RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FOXI1Q12951 378 aa5.8□□□□□ -1.48
USP54-215ENST00000497106 WFDC2Q14508 124 aa5.8□□□□□ -1.48
USP54-215ENST00000497106 ZNF625Q96I27 306 aaPredicted RBP5.8□□□□□ -1.48
USP54-215ENST00000497106 CDIP1Q9H305 208 aa5.8□□□□□ -1.48
USP54-215ENST00000497106 PRO1854Q9UHT4 67 aa5.79□□□□□ -1.48
USP54-215ENST00000497106 H7C2G1 150 aa5.79□□□□□ -1.48
USP54-215ENST00000497106 COX17Q14061 63 aa5.79□□□□□ -1.48
USP54-215ENST00000497106 A0A0U1RRA0 63 aa5.79□□□□□ -1.48
USP54-215ENST00000497106 C2orf91Q6ZV80 131 aa5.79□□□□□ -1.48
USP54-215ENST00000497106 IGLV5-39A0A0G2JS06 123 aa5.79□□□□□ -1.48
USP54-215ENST00000497106 PFN2P35080 140 aa5.79□□□□□ -1.48
USP54-215ENST00000497106 Q9UF83 564 aa5.79□□□□□ -1.48
USP54-215ENST00000497106 TTTY13Q9BZ97 58 aa5.78□□□□□ -1.48
USP54-215ENST00000497106 XGP55808 180 aa5.78□□□□□ -1.48
USP54-215ENST00000497106 S100A7L2Q5SY68 101 aa5.78□□□□□ -1.48
USP54-215ENST00000497106 MAPKAPK5-AS1Q8N8E1 139 aa5.78□□□□□ -1.48
USP54-215ENST00000497106 A0A0B4J2C4 111 aa5.78□□□□□ -1.48
USP54-215ENST00000497106 MUSTN1Q8IVN3 82 aa5.78□□□□□ -1.48
USP54-215ENST00000497106 TRBV20-1A0A075B6N2 111 aa5.77□□□□□ -1.49
USP54-215ENST00000497106 RELNP78509 3460 aa5.77□□□□□ -1.49
USP54-215ENST00000497106 Q6Q795 121 aa5.77□□□□□ -1.49
USP54-215ENST00000497106 H3BMG7 143 aa5.77□□□□□ -1.49
USP54-215ENST00000497106 ESRGQ1W209 222 aa5.77□□□□□ -1.49
USP54-215ENST00000497106 NSD1Q96L73 2696 aaPredicted RBP5.77□□□□□ -1.49
USP54-215ENST00000497106 COX6A2Q02221 97 aa5.76□□□□□ -1.49
USP54-215ENST00000497106 PPDPFLQ8WWR9 84 aa5.76□□□□□ -1.49
USP54-215ENST00000497106 NPC2P61916 151 aa5.76□□□□□ -1.49
USP54-215ENST00000497106 WFDC10BQ8IUB3 73 aa5.76□□□□□ -1.49
USP54-215ENST00000497106 HIVEP1P15822 2718 aa5.76□□□□□ -1.49
USP54-215ENST00000497106 IGHV3OR16-9A0A0B4J2B5 98 aa5.76□□□□□ -1.49
USP54-215ENST00000497106 DNAL4O96015 105 aa5.76□□□□□ -1.49
USP54-215ENST00000497106 DPH3Q96FX2 82 aa5.76□□□□□ -1.49
USP54-215ENST00000497106 TRBV30A0A0K0K1B3 111 aa5.75□□□□□ -1.49
USP54-215ENST00000497106 DNAH10OSP0CZ25 163 aa5.75□□□□□ -1.49
USP54-215ENST00000497106 FXYD2P54710 66 aa5.75□□□□□ -1.49
USP54-215ENST00000497106 ATXN8Q156A1 80 aa5.75□□□□□ -1.49
USP54-215ENST00000497106 C2orf48Q96LS8 159 aa5.75□□□□□ -1.49
USP54-215ENST00000497106 SND1-IT1Q9HBX3 110 aa5.75□□□□□ -1.49
USP54-215ENST00000497106 CFC1BP0CG36 223 aa5.75□□□□□ -1.49
USP54-215ENST00000497106 CFC1P0CG37 223 aa5.75□□□□□ -1.49
USP54-215ENST00000497106 C9JAW5 83 aa5.75□□□□□ -1.49
USP54-215ENST00000497106 MIR7-3HGQ8N6C7 128 aa5.75□□□□□ -1.49
USP54-215ENST00000497106 SPENQ96T58 3664 aaKnown RBP5.75□□□□□ -1.49
USP54-215ENST00000497106 SLC25A20O43772 301 aa5.74□□□□□ -1.49
USP54-215ENST00000497106 A0A1B0GX51 115 aa5.74□□□□□ -1.49
USP54-215ENST00000497106 NKAPP1Q8N9T2 125 aa5.74□□□□□ -1.49
USP54-215ENST00000497106 UPK3BQ9BT76 320 aa5.74□□□□□ -1.49
USP54-215ENST00000497106 NACAE9PAV3 2078 aa5.74□□□□□ -1.49
USP54-215ENST00000497106 CELSR2Q9HCU4 2923 aa5.74□□□□□ -1.49
USP54-215ENST00000497106 LINC00308Q8TCZ7 52 aa5.74□□□□□ -1.49
USP54-215ENST00000497106 DCHS2Q6V1P9 2916 aa5.74□□□□□ -1.49
USP54-215ENST00000497106 TSPEAR-AS2P59090 65 aa5.74□□□□□ -1.49
USP54-215ENST00000497106 FAM19A5Q7Z5A7 132 aaPredicted RBP5.74□□□□□ -1.49
USP54-215ENST00000497106 SEC61GP60059 68 aa5.73□□□□□ -1.49
USP54-215ENST00000497106 SYCNQ0VAF6 134 aa5.73□□□□□ -1.49
USP54-215ENST00000497106 CARD19Q96LW7 228 aa5.73□□□□□ -1.49
USP54-215ENST00000497106 PRR34Q9NV39 138 aa5.73□□□□□ -1.49
USP54-215ENST00000497106 ATRQ13535 2644 aa5.73□□□□□ -1.49
USP54-215ENST00000497106 SETXQ7Z333 2677 aaKnown RBP5.73□□□□□ -1.49
USP54-215ENST00000497106 RPS28P62857 69 aaKnown RBP5.72□□□□□ -1.49
USP54-215ENST00000497106 LINC00588Q9Y4M8 146 aa5.72□□□□□ -1.49
USP54-215ENST00000497106 H0YGX0 51 aa5.71□□□□□ -1.49
USP54-215ENST00000497106 HIGD2BQ4VC39 106 aa5.71□□□□□ -1.5
USP54-215ENST00000497106 K7ERJ3 54 aa5.71□□□□□ -1.5
USP54-215ENST00000497106 H3BQ85 93 aa5.7□□□□□ -1.5
USP54-215ENST00000497106 RPL18AQ02543 176 aaKnown RBP5.7□□□□□ -1.5
USP54-215ENST00000497106 PRO0461Q9UI25 63 aa5.7□□□□□ -1.5
USP54-215ENST00000497106 WWC2-AS2Q96NR7 200 aa5.7□□□□□ -1.5
USP54-215ENST00000497106 ENHOQ6UWT2 76 aa5.69□□□□□ -1.5
USP54-215ENST00000497106 DAND5Q8N907 189 aa5.69□□□□□ -1.5
USP54-215ENST00000497106 ANK3Q12955 4377 aaKnown RBP5.69□□□□□ -1.5
USP54-215ENST00000497106 TEN1Q86WV5 123 aa5.69□□□□□ -1.5
USP54-215ENST00000497106 ZANQ9Y493 2812 aa5.69□□□□□ -1.5
USP54-215ENST00000497106 LOC107984640A0A0U1RRK4 108 aa5.68□□□□□ -1.5
USP54-215ENST00000497106 NDUFC2O95298 119 aa5.68□□□□□ -1.5
USP54-215ENST00000497106 C9orf153Q5TBE3 101 aa5.68□□□□□ -1.5
USP54-215ENST00000497106 TACC2O95359 2948 aa5.68□□□□□ -1.5
USP54-215ENST00000497106 V9GYY9 64 aa5.68□□□□□ -1.5
USP54-215ENST00000497106 GVQW2A0A096LPI5 108 aaPredicted RBP5.68□□□□□ -1.5
USP54-215ENST00000497106 TEP1Q99973 2627 aaKnown RBP5.68□□□□□ -1.5
USP54-215ENST00000497106 APLNQ9ULZ1 77 aa5.68□□□□□ -1.5
USP54-215ENST00000497106 C2orf82Q6UX34 121 aa5.67□□□□□ -1.5
USP54-215ENST00000497106 CRYBG3Q68DQ2 2970 aa5.67□□□□□ -1.5
USP54-215ENST00000497106 USP17L23D6RBM5 183 aa5.67□□□□□ -1.5
USP54-215ENST00000497106 C3orf84H3BNL1 204 aa5.66□□□□□ -1.5
USP54-215ENST00000497106 NTN5Q8WTR8 489 aaPredicted RBP5.66□□□□□ -1.5
USP54-215ENST00000497106 LINC00474Q9P2X8 69 aa5.66□□□□□ -1.5
USP54-215ENST00000497106 ASH1LQ9NR48 2969 aaKnown RBP5.66□□□□□ -1.5
USP54-215ENST00000497106 SMG1Q96Q15 3661 aaKnown RBP5.66□□□□□ -1.5
USP54-215ENST00000497106 FAM104AQ969W3 186 aa5.66□□□□□ -1.5
USP54-215ENST00000497106 TRBV10-2A0A0K0K1G8 114 aa5.66□□□□□ -1.5
USP54-215ENST00000497106 UNQ6190/PRO20217Q6UXQ8 127 aa5.66□□□□□ -1.5
USP54-215ENST00000497106 NBDYA0A0U1RRE5 68 aa5.65□□□□□ -1.5
USP54-215ENST00000497106 MAP1AP78559 2803 aaPredicted RBP5.65□□□□□ -1.5
USP54-215ENST00000497106 NDUFC2-KCTD14E9PQ53 114 aa5.65□□□□□ -1.5
USP54-215ENST00000497106 C3orf22Q8N5N4 141 aa5.65□□□□□ -1.5
USP54-215ENST00000497106 PRO0628Q9UI54 55 aa5.65□□□□□ -1.5
USP54-215ENST00000497106 M0R378 163 aa5.65□□□□□ -1.51
USP54-215ENST00000497106 MAST4O15021 2626 aa5.64□□□□□ -1.51
USP54-215ENST00000497106 DIRC1Q969H9 104 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms