RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 CLIP1P30622 1438 aa1.56□□□□□ -2.16
PTCD3-214ENST00000483925 NKTRP30414 1462 aaKnown RBP1.56□□□□□ -2.16
PTCD3-214ENST00000483925 ABCA1O95477 2261 aa1.55□□□□□ -2.16
PTCD3-214ENST00000483925 SPINK7P58062 85 aa1.55□□□□□ -2.16
PTCD3-214ENST00000483925 UGGT2Q9NYU1 1516 aa1.55□□□□□ -2.16
PTCD3-214ENST00000483925 TARBP1Q13395 1621 aaKnown RBP1.55□□□□□ -2.16
PTCD3-214ENST00000483925 ALKQ9UM73 1620 aa1.55□□□□□ -2.16
PTCD3-214ENST00000483925 LAMA4Q16363 1823 aa1.54□□□□□ -2.16
PTCD3-214ENST00000483925 A0A1B0GU69 56 aa1.54□□□□□ -2.16
PTCD3-214ENST00000483925 UMAD1C9J7I0 102 aa1.54□□□□□ -2.16
PTCD3-214ENST00000483925 SAMD9Q5K651 1589 aa1.54□□□□□ -2.16
PTCD3-214ENST00000483925 ERCC6L2Q5T890 1561 aa1.54□□□□□ -2.16
PTCD3-214ENST00000483925 LRP6O75581 1613 aa1.54□□□□□ -2.16
PTCD3-214ENST00000483925 C5P01031 1676 aa1.54□□□□□ -2.16
PTCD3-214ENST00000483925 XRN1Q8IZH2 1706 aaKnown RBP1.54□□□□□ -2.16
PTCD3-214ENST00000483925 MYH4Q9Y623 1939 aa1.54□□□□□ -2.16
PTCD3-214ENST00000483925 F5P12259 2224 aa1.54□□□□□ -2.16
PTCD3-214ENST00000483925 RP1L1Q8IWN7 2480 aaPredicted RBP1.54□□□□□ -2.16
PTCD3-214ENST00000483925 URB2Q14146 1524 aaKnown RBP1.53□□□□□ -2.16
PTCD3-214ENST00000483925 KMT2BQ9UMN6 2715 aaPredicted RBP1.53□□□□□ -2.16
PTCD3-214ENST00000483925 CRYBG1Q9Y4K1 1723 aa1.53□□□□□ -2.16
PTCD3-214ENST00000483925 SORL1Q92673 2214 aa1.52□□□□□ -2.17
PTCD3-214ENST00000483925 MYO7BQ6PIF6 2116 aa1.52□□□□□ -2.17
PTCD3-214ENST00000483925 KIF20BQ96Q89 1820 aa1.52□□□□□ -2.17
PTCD3-214ENST00000483925 SSBP3-AS1Q7Z2R9 100 aa1.52□□□□□ -2.17
PTCD3-214ENST00000483925 DUOX2Q9NRD8 1548 aa1.51□□□□□ -2.17
PTCD3-214ENST00000483925 TRBV7-4A0A0J9YYF1 115 aa1.51□□□□□ -2.17
PTCD3-214ENST00000483925 C10orf95Q9H7T3 257 aa1.51□□□□□ -2.17
PTCD3-214ENST00000483925 CRCT1Q9UGL9 99 aa1.51□□□□□ -2.17
PTCD3-214ENST00000483925 KDM3BQ7LBC6 1761 aa1.51□□□□□ -2.17
PTCD3-214ENST00000483925 A0A0G2JMZ2 1700 aa1.5□□□□□ -2.17
PTCD3-214ENST00000483925 A0A0D9SFI3 127 aa1.5□□□□□ -2.17
PTCD3-214ENST00000483925 NDUFB1O75438 58 aa1.5□□□□□ -2.17
PTCD3-214ENST00000483925 PPRC1Q5VV67 1664 aaKnown RBP1.5□□□□□ -2.17
PTCD3-214ENST00000483925 ADAMTS12P58397 1594 aa1.5□□□□□ -2.17
PTCD3-214ENST00000483925 NHSL1Q5SYE7 1610 aa1.49□□□□□ -2.17
PTCD3-214ENST00000483925 A0A087WXM4 84 aa1.49□□□□□ -2.17
PTCD3-214ENST00000483925 KRTAP10-4P60372 401 aaPredicted RBP1.49□□□□□ -2.17
PTCD3-214ENST00000483925 HEPN1Q6WQI6 88 aa1.49□□□□□ -2.17
PTCD3-214ENST00000483925 RGPD8O14715 1765 aaPredicted RBP1.49□□□□□ -2.17
PTCD3-214ENST00000483925 RGPD5Q99666 1765 aa1.49□□□□□ -2.17
PTCD3-214ENST00000483925 IFI27P40305 119 aaPredicted RBP1.48□□□□□ -2.17
PTCD3-214ENST00000483925 Q5BKY6 102 aa1.48□□□□□ -2.17
PTCD3-214ENST00000483925 IQGAP3Q86VI3 1631 aa1.48□□□□□ -2.17
PTCD3-214ENST00000483925 MYO5CQ9NQX4 1742 aa1.47□□□□□ -2.17
PTCD3-214ENST00000483925 DEFB112Q30KQ8 113 aa1.47□□□□□ -2.17
PTCD3-214ENST00000483925 CNFNQ9BYD5 112 aa1.47□□□□□ -2.17
PTCD3-214ENST00000483925 SETBP1Q9Y6X0 1596 aa1.47□□□□□ -2.17
PTCD3-214ENST00000483925 OTOGLQ3ZCN5 2332 aa1.46□□□□□ -2.18
PTCD3-214ENST00000483925 TULP4Q9NRJ4 1543 aa1.46□□□□□ -2.18
PTCD3-214ENST00000483925 A0A0D9SG42 100 aa1.46□□□□□ -2.18
PTCD3-214ENST00000483925 LINC00959A0A1B0GUT2 108 aa1.46□□□□□ -2.18
PTCD3-214ENST00000483925 PIK3C2BO00750 1634 aa1.46□□□□□ -2.18
PTCD3-214ENST00000483925 PAPPA2Q9BXP8 1791 aa1.46□□□□□ -2.18
PTCD3-214ENST00000483925 ZDBF2Q9HCK1 2354 aa1.45□□□□□ -2.18
PTCD3-214ENST00000483925 ZC3H13Q5T200 1668 aaKnown RBP1.45□□□□□ -2.18
PTCD3-214ENST00000483925 KIAA0556O60303 1618 aa1.45□□□□□ -2.18
PTCD3-214ENST00000483925 TP53AIP1Q9HCN2 124 aa1.45□□□□□ -2.18
PTCD3-214ENST00000483925 CEP170BQ9Y4F5 1589 aaPredicted RBP1.45□□□□□ -2.18
PTCD3-214ENST00000483925 LRRC7Q96NW7 1537 aa1.45□□□□□ -2.18
PTCD3-214ENST00000483925 RGPD2P0DJD1 1756 aa1.44□□□□□ -2.18
PTCD3-214ENST00000483925 SCN11AQ9UI33 1791 aa1.44□□□□□ -2.18
PTCD3-214ENST00000483925 COX6A2Q02221 97 aa1.44□□□□□ -2.18
PTCD3-214ENST00000483925 PIGYQ3MUY2 71 aa1.44□□□□□ -2.18
PTCD3-214ENST00000483925 GAFA1Q96PS6 74 aa1.44□□□□□ -2.18
PTCD3-214ENST00000483925 KNTC1P50748 2209 aa1.44□□□□□ -2.18
PTCD3-214ENST00000483925 LTN1O94822 1766 aa1.44□□□□□ -2.18
PTCD3-214ENST00000483925 PKD1L3Q7Z443 1732 aa1.43□□□□□ -2.18
PTCD3-214ENST00000483925 TRAV21A0A0B4J279 112 aa1.43□□□□□ -2.18
PTCD3-214ENST00000483925 WFDC9Q8NEX5 89 aa1.43□□□□□ -2.18
PTCD3-214ENST00000483925 KRTAP4-1Q9BYQ7 146 aa1.43□□□□□ -2.18
PTCD3-214ENST00000483925 MAGI3Q5TCQ9 1506 aa1.43□□□□□ -2.18
PTCD3-214ENST00000483925 DNAJC13O75165 2243 aa1.42□□□□□ -2.18
PTCD3-214ENST00000483925 MYO7AQ13402 2215 aa1.42□□□□□ -2.18
PTCD3-214ENST00000483925 EFCAB5A4FU69 1503 aa1.41□□□□□ -2.18
PTCD3-214ENST00000483925 LAMC1P11047 1609 aa1.41□□□□□ -2.18
PTCD3-214ENST00000483925 MROH1Q8NDA8 1641 aa1.41□□□□□ -2.18
PTCD3-214ENST00000483925 LRRC37AA6NMS7 1700 aa1.41□□□□□ -2.18
PTCD3-214ENST00000483925 SLIT1O75093 1534 aa1.4□□□□□ -2.18
PTCD3-214ENST00000483925 ROS1P08922 2347 aa1.4□□□□□ -2.18
PTCD3-214ENST00000483925 COL6A6A6NMZ7 2263 aa1.4□□□□□ -2.19
PTCD3-214ENST00000483925 CD163L1Q9NR16 1453 aa1.4□□□□□ -2.19
PTCD3-214ENST00000483925 I3L2K1 104 aa1.4□□□□□ -2.19
PTCD3-214ENST00000483925 COX7BP24311 80 aa1.4□□□□□ -2.19
PTCD3-214ENST00000483925 RPL38P63173 70 aaKnown RBP1.4□□□□□ -2.19
PTCD3-214ENST00000483925 FAM103A1Q9BTL3 118 aaKnown RBP1.4□□□□□ -2.19
PTCD3-214ENST00000483925 PLXNB2O15031 1838 aa1.4□□□□□ -2.19
PTCD3-214ENST00000483925 HFM1A2PYH4 1435 aa1.4□□□□□ -2.19
PTCD3-214ENST00000483925 ANKRD50Q9ULJ7 1429 aa1.4□□□□□ -2.19
PTCD3-214ENST00000483925 INO80Q9ULG1 1556 aaPredicted RBP1.39□□□□□ -2.19
PTCD3-214ENST00000483925 IFI6P09912 130 aa1.39□□□□□ -2.19
PTCD3-214ENST00000483925 USMG5Q96IX5 58 aa1.39□□□□□ -2.19
PTCD3-214ENST00000483925 PRO0255Q9UI72 69 aa1.39□□□□□ -2.19
PTCD3-214ENST00000483925 USP32Q8NFA0 1604 aa1.39□□□□□ -2.19
PTCD3-214ENST00000483925 JMJD1CQ15652 2540 aa1.39□□□□□ -2.19
PTCD3-214ENST00000483925 A0A087WWC5 75 aa1.38□□□□□ -2.19
PTCD3-214ENST00000483925 HMGA1P17096 107 aaKnown RBP1.38□□□□□ -2.19
PTCD3-214ENST00000483925 S100ZQ8WXG8 99 aa1.38□□□□□ -2.19
PTCD3-214ENST00000483925 CACNA1CQ13936 2221 aa1.38□□□□□ -2.19
PTCD3-214ENST00000483925 PAPPAQ13219 1627 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms