RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 HERVK_113P63121 156 aa10.94□□□□□ -0.66
TPM3-220ENST00000509601 C6orf226Q5I0X4 101 aa10.94□□□□□ -0.66
TPM3-220ENST00000509601 Q8IZM0 81 aa10.94□□□□□ -0.66
TPM3-220ENST00000509601 SCGB3A1Q96QR1 104 aa10.94□□□□□ -0.66
TPM3-220ENST00000509601 TOMM7Q9P0U1 55 aa10.94□□□□□ -0.66
TPM3-220ENST00000509601 IGLV7-43P04211 117 aa10.93□□□□□ -0.66
TPM3-220ENST00000509601 SEC11AP67812 179 aa10.93□□□□□ -0.66
TPM3-220ENST00000509601 PRSS2P07478 247 aa10.92□□□□□ -0.66
TPM3-220ENST00000509601 CKS1BP61024 79 aa10.91□□□□□ -0.66
TPM3-220ENST00000509601 COX19Q49B96 90 aa10.91□□□□□ -0.66
TPM3-220ENST00000509601 GEMIN7Q9H840 131 aaKnown RBP10.91□□□□□ -0.66
TPM3-220ENST00000509601 CARHSP1Q9Y2V2 147 aaKnown RBP10.91□□□□□ -0.66
TPM3-220ENST00000509601 FABP9Q0Z7S8 132 aa10.9□□□□□ -0.66
TPM3-220ENST00000509601 MRPL18Q9H0U6 180 aaKnown RBP10.9□□□□□ -0.66
TPM3-220ENST00000509601 M0QXV9 152 aa10.89□□□□□ -0.67
TPM3-220ENST00000509601 CST9LQ9H4G1 147 aa10.89□□□□□ -0.67
TPM3-220ENST00000509601 RPS10P5Q9NQ39 176 aa10.89□□□□□ -0.67
TPM3-220ENST00000509601 IGLV5-45A0A087WSX0 123 aa10.88□□□□□ -0.67
TPM3-220ENST00000509601 TINCRA0A1B0GVN0 87 aa10.88□□□□□ -0.67
TPM3-220ENST00000509601 LINC00469Q8N7U9 141 aa10.88□□□□□ -0.67
TPM3-220ENST00000509601 LINC01549A6NIU2 74 aa10.87□□□□□ -0.67
TPM3-220ENST00000509601 SMIM1B2RUZ4 78 aa10.87□□□□□ -0.67
TPM3-220ENST00000509601 RHEBQ15382 184 aa10.87□□□□□ -0.67
TPM3-220ENST00000509601 F8VRH5 84 aa10.86□□□□□ -0.67
TPM3-220ENST00000509601 FA2HQ7L5A8 372 aa10.86□□□□□ -0.67
TPM3-220ENST00000509601 DIRC1Q969H9 104 aa10.86□□□□□ -0.67
TPM3-220ENST00000509601 XAGE1AQ9HD64 81 aa10.86□□□□□ -0.67
TPM3-220ENST00000509601 UBE2BP63146 152 aa10.85□□□□□ -0.67
TPM3-220ENST00000509601 PMVKQ15126 192 aa10.85□□□□□ -0.67
TPM3-220ENST00000509601 PDZD11Q5EBL8 140 aa10.85□□□□□ -0.67
TPM3-220ENST00000509601 URB1-AS1Q96HZ7 61 aa10.85□□□□□ -0.67
TPM3-220ENST00000509601 C22orf24Q9Y442 160 aa10.85□□□□□ -0.67
TPM3-220ENST00000509601 H0Y9J4 135 aa10.84□□□□□ -0.67
TPM3-220ENST00000509601 RNF213Q63HN8 5207 aa10.83□□□□□ -0.68
TPM3-220ENST00000509601 A0A096LNJ9 63 aa10.83□□□□□ -0.68
TPM3-220ENST00000509601 CXCL5P42830 114 aa10.83□□□□□ -0.68
TPM3-220ENST00000509601 COX7B2Q8TF08 81 aa10.83□□□□□ -0.68
TPM3-220ENST00000509601 SMCO4Q9NRQ5 59 aa10.83□□□□□ -0.68
TPM3-220ENST00000509601 PRR26Q8N8Z3 221 aa10.82□□□□□ -0.68
TPM3-220ENST00000509601 LPAP08519 4548 aa10.81□□□□□ -0.68
TPM3-220ENST00000509601 KRTAP1-4P0C5Y4 121 aa10.81□□□□□ -0.68
TPM3-220ENST00000509601 SPINK8P0C7L1 97 aa10.81□□□□□ -0.68
TPM3-220ENST00000509601 C18orf32Q8TCD1 76 aa10.81□□□□□ -0.68
TPM3-220ENST00000509601 TRAPPC1Q9Y5R8 145 aa10.81□□□□□ -0.68
TPM3-220ENST00000509601 LINC00614P0C842 121 aa10.8□□□□□ -0.68
TPM3-220ENST00000509601 APOC3P02656 99 aa10.79□□□□□ -0.68
TPM3-220ENST00000509601 IGLC3P0DOY3 106 aa10.78□□□□□ -0.68
TPM3-220ENST00000509601 LBHQ53QV2 105 aaPredicted RBP10.78□□□□□ -0.68
TPM3-220ENST00000509601 TP73-AS1Q9UF72 201 aa10.78□□□□□ -0.68
TPM3-220ENST00000509601 ZNF861PO60384 105 aa10.77□□□□□ -0.69
TPM3-220ENST00000509601 RAB5BP61020 215 aa10.77□□□□□ -0.69
TPM3-220ENST00000509601 IGLV5-39A0A0G2JS06 123 aa10.75□□□□□ -0.69
TPM3-220ENST00000509601 H3BRM9 83 aa10.75□□□□□ -0.69
TPM3-220ENST00000509601 NUPR1O60356 82 aa10.75□□□□□ -0.69
TPM3-220ENST00000509601 NDUFA6P56556 154 aa10.75□□□□□ -0.69
TPM3-220ENST00000509601 PMCHL1Q16048 86 aa10.75□□□□□ -0.69
TPM3-220ENST00000509601 MRPL55Q7Z7F7 128 aaKnown RBP10.75□□□□□ -0.69
TPM3-220ENST00000509601 IGLV1-50A0A075B6I6 118 aa10.74□□□□□ -0.69
TPM3-220ENST00000509601 SNAPINO95295 136 aa10.74□□□□□ -0.69
TPM3-220ENST00000509601 HBDP02042 147 aa10.74□□□□□ -0.69
TPM3-220ENST00000509601 ZNF22P17026 224 aaPredicted RBP10.74□□□□□ -0.69
TPM3-220ENST00000509601 LINC00167Q96N53 147 aa10.74□□□□□ -0.69
TPM3-220ENST00000509601 YPEL4Q96NS1 127 aa10.73□□□□□ -0.69
TPM3-220ENST00000509601 SVBPQ8N300 66 aa10.72□□□□□ -0.69
TPM3-220ENST00000509601 IGLV5-37A0A075B6J1 123 aa10.71□□□□□ -0.69
TPM3-220ENST00000509601 RPL37AP8A6NKH3 93 aa10.71□□□□□ -0.69
TPM3-220ENST00000509601 ATP5LO75964 103 aa10.7□□□□□ -0.7
TPM3-220ENST00000509601 BAGE3Q86Y29 109 aa10.7□□□□□ -0.7
TPM3-220ENST00000509601 C11orf86A6NJI1 115 aa10.69□□□□□ -0.7
TPM3-220ENST00000509601 BCE1O60756 84 aa10.69□□□□□ -0.7
TPM3-220ENST00000509601 NDUFA5Q16718 116 aa10.69□□□□□ -0.7
TPM3-220ENST00000509601 GAGE10A6NGK3 116 aa10.68□□□□□ -0.7
TPM3-220ENST00000509601 PFN2P35080 140 aa10.68□□□□□ -0.7
TPM3-220ENST00000509601 SCO1O75880 301 aa10.66□□□□□ -0.7
TPM3-220ENST00000509601 RPL28P46779 137 aaKnown RBP10.65□□□□□ -0.7
TPM3-220ENST00000509601 SND1-IT1Q9HBX3 110 aa10.65□□□□□ -0.7
TPM3-220ENST00000509601 ERG28Q9UKR5 140 aa10.65□□□□□ -0.7
TPM3-220ENST00000509601 RPL13AP40429 203 aaKnown RBP10.64□□□□□ -0.71
TPM3-220ENST00000509601 TMEM170BQ5T4T1 132 aa10.64□□□□□ -0.71
TPM3-220ENST00000509601 KRTAP13-1Q8IUC0 172 aa10.64□□□□□ -0.71
TPM3-220ENST00000509601 NKAPP1Q8N9T2 125 aa10.64□□□□□ -0.71
TPM3-220ENST00000509601 ZNF625Q96I27 306 aaPredicted RBP10.64□□□□□ -0.71
TPM3-220ENST00000509601 CHTOPQ9Y3Y2 248 aaKnown RBP10.64□□□□□ -0.71
TPM3-220ENST00000509601 VPREB1P12018 145 aa10.63□□□□□ -0.71
TPM3-220ENST00000509601 COX17Q14061 63 aa10.63□□□□□ -0.71
TPM3-220ENST00000509601 CHCHD1Q96BP2 118 aaKnown RBP10.63□□□□□ -0.71
TPM3-220ENST00000509601 Q8NDZ9 215 aa10.62□□□□□ -0.71
TPM3-220ENST00000509601 A0A087X002 238 aa10.61□□□□□ -0.71
TPM3-220ENST00000509601 TRAV12-1A0A0B4J245 112 aa10.61□□□□□ -0.71
TPM3-220ENST00000509601 IGKV2-28A0A075B6P5 120 aa10.6□□□□□ -0.71
TPM3-220ENST00000509601 TMEM223A0PJW6 202 aa10.6□□□□□ -0.71
TPM3-220ENST00000509601 IGKV2D-28P01615 120 aa10.6□□□□□ -0.71
TPM3-220ENST00000509601 IFI27L1Q96BM0 104 aa10.6□□□□□ -0.71
TPM3-220ENST00000509601 CBLN2Q8IUK8 224 aa10.59□□□□□ -0.71
TPM3-220ENST00000509601 ANAPC11Q9NYG5 84 aa10.59□□□□□ -0.71
TPM3-220ENST00000509601 RPL24P83731 157 aaKnown RBP10.57□□□□□ -0.72
TPM3-220ENST00000509601 SFTA2Q6UW10 78 aa10.57□□□□□ -0.72
TPM3-220ENST00000509601 FAM19A2Q8N3H0 131 aa10.57□□□□□ -0.72
TPM3-220ENST00000509601 TMEM238C9JI98 176 aa10.56□□□□□ -0.72
TPM3-220ENST00000509601 UBE2AP49459 152 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms