0.3
VPS28-213ENST00000530983 C9orf116Q5BN46 136 aaPredicted RBP13.16□□□□□ -0.3
VPS28-213ENST00000530983 LINC00167Q96N53 147 aa13.16□□□□□ -0.3
VPS28-213ENST00000530983 RPS28P62857 69 aaKnown RBP13.15□□□□□ -0.3
VPS28-213ENST00000530983 C9orf66Q5T8R8 295 aa13.13□□□□□ -0.31
VPS28-213ENST00000530983 Q8NDZ9 215 aa13.13□□□□□ -0.31
VPS28-213ENST00000530983 Q8N814 137 aa13.13□□□□□ -0.31
VPS28-213ENST00000530983 DAD1P61803 113 aa13.12□□□□□ -0.31
VPS28-213ENST00000530983 SERP2Q8N6R1 65 aa13.12□□□□□ -0.31
VPS28-213ENST00000530983 UPK3BQ9BT76 320 aa13.12□□□□□ -0.31
VPS28-213ENST00000530983 CELA1Q9UNI1 258 aa13.12□□□□□ -0.31
VPS28-213ENST00000530983 TENM1Q9UKZ4 2725 aa13.11□□□□□ -0.31
VPS28-213ENST00000530983 USP17L23D6RBM5 183 aa13.09□□□□□ -0.31
VPS28-213ENST00000530983 APOC4P55056 127 aa13.09□□□□□ -0.31
VPS28-213ENST00000530983 Q8NAQ8 132 aa13.09□□□□□ -0.31
VPS28-213ENST00000530983 C10orf25Q5T742 122 aa13.07□□□□□ -0.32
VPS28-213ENST00000530983 CCKP06307 115 aa13.07□□□□□ -0.32
VPS28-213ENST00000530983 C6orf223Q8N319 242 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms