RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 KRTAP7-1Q8IUC3 87 aa11.24□□□□□ -0.61
COL9A3-214ENST00000490398 CST9LQ9H4G1 147 aa11.24□□□□□ -0.61
COL9A3-214ENST00000490398 GAGE2DQ9UEU5 116 aa11.24□□□□□ -0.61
COL9A3-214ENST00000490398 SLC7A5P1Q8MH63 180 aa11.23□□□□□ -0.61
COL9A3-214ENST00000490398 GEMIN7Q9H840 131 aaKnown RBP11.23□□□□□ -0.61
COL9A3-214ENST00000490398 KRTAP11-1Q8IUC1 163 aa11.22□□□□□ -0.61
COL9A3-214ENST00000490398 CBLN2Q8IUK8 224 aa11.22□□□□□ -0.61
COL9A3-214ENST00000490398 LINC00469Q8N7U9 141 aa11.22□□□□□ -0.61
COL9A3-214ENST00000490398 TRBV30A0A0K0K1B3 111 aa11.21□□□□□ -0.61
COL9A3-214ENST00000490398 TINCRA0A1B0GVN0 87 aa11.21□□□□□ -0.61
COL9A3-214ENST00000490398 LINC00614P0C842 121 aa11.21□□□□□ -0.61
COL9A3-214ENST00000490398 MT1HL1P0DM35 61 aa11.21□□□□□ -0.61
COL9A3-214ENST00000490398 Q8IZM0 81 aa11.21□□□□□ -0.61
COL9A3-214ENST00000490398 IGLV5-45A0A087WSX0 123 aa11.2□□□□□ -0.62
COL9A3-214ENST00000490398 SMIM1B2RUZ4 78 aa11.2□□□□□ -0.62
COL9A3-214ENST00000490398 SEC11AP67812 179 aa11.2□□□□□ -0.62
COL9A3-214ENST00000490398 PMVKQ15126 192 aa11.2□□□□□ -0.62
COL9A3-214ENST00000490398 C6orf226Q5I0X4 101 aa11.2□□□□□ -0.62
COL9A3-214ENST00000490398 C9orf129Q5T035 196 aaKnown RBP11.2□□□□□ -0.62
COL9A3-214ENST00000490398 PRSS2P07478 247 aa11.19□□□□□ -0.62
COL9A3-214ENST00000490398 FAM19A5Q7Z5A7 132 aaPredicted RBP11.19□□□□□ -0.62
COL9A3-214ENST00000490398 PACRGQ96M98 296 aaPredicted RBP11.19□□□□□ -0.62
COL9A3-214ENST00000490398 LINC01549A6NIU2 74 aa11.18□□□□□ -0.62
COL9A3-214ENST00000490398 NDUFC2-KCTD14E9PQ53 114 aa11.18□□□□□ -0.62
COL9A3-214ENST00000490398 SPINK8P0C7L1 97 aa11.18□□□□□ -0.62
COL9A3-214ENST00000490398 CKS1BP61024 79 aa11.18□□□□□ -0.62
COL9A3-214ENST00000490398 PDZD11Q5EBL8 140 aa11.18□□□□□ -0.62
COL9A3-214ENST00000490398 PSORS1C2Q9UIG4 136 aa11.18□□□□□ -0.62
COL9A3-214ENST00000490398 SRSF9Q13242 221 aaKnown RBP eCLIP11.17□□□□□ -0.62
COL9A3-214ENST00000490398 UBR4Q5T4S7 5183 aa11.17□□□□□ -0.62
COL9A3-214ENST00000490398 HBDP02042 147 aa11.16□□□□□ -0.62
COL9A3-214ENST00000490398 NDUFA6P56556 154 aa11.15□□□□□ -0.62
COL9A3-214ENST00000490398 IGLC3P0DOY3 106 aa11.14□□□□□ -0.63
COL9A3-214ENST00000490398 COX7B2Q8TF08 81 aa11.14□□□□□ -0.63
COL9A3-214ENST00000490398 F8VRH5 84 aa11.13□□□□□ -0.63
COL9A3-214ENST00000490398 SERTAD4-AS1Q5TG53 156 aa11.13□□□□□ -0.63
COL9A3-214ENST00000490398 XAGE1AQ9HD64 81 aa11.13□□□□□ -0.63
COL9A3-214ENST00000490398 RAB5BP61020 215 aa11.12□□□□□ -0.63
COL9A3-214ENST00000490398 ZNF22P17026 224 aaPredicted RBP11.11□□□□□ -0.63
COL9A3-214ENST00000490398 C1orf137Q5JT78 98 aa11.11□□□□□ -0.63
COL9A3-214ENST00000490398 SPINK6Q6UWN8 80 aa11.11□□□□□ -0.63
COL9A3-214ENST00000490398 M0QXV9 152 aa11.1□□□□□ -0.63
COL9A3-214ENST00000490398 ODF1Q14990 250 aa11.1□□□□□ -0.63
COL9A3-214ENST00000490398 IGLV5-39A0A0G2JS06 123 aa11.09□□□□□ -0.63
COL9A3-214ENST00000490398 C11orf86A6NJI1 115 aa11.09□□□□□ -0.63
COL9A3-214ENST00000490398 TRGC2P03986 189 aa11.09□□□□□ -0.63
COL9A3-214ENST00000490398 BAGE3Q86Y29 109 aa11.09□□□□□ -0.63
COL9A3-214ENST00000490398 CXCL5P42830 114 aa11.08□□□□□ -0.64
COL9A3-214ENST00000490398 LINC01600Q96MT4 127 aa11.08□□□□□ -0.64
COL9A3-214ENST00000490398 H3BRM9 83 aa11.07□□□□□ -0.64
COL9A3-214ENST00000490398 ATP5LO75964 103 aa11.07□□□□□ -0.64
COL9A3-214ENST00000490398 CHCHD1Q96BP2 118 aaKnown RBP11.07□□□□□ -0.64
COL9A3-214ENST00000490398 LINC00310P59036 64 aa11.06□□□□□ -0.64
COL9A3-214ENST00000490398 FAM19A2Q8N3H0 131 aa11.06□□□□□ -0.64
COL9A3-214ENST00000490398 C22orf24Q9Y442 160 aa11.06□□□□□ -0.64
COL9A3-214ENST00000490398 COLCA2A8K830 154 aa11.05□□□□□ -0.64
COL9A3-214ENST00000490398 IGLV7-43P04211 117 aa11.05□□□□□ -0.64
COL9A3-214ENST00000490398 UBE2BP63146 152 aa11.04□□□□□ -0.64
COL9A3-214ENST00000490398 CHTOPQ9Y3Y2 248 aaKnown RBP11.04□□□□□ -0.64
COL9A3-214ENST00000490398 KRTAP10-8P60410 259 aa11.03□□□□□ -0.64
COL9A3-214ENST00000490398 IFI27L1Q96BM0 104 aa11.03□□□□□ -0.64
COL9A3-214ENST00000490398 NUPR1O60356 82 aa11.02□□□□□ -0.65
COL9A3-214ENST00000490398 TMEM170BQ5T4T1 132 aa11.02□□□□□ -0.65
COL9A3-214ENST00000490398 REG3GQ6UW15 175 aa11.01□□□□□ -0.65
COL9A3-214ENST00000490398 TRAV12-1A0A0B4J245 112 aa11□□□□□ -0.65
COL9A3-214ENST00000490398 HSBP1O75506 76 aa11□□□□□ -0.65
COL9A3-214ENST00000490398 SCO1O75880 301 aa11□□□□□ -0.65
COL9A3-214ENST00000490398 SERF1AO75920 110 aa11□□□□□ -0.65
COL9A3-214ENST00000490398 PFN2P35080 140 aa11□□□□□ -0.65
COL9A3-214ENST00000490398 ZNF625Q96I27 306 aaPredicted RBP11□□□□□ -0.65
COL9A3-214ENST00000490398 LRP2P98164 4655 aa11□□□□□ -0.65
COL9A3-214ENST00000490398 TMEM223A0PJW6 202 aa10.97□□□□□ -0.65
COL9A3-214ENST00000490398 GAGE10A6NGK3 116 aa10.97□□□□□ -0.65
COL9A3-214ENST00000490398 MRPL55Q7Z7F7 128 aaKnown RBP10.97□□□□□ -0.65
COL9A3-214ENST00000490398 LINC00167Q96N53 147 aa10.97□□□□□ -0.65
COL9A3-214ENST00000490398 TP73-AS1Q9UF72 201 aa10.96□□□□□ -0.65
COL9A3-214ENST00000490398 ERG28Q9UKR5 140 aa10.96□□□□□ -0.65
COL9A3-214ENST00000490398 PLA2G2DQ9UNK4 145 aa10.96□□□□□ -0.65
COL9A3-214ENST00000490398 RPL37AP8A6NKH3 93 aa10.95□□□□□ -0.66
COL9A3-214ENST00000490398 H0Y8G0 127 aa10.95□□□□□ -0.66
COL9A3-214ENST00000490398 H0Y9J4 135 aa10.95□□□□□ -0.66
COL9A3-214ENST00000490398 LBHQ53QV2 105 aaPredicted RBP10.95□□□□□ -0.66
COL9A3-214ENST00000490398 Q8NDZ9 215 aa10.95□□□□□ -0.66
COL9A3-214ENST00000490398 DIRC1Q969H9 104 aa10.94□□□□□ -0.66
COL9A3-214ENST00000490398 SND1-IT1Q9HBX3 110 aa10.94□□□□□ -0.66
COL9A3-214ENST00000490398 IGLV5-37A0A075B6J1 123 aa10.93□□□□□ -0.66
COL9A3-214ENST00000490398 LEPROTL1O95214 131 aa10.92□□□□□ -0.66
COL9A3-214ENST00000490398 KRTAP1-4P0C5Y4 121 aa10.92□□□□□ -0.66
COL9A3-214ENST00000490398 FABP4P15090 132 aa10.92□□□□□ -0.66
COL9A3-214ENST00000490398 PRR26Q8N8Z3 221 aa10.92□□□□□ -0.66
COL9A3-214ENST00000490398 A0A0U1RRA0 63 aa10.9□□□□□ -0.66
COL9A3-214ENST00000490398 VPREB1P12018 145 aa10.9□□□□□ -0.66
COL9A3-214ENST00000490398 PMCHL2Q9BQD1 86 aa10.9□□□□□ -0.66
COL9A3-214ENST00000490398 LPAP08519 4548 aa10.9□□□□□ -0.66
COL9A3-214ENST00000490398 ZNF861PO60384 105 aa10.89□□□□□ -0.67
COL9A3-214ENST00000490398 TSPEAR-AS2P59090 65 aa10.88□□□□□ -0.67
COL9A3-214ENST00000490398 COX17Q14061 63 aa10.88□□□□□ -0.67
COL9A3-214ENST00000490398 NKAPP1Q8N9T2 125 aa10.88□□□□□ -0.67
COL9A3-214ENST00000490398 BCE1O60756 84 aa10.87□□□□□ -0.67
COL9A3-214ENST00000490398 IGKV2-28A0A075B6P5 120 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms