RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 CPAMD8Q8IZJ3 1885 aa12.56□□□□□ -0.4
NPHP4-209ENST00000489180 CCDC168Q8NDH2 2452 aa12.56□□□□□ -0.4
NPHP4-209ENST00000489180 MUC7Q8TAX7 377 aa12.56□□□□□ -0.4
NPHP4-209ENST00000489180 LINC00208Q96KT6 92 aa12.55□□□□□ -0.4
NPHP4-209ENST00000489180 A8MTW9 85 aa12.55□□□□□ -0.4
NPHP4-209ENST00000489180 LY6G6CO95867 125 aa12.55□□□□□ -0.4
NPHP4-209ENST00000489180 SMIM26A0A096LP01 95 aa12.55□□□□□ -0.4
NPHP4-209ENST00000489180 IGLV1-51P01701 117 aa12.55□□□□□ -0.4
NPHP4-209ENST00000489180 ESRGQ1W209 222 aa12.54□□□□□ -0.4
NPHP4-209ENST00000489180 C1orf195Q5TG92 126 aa12.53□□□□□ -0.4
NPHP4-209ENST00000489180 REG3GQ6UW15 175 aa12.53□□□□□ -0.4
NPHP4-209ENST00000489180 Q8N3U1 123 aa12.53□□□□□ -0.4
NPHP4-209ENST00000489180 ABCA2Q9BZC7 2435 aa12.53□□□□□ -0.4
NPHP4-209ENST00000489180 SERP1Q9Y6X1 66 aa12.52□□□□□ -0.4
NPHP4-209ENST00000489180 PRRC2AP48634 2157 aaKnown RBP12.52□□□□□ -0.4
NPHP4-209ENST00000489180 Q6ZTC4 211 aa12.51□□□□□ -0.41
NPHP4-209ENST00000489180 CSDC2Q9Y534 153 aaKnown RBP12.51□□□□□ -0.41
NPHP4-209ENST00000489180 DEFB116Q30KQ4 102 aa12.51□□□□□ -0.41
NPHP4-209ENST00000489180 LINC00575Q6W349 94 aa12.51□□□□□ -0.41
NPHP4-209ENST00000489180 EXPH5Q8NEV8 1989 aa12.5□□□□□ -0.41
NPHP4-209ENST00000489180 NCOR2Q9Y618 2525 aa12.5□□□□□ -0.41
NPHP4-209ENST00000489180 PRYO14603 147 aa12.5□□□□□ -0.41
NPHP4-209ENST00000489180 LINC01547P58512 204 aaPredicted RBP12.49□□□□□ -0.41
NPHP4-209ENST00000489180 BEAN1Q3B7T3 259 aa12.49□□□□□ -0.41
NPHP4-209ENST00000489180 IGF2RP11717 2491 aa12.49□□□□□ -0.41
NPHP4-209ENST00000489180 RETNLBQ9BQ08 111 aa12.48□□□□□ -0.41
NPHP4-209ENST00000489180 LINC00474Q9P2X8 69 aa12.48□□□□□ -0.41
NPHP4-209ENST00000489180 LINC00846Q9NV44 126 aa12.48□□□□□ -0.41
NPHP4-209ENST00000489180 IGHV6-1A0A0B4J1U7 121 aa12.48□□□□□ -0.41
NPHP4-209ENST00000489180 CIRBP-AS1Q8TBR5 109 aa12.47□□□□□ -0.41
NPHP4-209ENST00000489180 LINC00337Q8N6G1 96 aa12.46□□□□□ -0.41
NPHP4-209ENST00000489180 WDR87Q6ZQQ6 2873 aa12.46□□□□□ -0.42
NPHP4-209ENST00000489180 PCOTHQ58A44 107 aa12.45□□□□□ -0.42
NPHP4-209ENST00000489180 CDIP1Q9H305 208 aa12.45□□□□□ -0.42
NPHP4-209ENST00000489180 PSPHP1O15172 72 aa12.44□□□□□ -0.42
NPHP4-209ENST00000489180 Q6ZVQ6 151 aa12.44□□□□□ -0.42
NPHP4-209ENST00000489180 Q9BRP9 147 aa12.44□□□□□ -0.42
NPHP4-209ENST00000489180 KIF25-AS1Q9Y6Z4 181 aa12.43□□□□□ -0.42
NPHP4-209ENST00000489180 A0A087WSZ3 146 aa12.42□□□□□ -0.42
NPHP4-209ENST00000489180 TRBV7-7A0A0K0K1E9 115 aa12.41□□□□□ -0.42
NPHP4-209ENST00000489180 LYPD5Q6UWN5 251 aa12.41□□□□□ -0.42
NPHP4-209ENST00000489180 TRBV7-6A0A0J9YX20 115 aa12.4□□□□□ -0.42
NPHP4-209ENST00000489180 A0A1B0GUV1 79 aa12.4□□□□□ -0.42
NPHP4-209ENST00000489180 PMAIP1Q13794 54 aa12.39□□□□□ -0.43
NPHP4-209ENST00000489180 Q6ZRU5 148 aa12.39□□□□□ -0.43
NPHP4-209ENST00000489180 PIEZO1Q92508 2521 aa12.39□□□□□ -0.43
NPHP4-209ENST00000489180 COL5A1P20908 1838 aaPredicted RBP12.38□□□□□ -0.43
NPHP4-209ENST00000489180 AGRNO00468 2067 aa12.38□□□□□ -0.43
NPHP4-209ENST00000489180 LINC01556Q5JQF7 62 aa12.37□□□□□ -0.43
NPHP4-209ENST00000489180 TMEM254Q8TBM7 123 aa12.36□□□□□ -0.43
NPHP4-209ENST00000489180 C16orf95Q9H693 158 aa12.36□□□□□ -0.43
NPHP4-209ENST00000489180 LINC01546A6NGU7 62 aa12.36□□□□□ -0.43
NPHP4-209ENST00000489180 H0Y9P7 68 aa12.36□□□□□ -0.43
NPHP4-209ENST00000489180 MYO9AB2RTY4 2548 aa12.36□□□□□ -0.43
NPHP4-209ENST00000489180 Q8N2B8 174 aa12.36□□□□□ -0.43
NPHP4-209ENST00000489180 C11orf72Q8NBR9 251 aa12.35□□□□□ -0.43
NPHP4-209ENST00000489180 PRLHP81277 87 aa12.35□□□□□ -0.43
NPHP4-209ENST00000489180 SMCPP49901 116 aaPredicted RBP12.35□□□□□ -0.43
NPHP4-209ENST00000489180 IGLV5-52A0A0A0MRZ9 124 aa12.33□□□□□ -0.44
NPHP4-209ENST00000489180 C2orf48Q96LS8 159 aa12.33□□□□□ -0.44
NPHP4-209ENST00000489180 LINC00315P59091 139 aa12.33□□□□□ -0.44
NPHP4-209ENST00000489180 IGLV5-39A0A0G2JS06 123 aa12.32□□□□□ -0.44
NPHP4-209ENST00000489180 SPINK1P00995 79 aa12.32□□□□□ -0.44
NPHP4-209ENST00000489180 SBSPONQ8IVN8 264 aa12.32□□□□□ -0.44
NPHP4-209ENST00000489180 EP400Q96L91 3159 aa12.32□□□□□ -0.44
NPHP4-209ENST00000489180 HCG22E2RYF7 251 aa12.31□□□□□ -0.44
NPHP4-209ENST00000489180 TET2Q6N021 2002 aaPredicted RBP12.31□□□□□ -0.44
NPHP4-209ENST00000489180 ADAMTS20P59510 1910 aa12.31□□□□□ -0.44
NPHP4-209ENST00000489180 TLN1Q9Y490 2541 aaKnown RBP12.31□□□□□ -0.44
NPHP4-209ENST00000489180 NUPR2A6NF83 97 aa12.31□□□□□ -0.44
NPHP4-209ENST00000489180 Q9UF83 564 aa12.3□□□□□ -0.44
NPHP4-209ENST00000489180 X6R8D5 127 aa12.29□□□□□ -0.44
NPHP4-209ENST00000489180 CRYGAP11844 174 aa12.29□□□□□ -0.44
NPHP4-209ENST00000489180 LINC01561Q8N1V8 128 aa12.28□□□□□ -0.44
NPHP4-209ENST00000489180 FAM218AQ96MZ4 157 aa12.28□□□□□ -0.44
NPHP4-209ENST00000489180 KIAA0087Q14695 138 aa12.27□□□□□ -0.45
NPHP4-209ENST00000489180 FAM19A4Q96LR4 140 aa12.27□□□□□ -0.45
NPHP4-209ENST00000489180 C22orf24Q9Y442 160 aa12.27□□□□□ -0.45
NPHP4-209ENST00000489180 SMIM29Q86T20 159 aa12.27□□□□□ -0.45
NPHP4-209ENST00000489180 SPATA3Q8NHX4 192 aa12.26□□□□□ -0.45
NPHP4-209ENST00000489180 IGHV3OR16-9A0A0B4J2B5 98 aa12.26□□□□□ -0.45
NPHP4-209ENST00000489180 CXCL6P80162 114 aa12.25□□□□□ -0.45
NPHP4-209ENST00000489180 SMCR5Q8TEV8 140 aa12.25□□□□□ -0.45
NPHP4-209ENST00000489180 F8WDY8 70 aa12.24□□□□□ -0.45
NPHP4-209ENST00000489180 DOPEY1Q5JWR5 2465 aa12.24□□□□□ -0.45
NPHP4-209ENST00000489180 PRO0461Q9UI25 63 aa12.24□□□□□ -0.45
NPHP4-209ENST00000489180 C1orf64Q8NEQ6 169 aa12.21□□□□□ -0.46
NPHP4-209ENST00000489180 C6orf48Q9UBA6 75 aa12.19□□□□□ -0.46
NPHP4-209ENST00000489180 hDV103S1A0JD37 113 aa12.16□□□□□ -0.46
NPHP4-209ENST00000489180 IGLV5-45A0A087WSX0 123 aa12.15□□□□□ -0.46
NPHP4-209ENST00000489180 LINC00167Q96N53 147 aa12.15□□□□□ -0.46
NPHP4-209ENST00000489180 FHL3Q13643 280 aa12.15□□□□□ -0.46
NPHP4-209ENST00000489180 C1orf134Q5TEV5 83 aa12.15□□□□□ -0.46
NPHP4-209ENST00000489180 CENPFP49454 3210 aa12.14□□□□□ -0.47
NPHP4-209ENST00000489180 JMJD1CQ15652 2540 aa12.13□□□□□ -0.47
NPHP4-209ENST00000489180 C4orf26Q17RF5 130 aa12.12□□□□□ -0.47
NPHP4-209ENST00000489180 PTPRBP23467 1997 aa12.12□□□□□ -0.47
NPHP4-209ENST00000489180 IGKV2D-30A0A075B6S6 120 aa12.11□□□□□ -0.47
NPHP4-209ENST00000489180 IGKV2-30P06310 120 aa12.11□□□□□ -0.47
NPHP4-209ENST00000489180 ABCA12Q86UK0 2595 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms