RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ADAMTSL4-AS1Q5T5F5 129 aa9.55□□□□□ -0.88
CUX1-209ENST00000487284 UBE2WQ96B02 151 aa9.55□□□□□ -0.88
CUX1-209ENST00000487284 SFTA2Q6UW10 78 aa9.54□□□□□ -0.88
CUX1-209ENST00000487284 Q8IZM0 81 aa9.54□□□□□ -0.88
CUX1-209ENST00000487284 UPK3BQ9BT76 320 aa9.54□□□□□ -0.88
CUX1-209ENST00000487284 GAGE12HA6NDE8 117 aa9.54□□□□□ -0.88
CUX1-209ENST00000487284 K7ERJ3 54 aa9.54□□□□□ -0.88
CUX1-209ENST00000487284 CIRBPQ14011 172 aaKnown RBP9.54□□□□□ -0.88
CUX1-209ENST00000487284 MUSTN1Q8IVN3 82 aa9.53□□□□□ -0.88
CUX1-209ENST00000487284 C9orf118A6NHY6 69 aa9.52□□□□□ -0.89
CUX1-209ENST00000487284 RPL24P83731 157 aaKnown RBP9.52□□□□□ -0.89
CUX1-209ENST00000487284 KRTAP26-1Q6PEX3 210 aa9.52□□□□□ -0.89
CUX1-209ENST00000487284 RAB37Q96AX2 223 aa9.52□□□□□ -0.89
CUX1-209ENST00000487284 PRSS2P07478 247 aa9.51□□□□□ -0.89
CUX1-209ENST00000487284 IFITM1P13164 125 aa9.51□□□□□ -0.89
CUX1-209ENST00000487284 MALP21145 153 aa9.51□□□□□ -0.89
CUX1-209ENST00000487284 KIAA0087Q14695 138 aa9.51□□□□□ -0.89
CUX1-209ENST00000487284 MEIG1Q5JSS6 88 aa9.51□□□□□ -0.89
CUX1-209ENST00000487284 ALMS1Q8TCU4 4167 aa9.51□□□□□ -0.89
CUX1-209ENST00000487284 A4D1N5 150 aa9.5□□□□□ -0.89
CUX1-209ENST00000487284 C6orf226Q5I0X4 101 aa9.5□□□□□ -0.89
CUX1-209ENST00000487284 APOMO95445 188 aa9.5□□□□□ -0.89
CUX1-209ENST00000487284 CXCL5P42830 114 aa9.5□□□□□ -0.89
CUX1-209ENST00000487284 IBA57-AS1B1ANH7 110 aa9.49□□□□□ -0.89
CUX1-209ENST00000487284 CFC1BP0CG36 223 aa9.49□□□□□ -0.89
CUX1-209ENST00000487284 CFC1P0CG37 223 aa9.49□□□□□ -0.89
CUX1-209ENST00000487284 DAND5Q8N907 189 aa9.49□□□□□ -0.89
CUX1-209ENST00000487284 PPDPFQ9H3Y8 114 aa9.49□□□□□ -0.89
CUX1-209ENST00000487284 H3BUT2 72 aa9.48□□□□□ -0.89
CUX1-209ENST00000487284 LINC00308Q8TCZ7 52 aa9.48□□□□□ -0.89
CUX1-209ENST00000487284 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.47□□□□□ -0.89
CUX1-209ENST00000487284 A0A0B4J2C4 111 aa9.47□□□□□ -0.89
CUX1-209ENST00000487284 EIF4EBP3O60516 100 aaPredicted RBP9.47□□□□□ -0.89
CUX1-209ENST00000487284 CFAP161Q6P656 301 aa9.47□□□□□ -0.89
CUX1-209ENST00000487284 COPS9Q8WXC6 57 aa9.47□□□□□ -0.89
CUX1-209ENST00000487284 LINC00476Q8WZB0 136 aa9.47□□□□□ -0.89
CUX1-209ENST00000487284 A0A0U1RRA0 63 aa9.46□□□□□ -0.89
CUX1-209ENST00000487284 LY6G6CO95867 125 aa9.46□□□□□ -0.89
CUX1-209ENST00000487284 CKS1BP61024 79 aa9.46□□□□□ -0.89
CUX1-209ENST00000487284 C2orf82Q6UX34 121 aa9.46□□□□□ -0.89
CUX1-209ENST00000487284 NAA38Q9BRA0 125 aaKnown RBP9.46□□□□□ -0.89
CUX1-209ENST00000487284 C1orf43Q9BWL3 253 aa9.46□□□□□ -0.89
CUX1-209ENST00000487284 NPC2P61916 151 aa9.46□□□□□ -0.9
CUX1-209ENST00000487284 SPAG11BQ08648 103 aa9.46□□□□□ -0.9
CUX1-209ENST00000487284 SOSTDC1Q6X4U4 206 aa9.46□□□□□ -0.9
CUX1-209ENST00000487284 KRTAP1-5Q9BYS1 174 aa9.46□□□□□ -0.9
CUX1-209ENST00000487284 ERG28Q9UKR5 140 aa9.46□□□□□ -0.9
CUX1-209ENST00000487284 SACSQ9NZJ4 4579 aa9.46□□□□□ -0.9
CUX1-209ENST00000487284 A0A1W2PPM0 123 aa9.45□□□□□ -0.9
CUX1-209ENST00000487284 VAMP3Q15836 100 aa9.45□□□□□ -0.9
CUX1-209ENST00000487284 PRO1854Q9UHT4 67 aa9.45□□□□□ -0.9
CUX1-209ENST00000487284 MIR7-3HGQ8N6C7 128 aa9.44□□□□□ -0.9
CUX1-209ENST00000487284 PGPEP1Q9NXJ5 209 aa9.44□□□□□ -0.9
CUX1-209ENST00000487284 KMT2AQ03164 3969 aa9.44□□□□□ -0.9
CUX1-209ENST00000487284 IGKV2D-24A0A075B6R9 120 aa9.43□□□□□ -0.9
CUX1-209ENST00000487284 LINC00158P58513 81 aa9.43□□□□□ -0.9
CUX1-209ENST00000487284 DNAH10Q8IVF4 4471 aa9.42□□□□□ -0.9
CUX1-209ENST00000487284 NBDYA0A0U1RRE5 68 aa9.42□□□□□ -0.9
CUX1-209ENST00000487284 TSPAN13O95857 204 aa9.42□□□□□ -0.9
CUX1-209ENST00000487284 DNAH2Q9P225 4427 aa9.42□□□□□ -0.9
CUX1-209ENST00000487284 FABP2P12104 132 aa9.41□□□□□ -0.9
CUX1-209ENST00000487284 PFN2P35080 140 aa9.41□□□□□ -0.9
CUX1-209ENST00000487284 COX17Q14061 63 aa9.41□□□□□ -0.9
CUX1-209ENST00000487284 C6orf223Q8N319 242 aa9.41□□□□□ -0.9
CUX1-209ENST00000487284 C15orf56Q8N910 161 aa9.41□□□□□ -0.9
CUX1-209ENST00000487284 NTN5Q8WTR8 489 aaPredicted RBP9.41□□□□□ -0.9
CUX1-209ENST00000487284 Q9HAA7 133 aa9.41□□□□□ -0.9
CUX1-209ENST00000487284 UBE2V1Q13404 147 aa9.41□□□□□ -0.9
CUX1-209ENST00000487284 DNAH6Q9C0G6 4158 aa9.4□□□□□ -0.9
CUX1-209ENST00000487284 M0R2N4 97 aa9.4□□□□□ -0.9
CUX1-209ENST00000487284 TTC32Q5I0X7 151 aa9.4□□□□□ -0.9
CUX1-209ENST00000487284 UNQ6190/PRO20217Q6UXQ8 127 aa9.4□□□□□ -0.9
CUX1-209ENST00000487284 LINC00526Q96FQ7 95 aa9.4□□□□□ -0.9
CUX1-209ENST00000487284 GVQW2A0A096LPI5 108 aaPredicted RBP9.39□□□□□ -0.91
CUX1-209ENST00000487284 K7EP34 96 aa9.39□□□□□ -0.91
CUX1-209ENST00000487284 C10orf25Q5T742 122 aa9.39□□□□□ -0.91
CUX1-209ENST00000487284 RMI2Q96E14 147 aa9.39□□□□□ -0.91
CUX1-209ENST00000487284 SPCS1Q9Y6A9 102 aa9.38□□□□□ -0.91
CUX1-209ENST00000487284 LOC107984156A0A0G2JMH3 177 aa9.37□□□□□ -0.91
CUX1-209ENST00000487284 ZNF561-AS1K7EIQ3 104 aa9.37□□□□□ -0.91
CUX1-209ENST00000487284 HIGD2BQ4VC39 106 aa9.37□□□□□ -0.91
CUX1-209ENST00000487284 GTF2H5Q6ZYL4 71 aa9.37□□□□□ -0.91
CUX1-209ENST00000487284 ARL17AQ8IVW1 177 aa9.37□□□□□ -0.91
CUX1-209ENST00000487284 C2orf48Q96LS8 159 aa9.37□□□□□ -0.91
CUX1-209ENST00000487284 GAGE10A6NGK3 116 aa9.37□□□□□ -0.91
CUX1-209ENST00000487284 F8WDY8 70 aa9.37□□□□□ -0.91
CUX1-209ENST00000487284 C9orf116Q5BN46 136 aaPredicted RBP9.37□□□□□ -0.91
CUX1-209ENST00000487284 Q6ZR54 194 aa9.37□□□□□ -0.91
CUX1-209ENST00000487284 SND1-IT1Q9HBX3 110 aa9.37□□□□□ -0.91
CUX1-209ENST00000487284 HYDINQ4G0P3 5121 aa9.36□□□□□ -0.91
CUX1-209ENST00000487284 LCE6AA0A183 80 aa9.36□□□□□ -0.91
CUX1-209ENST00000487284 C6orf48Q9UBA6 75 aa9.36□□□□□ -0.91
CUX1-209ENST00000487284 KMT2CQ8NEZ4 4911 aaKnown RBP9.36□□□□□ -0.91
CUX1-209ENST00000487284 TRBV30A0A0K0K1B3 111 aa9.35□□□□□ -0.91
CUX1-209ENST00000487284 RPL13AP40429 203 aaKnown RBP9.35□□□□□ -0.91
CUX1-209ENST00000487284 LYRM7Q5U5X0 104 aa9.35□□□□□ -0.91
CUX1-209ENST00000487284 CAMK2N2Q96S95 79 aa9.35□□□□□ -0.91
CUX1-209ENST00000487284 H7C2G1 150 aa9.34□□□□□ -0.91
CUX1-209ENST00000487284 IGKV2-28A0A075B6P5 120 aa9.33□□□□□ -0.92
CUX1-209ENST00000487284 IGKV2D-28P01615 120 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms