RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 Q6ZVH6 145 aa14.21□□□□□ -0.13
VPS28-212ENST00000530836 ORAOV1Q8WV07 137 aa14.21□□□□□ -0.13
VPS28-212ENST00000530836 CXCL5P42830 114 aa14.2□□□□□ -0.14
VPS28-212ENST00000530836 RMI2Q96E14 147 aa14.2□□□□□ -0.14
VPS28-212ENST00000530836 GCSHP23434 173 aa14.19□□□□□ -0.14
VPS28-212ENST00000530836 COL5A1-AS1Q5SY13 56 aa14.19□□□□□ -0.14
VPS28-212ENST00000530836 RYR2Q92736 4967 aa14.18□□□□□ -0.14
VPS28-212ENST00000530836 A6NDN8 102 aa14.18□□□□□ -0.14
VPS28-212ENST00000530836 CFAP161Q6P656 301 aa14.18□□□□□ -0.14
VPS28-212ENST00000530836 KRTAP26-1Q6PEX3 210 aa14.18□□□□□ -0.14
VPS28-212ENST00000530836 HYDINQ4G0P3 5121 aa14.17□□□□□ -0.14
VPS28-212ENST00000530836 IGKV2D-24A0A075B6R9 120 aa14.16□□□□□ -0.14
VPS28-212ENST00000530836 CKS1BP61024 79 aa14.16□□□□□ -0.14
VPS28-212ENST00000530836 SPANXDQ9BXN6 97 aa14.16□□□□□ -0.14
VPS28-212ENST00000530836 SPANXCQ9NY87 97 aa14.16□□□□□ -0.14
VPS28-212ENST00000530836 RYR3Q15413 4870 aa14.16□□□□□ -0.14
VPS28-212ENST00000530836 KMT2AQ03164 3969 aa14.16□□□□□ -0.14
VPS28-212ENST00000530836 TMEM238LA0A1B0GVL6 79 aa14.15□□□□□ -0.14
VPS28-212ENST00000530836 A6NJY4 79 aa14.15□□□□□ -0.14
VPS28-212ENST00000530836 PTTG1IPP53801 180 aa14.15□□□□□ -0.14
VPS28-212ENST00000530836 LITAFQ99732 161 aa14.15□□□□□ -0.14
VPS28-212ENST00000530836 COX11Q9Y6N1 276 aa14.15□□□□□ -0.14
VPS28-212ENST00000530836 KIAA0087Q14695 138 aa14.15□□□□□ -0.14
VPS28-212ENST00000530836 MEIG1Q5JSS6 88 aa14.15□□□□□ -0.14
VPS28-212ENST00000530836 COPS9Q8WXC6 57 aa14.14□□□□□ -0.15
VPS28-212ENST00000530836 Q9HAA7 133 aa14.13□□□□□ -0.15
VPS28-212ENST00000530836 IFITM1P13164 125 aa14.12□□□□□ -0.15
VPS28-212ENST00000530836 FXYD2P54710 66 aa14.12□□□□□ -0.15
VPS28-212ENST00000530836 SPAG11BQ08648 103 aa14.12□□□□□ -0.15
VPS28-212ENST00000530836 TTC32Q5I0X7 151 aa14.12□□□□□ -0.15
VPS28-212ENST00000530836 RPL24P83731 157 aaKnown RBP14.11□□□□□ -0.15
VPS28-212ENST00000530836 ADAMTSL4-AS1Q5T5F5 129 aa14.1□□□□□ -0.15
VPS28-212ENST00000530836 PPDPFQ9H3Y8 114 aa14.09□□□□□ -0.15
VPS28-212ENST00000530836 F8WDY8 70 aa14.08□□□□□ -0.15
VPS28-212ENST00000530836 DNAH6Q9C0G6 4158 aa14.08□□□□□ -0.16
VPS28-212ENST00000530836 ZNF561-AS1K7EIQ3 104 aa14.08□□□□□ -0.16
VPS28-212ENST00000530836 COX17Q14061 63 aa14.08□□□□□ -0.16
VPS28-212ENST00000530836 MUSTN1Q8IVN3 82 aa14.08□□□□□ -0.16
VPS28-212ENST00000530836 SMIM13P0DJ93 91 aa14.07□□□□□ -0.16
VPS28-212ENST00000530836 ERG28Q9UKR5 140 aa14.07□□□□□ -0.16
VPS28-212ENST00000530836 M0R2N4 97 aa14.06□□□□□ -0.16
VPS28-212ENST00000530836 C2orf82Q6UX34 121 aa14.06□□□□□ -0.16
VPS28-212ENST00000530836 NTN5Q8WTR8 489 aaPredicted RBP14.06□□□□□ -0.16
VPS28-212ENST00000530836 Q6ZR54 194 aa14.05□□□□□ -0.16
VPS28-212ENST00000530836 NHP2Q9NX24 153 aaKnown RBP14.05□□□□□ -0.16
VPS28-212ENST00000530836 NBDYA0A0U1RRE5 68 aa14.04□□□□□ -0.16
VPS28-212ENST00000530836 A0A1B0GWB2 263 aa14.04□□□□□ -0.16
VPS28-212ENST00000530836 LINC00158P58513 81 aa14.04□□□□□ -0.16
VPS28-212ENST00000530836 C15orf56Q8N910 161 aa14.04□□□□□ -0.16
VPS28-212ENST00000530836 C2orf48Q96LS8 159 aa14.04□□□□□ -0.16
VPS28-212ENST00000530836 GVQW2A0A096LPI5 108 aaPredicted RBP14.04□□□□□ -0.16
VPS28-212ENST00000530836 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.04□□□□□ -0.16
VPS28-212ENST00000530836 LINC00308Q8TCZ7 52 aa14.03□□□□□ -0.16
VPS28-212ENST00000530836 A0A0U1RRA0 63 aa14.02□□□□□ -0.16
VPS28-212ENST00000530836 KRTAP1-5Q9BYS1 174 aa14.02□□□□□ -0.16
VPS28-212ENST00000530836 A4D1N5 150 aa14.01□□□□□ -0.17
VPS28-212ENST00000530836 DAND5Q8N907 189 aa14.01□□□□□ -0.17
VPS28-212ENST00000530836 TRBV30A0A0K0K1B3 111 aa14.01□□□□□ -0.17
VPS28-212ENST00000530836 PFN2P35080 140 aa14.01□□□□□ -0.17
VPS28-212ENST00000530836 UNQ6190/PRO20217Q6UXQ8 127 aa14.01□□□□□ -0.17
VPS28-212ENST00000530836 C6orf223Q8N319 242 aa14.01□□□□□ -0.17
VPS28-212ENST00000530836 MIR7-3HGQ8N6C7 128 aa14.01□□□□□ -0.17
VPS28-212ENST00000530836 TAX1BP3O14907 124 aa14□□□□□ -0.17
VPS28-212ENST00000530836 HIGD2BQ4VC39 106 aa14□□□□□ -0.17
VPS28-212ENST00000530836 CAMK2N2Q96S95 79 aa14□□□□□ -0.17
VPS28-212ENST00000530836 A0A0B4J2C4 111 aa13.97□□□□□ -0.17
VPS28-212ENST00000530836 CFC1BP0CG36 223 aa13.97□□□□□ -0.17
VPS28-212ENST00000530836 CFC1P0CG37 223 aa13.97□□□□□ -0.17
VPS28-212ENST00000530836 USP17L23D6RBM5 183 aa13.97□□□□□ -0.17
VPS28-212ENST00000530836 NPC2P61916 151 aa13.97□□□□□ -0.17
VPS28-212ENST00000530836 LINC00526Q96FQ7 95 aa13.97□□□□□ -0.17
VPS28-212ENST00000530836 PSCAO43653 123 aa13.96□□□□□ -0.17
VPS28-212ENST00000530836 C10orf25Q5T742 122 aa13.96□□□□□ -0.17
VPS28-212ENST00000530836 K7ERJ3 54 aa13.95□□□□□ -0.18
VPS28-212ENST00000530836 RAB37Q96AX2 223 aa13.95□□□□□ -0.18
VPS28-212ENST00000530836 DNAH2Q9P225 4427 aa13.95□□□□□ -0.18
VPS28-212ENST00000530836 LOC107984156A0A0G2JMH3 177 aa13.94□□□□□ -0.18
VPS28-212ENST00000530836 C9orf118A6NHY6 69 aa13.94□□□□□ -0.18
VPS28-212ENST00000530836 ARL17AQ8IVW1 177 aa13.94□□□□□ -0.18
VPS28-212ENST00000530836 C6orf48Q9UBA6 75 aa13.94□□□□□ -0.18
VPS28-212ENST00000530836 C1orf134Q5TEV5 83 aa13.93□□□□□ -0.18
VPS28-212ENST00000530836 SOSTDC1Q6X4U4 206 aa13.93□□□□□ -0.18
VPS28-212ENST00000530836 PRO1854Q9UHT4 67 aa13.93□□□□□ -0.18
VPS28-212ENST00000530836 SYCNQ0VAF6 134 aa13.93□□□□□ -0.18
VPS28-212ENST00000530836 A0A1B0GV90 55 aa13.92□□□□□ -0.18
VPS28-212ENST00000530836 EIF4EBP3O60516 100 aaPredicted RBP13.92□□□□□ -0.18
VPS28-212ENST00000530836 RNF151Q2KHN1 245 aa13.92□□□□□ -0.18
VPS28-212ENST00000530836 C9orf116Q5BN46 136 aaPredicted RBP13.92□□□□□ -0.18
VPS28-212ENST00000530836 Q6ZRU5 148 aa13.91□□□□□ -0.18
VPS28-212ENST00000530836 DNAH10Q8IVF4 4471 aa13.91□□□□□ -0.18
VPS28-212ENST00000530836 C14orf177Q52M58 125 aa13.9□□□□□ -0.18
VPS28-212ENST00000530836 SND1-IT1Q9HBX3 110 aa13.9□□□□□ -0.18
VPS28-212ENST00000530836 RTL8CO15255 209 aa13.89□□□□□ -0.19
VPS28-212ENST00000530836 CARD19Q96LW7 228 aa13.88□□□□□ -0.19
VPS28-212ENST00000530836 PGPEP1Q9NXJ5 209 aa13.87□□□□□ -0.19
VPS28-212ENST00000530836 H3BUT2 72 aa13.86□□□□□ -0.19
VPS28-212ENST00000530836 NDUFC2-KCTD14E9PQ53 114 aa13.86□□□□□ -0.19
VPS28-212ENST00000530836 NDUFC2O95298 119 aa13.86□□□□□ -0.19
VPS28-212ENST00000530836 TRAV13-2A0A0B4J235 113 aa13.85□□□□□ -0.19
VPS28-212ENST00000530836 Q6ZRN7 208 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms