RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 KRTAP5-2Q701N4 177 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 Q86TA4 180 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 DEFB107AQ8IZN7 70 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 LINC00304Q8N9R0 145 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 WFDC10AQ9H1F0 79 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 LINC01558Q9Y6Z2 57 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 ALPK2Q86TB3 2170 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 ATP7BP35670 1465 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 C5P01031 1676 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 CPS1P31327 1500 aa2.23□□□□□ -2.05
VPS41-212ENST00000482217 COL4A2P08572 1712 aa2.23□□□□□ -2.05
VPS41-212ENST00000482217 DOT1LQ8TEK3 1739 aa2.23□□□□□ -2.05
VPS41-212ENST00000482217 TRAV40A0A0B4J280 105 aa2.23□□□□□ -2.05
VPS41-212ENST00000482217 LINC01549A6NIU2 74 aa2.23□□□□□ -2.05
VPS41-212ENST00000482217 IL9P15248 144 aa2.23□□□□□ -2.05
VPS41-212ENST00000482217 AMELXQ99217 191 aa2.23□□□□□ -2.05
VPS41-212ENST00000482217 TULP4Q9NRJ4 1543 aa2.22□□□□□ -2.05
VPS41-212ENST00000482217 RTTNQ86VV8 2226 aa2.22□□□□□ -2.05
VPS41-212ENST00000482217 IGKV2-29A2NJV5 120 aaPredicted RBP2.22□□□□□ -2.05
VPS41-212ENST00000482217 DNAL4O96015 105 aa2.22□□□□□ -2.05
VPS41-212ENST00000482217 SPINK7P58062 85 aa2.22□□□□□ -2.05
VPS41-212ENST00000482217 FN1P02751 2386 aaKnown RBP2.22□□□□□ -2.05
VPS41-212ENST00000482217 ZNF137PP52743 207 aa2.21□□□□□ -2.06
VPS41-212ENST00000482217 RPL37AP61513 92 aaKnown RBP2.21□□□□□ -2.06
VPS41-212ENST00000482217 FXYD3Q14802 87 aa2.21□□□□□ -2.06
VPS41-212ENST00000482217 LCE3AQ5TA76 89 aa2.21□□□□□ -2.06
VPS41-212ENST00000482217 C4orf3Q8WVX3 66 aa2.21□□□□□ -2.06
VPS41-212ENST00000482217 R4GMQ9 66 aa2.21□□□□□ -2.06
VPS41-212ENST00000482217 NWD1Q149M9 1564 aa2.2□□□□□ -2.06
VPS41-212ENST00000482217 TRGV4A0A0C4DH28 118 aa2.2□□□□□ -2.06
VPS41-212ENST00000482217 A0A1W2PNN7 141 aa2.2□□□□□ -2.06
VPS41-212ENST00000482217 J3QRE1 110 aa2.2□□□□□ -2.06
VPS41-212ENST00000482217 K7EMI3 77 aa2.2□□□□□ -2.06
VPS41-212ENST00000482217 KRTAP10-8P60410 259 aa2.2□□□□□ -2.06
VPS41-212ENST00000482217 C10orf55Q5SWW7 151 aa2.2□□□□□ -2.06
VPS41-212ENST00000482217 HCP5Q6MZN7 132 aa2.2□□□□□ -2.06
VPS41-212ENST00000482217 DEFB132Q7Z7B7 95 aa2.2□□□□□ -2.06
VPS41-212ENST00000482217 C5orf56Q8N8D9 126 aa2.2□□□□□ -2.06
VPS41-212ENST00000482217 CTXND1A0A1B0GTU2 59 aa2.19□□□□□ -2.06
VPS41-212ENST00000482217 SPRR4Q96PI1 79 aa2.19□□□□□ -2.06
VPS41-212ENST00000482217 WFDC6Q9BQY6 131 aa2.19□□□□□ -2.06
VPS41-212ENST00000482217 V9GYV3 84 aa2.19□□□□□ -2.06
VPS41-212ENST00000482217 LY75O60449 1722 aa2.19□□□□□ -2.06
VPS41-212ENST00000482217 IGKV2-40A0A087WW87 121 aaPredicted RBP2.18□□□□□ -2.06
VPS41-212ENST00000482217 UQCR11O14957 56 aa2.18□□□□□ -2.06
VPS41-212ENST00000482217 IGKV2D-40P01614 121 aaPredicted RBP2.18□□□□□ -2.06
VPS41-212ENST00000482217 LINC00315P59091 139 aa2.18□□□□□ -2.06
VPS41-212ENST00000482217 LINC00208Q96KT6 92 aa2.18□□□□□ -2.06
VPS41-212ENST00000482217 Q96NJ1 140 aa2.18□□□□□ -2.06
VPS41-212ENST00000482217 NOTCH2Q04721 2471 aa2.18□□□□□ -2.06
VPS41-212ENST00000482217 CACNA1CQ13936 2221 aa2.18□□□□□ -2.06
VPS41-212ENST00000482217 ABCA1O95477 2261 aa2.17□□□□□ -2.06
VPS41-212ENST00000482217 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.17□□□□□ -2.06
VPS41-212ENST00000482217 TRAV21A0A0B4J279 112 aa2.17□□□□□ -2.06
VPS41-212ENST00000482217 A0A1B0GUT8 65 aa2.17□□□□□ -2.06
VPS41-212ENST00000482217 TOMM5Q8N4H5 51 aa2.17□□□□□ -2.06
VPS41-212ENST00000482217 FXYD4P59646 89 aa2.16□□□□□ -2.06
VPS41-212ENST00000482217 NREPQ16612 68 aa2.16□□□□□ -2.06
VPS41-212ENST00000482217 LINC00472Q9H8W2 130 aa2.16□□□□□ -2.06
VPS41-212ENST00000482217 DDX60LQ5H9U9 1706 aaKnown RBP2.16□□□□□ -2.06
VPS41-212ENST00000482217 IGKV2D-24A0A075B6R9 120 aa2.15□□□□□ -2.07
VPS41-212ENST00000482217 TRGV1A0A0A0MS02 117 aa2.15□□□□□ -2.07
VPS41-212ENST00000482217 H0Y9P7 68 aa2.15□□□□□ -2.07
VPS41-212ENST00000482217 PRB2P02812 416 aaPredicted RBP2.15□□□□□ -2.07
VPS41-212ENST00000482217 IGKV4-1P06312 121 aa2.15□□□□□ -2.07
VPS41-212ENST00000482217 MGPP08493 103 aa2.15□□□□□ -2.07
VPS41-212ENST00000482217 KRTAP13-2Q52LG2 175 aa2.15□□□□□ -2.07
VPS41-212ENST00000482217 SPATA8Q6RVD6 105 aa2.15□□□□□ -2.07
VPS41-212ENST00000482217 LINC00322Q6ZN03 302 aaPredicted RBP2.15□□□□□ -2.07
VPS41-212ENST00000482217 LINC00846Q9NV44 126 aa2.15□□□□□ -2.07
VPS41-212ENST00000482217 F5P12259 2224 aa2.14□□□□□ -2.07
VPS41-212ENST00000482217 TRGV2A0A075B6R0 118 aa2.14□□□□□ -2.07
VPS41-212ENST00000482217 TRAV1-2A0A0B4J238 106 aa2.14□□□□□ -2.07
VPS41-212ENST00000482217 TRBV30A0A0K0K1B3 111 aa2.14□□□□□ -2.07
VPS41-212ENST00000482217 H3BRN7 92 aa2.14□□□□□ -2.07
VPS41-212ENST00000482217 IGLV6-57P01721 117 aa2.14□□□□□ -2.07
VPS41-212ENST00000482217 PRH1P02810 166 aa2.14□□□□□ -2.07
VPS41-212ENST00000482217 FCER1GP30273 86 aa2.14□□□□□ -2.07
VPS41-212ENST00000482217 C10orf113Q5VZT2 155 aa2.14□□□□□ -2.07
VPS41-212ENST00000482217 TMEM263Q8WUH6 116 aaKnown RBP2.14□□□□□ -2.07
VPS41-212ENST00000482217 FAM208AQ9UK61 1670 aaKnown RBP2.14□□□□□ -2.07
VPS41-212ENST00000482217 NFAT5O94916 1531 aa2.13□□□□□ -2.07
VPS41-212ENST00000482217 CADP27708 2225 aa2.13□□□□□ -2.07
VPS41-212ENST00000482217 ZNF625Q96I27 306 aaPredicted RBP2.13□□□□□ -2.07
VPS41-212ENST00000482217 CMC2Q9NRP2 79 aa2.13□□□□□ -2.07
VPS41-212ENST00000482217 TMEM14CQ9P0S9 112 aa2.13□□□□□ -2.07
VPS41-212ENST00000482217 ENHOQ6UWT2 76 aa2.12□□□□□ -2.07
VPS41-212ENST00000482217 ZCCHC13Q8WW36 166 aaKnown RBP2.12□□□□□ -2.07
VPS41-212ENST00000482217 IGLV4-60A0A075B6I1 120 aa2.11□□□□□ -2.07
VPS41-212ENST00000482217 LOC110117498A0A087WWA1 95 aa2.11□□□□□ -2.07
VPS41-212ENST00000482217 LCE6AA0A183 80 aa2.11□□□□□ -2.07
VPS41-212ENST00000482217 LINC00959A0A1B0GUT2 108 aa2.11□□□□□ -2.07
VPS41-212ENST00000482217 Q6ZRN7 208 aaPredicted RBP2.11□□□□□ -2.07
VPS41-212ENST00000482217 WFDC9Q8NEX5 89 aa2.11□□□□□ -2.07
VPS41-212ENST00000482217 NMES1Q9C002 83 aa2.11□□□□□ -2.07
VPS41-212ENST00000482217 LMO7Q8WWI1 1683 aa2.11□□□□□ -2.07
VPS41-212ENST00000482217 IGKV2-28A0A075B6P5 120 aa2.1□□□□□ -2.07
VPS41-212ENST00000482217 INE1O15225 51 aa2.1□□□□□ -2.07
VPS41-212ENST00000482217 IGKV2D-28P01615 120 aa2.1□□□□□ -2.07
VPS41-212ENST00000482217 SMIM4Q8WVI0 70 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms