RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 GAGE2EQ4V326 116 aa6.4□□□□□ -1.38
CPSF1-203ENST00000527916 C6orf226Q5I0X4 101 aa6.4□□□□□ -1.38
CPSF1-203ENST00000527916 C2orf82Q6UX34 121 aa6.4□□□□□ -1.38
CPSF1-203ENST00000527916 Q8IZM0 81 aa6.4□□□□□ -1.38
CPSF1-203ENST00000527916 GAGE2DQ9UEU5 116 aa6.4□□□□□ -1.38
CPSF1-203ENST00000527916 FAM168BA1KXE4 195 aa6.39□□□□□ -1.39
CPSF1-203ENST00000527916 IGLV7-43P04211 117 aa6.39□□□□□ -1.39
CPSF1-203ENST00000527916 CKS1BP61024 79 aa6.39□□□□□ -1.39
CPSF1-203ENST00000527916 C1orf137Q5JT78 98 aa6.39□□□□□ -1.39
CPSF1-203ENST00000527916 C10orf91Q5T1B1 145 aa6.39□□□□□ -1.39
CPSF1-203ENST00000527916 LCE2AQ5TA79 106 aaPredicted RBP6.39□□□□□ -1.39
CPSF1-203ENST00000527916 KRTAP7-1Q8IUC3 87 aa6.38□□□□□ -1.39
CPSF1-203ENST00000527916 SCGB3A1Q96QR1 104 aa6.38□□□□□ -1.39
CPSF1-203ENST00000527916 ALKBH7Q9BT30 221 aaPredicted RBP6.38□□□□□ -1.39
CPSF1-203ENST00000527916 GEMIN7Q9H840 131 aaKnown RBP6.38□□□□□ -1.39
CPSF1-203ENST00000527916 CDKN2A-AS1Q9UH64 79 aa6.38□□□□□ -1.39
CPSF1-203ENST00000527916 TINCRA0A1B0GVN0 87 aa6.37□□□□□ -1.39
CPSF1-203ENST00000527916 C9orf129Q5T035 196 aaKnown RBP6.37□□□□□ -1.39
CPSF1-203ENST00000527916 FAM19A5Q7Z5A7 132 aaPredicted RBP6.37□□□□□ -1.39
CPSF1-203ENST00000527916 KRTAP11-1Q8IUC1 163 aa6.37□□□□□ -1.39
CPSF1-203ENST00000527916 PRR26Q8N8Z3 221 aa6.37□□□□□ -1.39
CPSF1-203ENST00000527916 DIRC1Q969H9 104 aa6.37□□□□□ -1.39
CPSF1-203ENST00000527916 TOMM7Q9P0U1 55 aa6.37□□□□□ -1.39
CPSF1-203ENST00000527916 IGLV5-45A0A087WSX0 123 aa6.36□□□□□ -1.39
CPSF1-203ENST00000527916 F8VRH5 84 aa6.36□□□□□ -1.39
CPSF1-203ENST00000527916 M0QXV9 152 aa6.36□□□□□ -1.39
CPSF1-203ENST00000527916 CXCL5P42830 114 aa6.36□□□□□ -1.39
CPSF1-203ENST00000527916 RHEBQ15382 184 aa6.36□□□□□ -1.39
CPSF1-203ENST00000527916 CARHSP1Q9Y2V2 147 aaKnown RBP6.36□□□□□ -1.39
CPSF1-203ENST00000527916 PDZD11Q5EBL8 140 aa6.35□□□□□ -1.39
CPSF1-203ENST00000527916 COMMD7Q86VX2 200 aa6.35□□□□□ -1.39
CPSF1-203ENST00000527916 MRPL18Q9H0U6 180 aaKnown RBP6.35□□□□□ -1.39
CPSF1-203ENST00000527916 CST9LQ9H4G1 147 aa6.35□□□□□ -1.39
CPSF1-203ENST00000527916 IGLV1-50A0A075B6I6 118 aa6.34□□□□□ -1.39
CPSF1-203ENST00000527916 SMIM1B2RUZ4 78 aa6.34□□□□□ -1.39
CPSF1-203ENST00000527916 H0Y9J4 135 aa6.34□□□□□ -1.39
CPSF1-203ENST00000527916 UBE2BP63146 152 aa6.34□□□□□ -1.39
CPSF1-203ENST00000527916 FABP9Q0Z7S8 132 aa6.34□□□□□ -1.39
CPSF1-203ENST00000527916 RPS10P5Q9NQ39 176 aa6.34□□□□□ -1.39
CPSF1-203ENST00000527916 PMVKQ15126 192 aa6.33□□□□□ -1.4
CPSF1-203ENST00000527916 LBHQ53QV2 105 aaPredicted RBP6.33□□□□□ -1.4
CPSF1-203ENST00000527916 FA2HQ7L5A8 372 aa6.33□□□□□ -1.4
CPSF1-203ENST00000527916 LINC00469Q8N7U9 141 aa6.33□□□□□ -1.4
CPSF1-203ENST00000527916 SMCO4Q9NRQ5 59 aa6.33□□□□□ -1.4
CPSF1-203ENST00000527916 TP73-AS1Q9UF72 201 aa6.33□□□□□ -1.4
CPSF1-203ENST00000527916 C22orf24Q9Y442 160 aa6.33□□□□□ -1.4
CPSF1-203ENST00000527916 NUPR1O60356 82 aa6.32□□□□□ -1.4
CPSF1-203ENST00000527916 COX7B2Q8TF08 81 aa6.32□□□□□ -1.4
CPSF1-203ENST00000527916 LINC00614P0C842 121 aa6.31□□□□□ -1.4
CPSF1-203ENST00000527916 RPL13AP40429 203 aaKnown RBP6.31□□□□□ -1.4
CPSF1-203ENST00000527916 XAGE1AQ9HD64 81 aa6.31□□□□□ -1.4
CPSF1-203ENST00000527916 H3BRM9 83 aa6.3□□□□□ -1.4
CPSF1-203ENST00000527916 ZNF861PO60384 105 aa6.3□□□□□ -1.4
CPSF1-203ENST00000527916 TRAPPC1Q9Y5R8 145 aa6.3□□□□□ -1.4
CPSF1-203ENST00000527916 A0A096LNJ9 63 aa6.29□□□□□ -1.4
CPSF1-203ENST00000527916 KRTAP1-4P0C5Y4 121 aa6.29□□□□□ -1.4
CPSF1-203ENST00000527916 IGLC3P0DOY3 106 aa6.29□□□□□ -1.4
CPSF1-203ENST00000527916 MRPL55Q7Z7F7 128 aaKnown RBP6.29□□□□□ -1.4
CPSF1-203ENST00000527916 C18orf32Q8TCD1 76 aa6.29□□□□□ -1.4
CPSF1-203ENST00000527916 URB1-AS1Q96HZ7 61 aa6.29□□□□□ -1.4
CPSF1-203ENST00000527916 SPINK8P0C7L1 97 aa6.28□□□□□ -1.4
CPSF1-203ENST00000527916 RAB5BP61020 215 aa6.28□□□□□ -1.4
CPSF1-203ENST00000527916 IGLV5-37A0A075B6J1 123 aa6.27□□□□□ -1.41
CPSF1-203ENST00000527916 IGLV5-39A0A0G2JS06 123 aa6.27□□□□□ -1.41
CPSF1-203ENST00000527916 ATP5LO75964 103 aa6.27□□□□□ -1.41
CPSF1-203ENST00000527916 SNAPINO95295 136 aa6.27□□□□□ -1.41
CPSF1-203ENST00000527916 HBDP02042 147 aa6.27□□□□□ -1.41
CPSF1-203ENST00000527916 SVBPQ8N300 66 aa6.27□□□□□ -1.41
CPSF1-203ENST00000527916 APOC3P02656 99 aa6.26□□□□□ -1.41
CPSF1-203ENST00000527916 ZNF22P17026 224 aaPredicted RBP6.26□□□□□ -1.41
CPSF1-203ENST00000527916 NDUFA5Q16718 116 aa6.26□□□□□ -1.41
CPSF1-203ENST00000527916 LINC00167Q96N53 147 aa6.26□□□□□ -1.41
CPSF1-203ENST00000527916 FSIP2Q5CZC0 6907 aa6.26□□□□□ -1.41
CPSF1-203ENST00000527916 BCE1O60756 84 aa6.25□□□□□ -1.41
CPSF1-203ENST00000527916 RPL28P46779 137 aaKnown RBP6.25□□□□□ -1.41
CPSF1-203ENST00000527916 NDUFA6P56556 154 aa6.25□□□□□ -1.41
CPSF1-203ENST00000527916 COX17Q14061 63 aa6.25□□□□□ -1.41
CPSF1-203ENST00000527916 SFTA2Q6UW10 78 aa6.24□□□□□ -1.41
CPSF1-203ENST00000527916 YPEL4Q96NS1 127 aa6.24□□□□□ -1.41
CPSF1-203ENST00000527916 TSPAN13O95857 204 aa6.23□□□□□ -1.41
CPSF1-203ENST00000527916 BAGE3Q86Y29 109 aa6.23□□□□□ -1.41
CPSF1-203ENST00000527916 NKAPP1Q8N9T2 125 aa6.23□□□□□ -1.41
CPSF1-203ENST00000527916 C11orf86A6NJI1 115 aa6.22□□□□□ -1.41
CPSF1-203ENST00000527916 RPL37AP8A6NKH3 93 aa6.22□□□□□ -1.41
CPSF1-203ENST00000527916 PMCHL1Q16048 86 aa6.22□□□□□ -1.41
CPSF1-203ENST00000527916 CHCHD1Q96BP2 118 aaKnown RBP6.22□□□□□ -1.41
CPSF1-203ENST00000527916 ERG28Q9UKR5 140 aa6.22□□□□□ -1.41
CPSF1-203ENST00000527916 PFN2P35080 140 aa6.21□□□□□ -1.42
CPSF1-203ENST00000527916 TMEM170BQ5T4T1 132 aa6.21□□□□□ -1.42
CPSF1-203ENST00000527916 KRTAP13-1Q8IUC0 172 aa6.21□□□□□ -1.42
CPSF1-203ENST00000527916 SND1-IT1Q9HBX3 110 aa6.21□□□□□ -1.42
CPSF1-203ENST00000527916 CRCT1Q9UGL9 99 aa6.21□□□□□ -1.42
CPSF1-203ENST00000527916 TRAV12-1A0A0B4J245 112 aa6.2□□□□□ -1.42
CPSF1-203ENST00000527916 GAGE10A6NGK3 116 aa6.2□□□□□ -1.42
CPSF1-203ENST00000527916 VPREB1P12018 145 aa6.2□□□□□ -1.42
CPSF1-203ENST00000527916 RPL24P83731 157 aaKnown RBP6.2□□□□□ -1.42
CPSF1-203ENST00000527916 ZNF625Q96I27 306 aaPredicted RBP6.2□□□□□ -1.42
CPSF1-203ENST00000527916 CHTOPQ9Y3Y2 248 aaKnown RBP6.2□□□□□ -1.42
CPSF1-203ENST00000527916 CRYGAP11844 174 aa6.19□□□□□ -1.42
CPSF1-203ENST00000527916 LCE2DQ5TA82 110 aaPredicted RBP6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms