RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 RAB14P61106 215 aa10.49□□□□□ -0.73
COL7A1-208ENST00000470076 TIMM17AQ99595 171 aa10.49□□□□□ -0.73
COL7A1-208ENST00000470076 GEMIN7Q9H840 131 aaKnown RBP10.49□□□□□ -0.73
COL7A1-208ENST00000470076 CDKN2A-AS1Q9UH64 79 aa10.49□□□□□ -0.73
COL7A1-208ENST00000470076 F8VRH5 84 aa10.48□□□□□ -0.73
COL7A1-208ENST00000470076 NUPR1O60356 82 aa10.48□□□□□ -0.73
COL7A1-208ENST00000470076 ZNF861PO60384 105 aa10.48□□□□□ -0.73
COL7A1-208ENST00000470076 LBHQ53QV2 105 aaPredicted RBP10.48□□□□□ -0.73
COL7A1-208ENST00000470076 LINC00469Q8N7U9 141 aa10.48□□□□□ -0.73
COL7A1-208ENST00000470076 XAGE1AQ9HD64 81 aa10.48□□□□□ -0.73
COL7A1-208ENST00000470076 C22orf24Q9Y442 160 aa10.48□□□□□ -0.73
COL7A1-208ENST00000470076 TOMM6Q96B49 74 aa10.47□□□□□ -0.73
COL7A1-208ENST00000470076 CARHSP1Q9Y2V2 147 aaKnown RBP10.47□□□□□ -0.73
COL7A1-208ENST00000470076 CXCL5P42830 114 aa10.46□□□□□ -0.73
COL7A1-208ENST00000470076 ERASQ7Z444 233 aa10.45□□□□□ -0.74
COL7A1-208ENST00000470076 TP73-AS1Q9UF72 201 aa10.45□□□□□ -0.74
COL7A1-208ENST00000470076 MRPL55Q7Z7F7 128 aaKnown RBP10.43□□□□□ -0.74
COL7A1-208ENST00000470076 KIAA1644Q3SXP7 199 aa10.42□□□□□ -0.74
COL7A1-208ENST00000470076 SCGB3A1Q96QR1 104 aa10.42□□□□□ -0.74
COL7A1-208ENST00000470076 TRAV9-1A0A075B6T8 112 aa10.41□□□□□ -0.74
COL7A1-208ENST00000470076 LINC01549A6NIU2 74 aa10.41□□□□□ -0.74
COL7A1-208ENST00000470076 SMIM1B2RUZ4 78 aa10.41□□□□□ -0.74
COL7A1-208ENST00000470076 PDZD11Q5EBL8 140 aa10.41□□□□□ -0.74
COL7A1-208ENST00000470076 TINCRA0A1B0GVN0 87 aa10.4□□□□□ -0.74
COL7A1-208ENST00000470076 RPL28P46779 137 aaKnown RBP10.4□□□□□ -0.74
COL7A1-208ENST00000470076 PRR4Q16378 134 aa10.4□□□□□ -0.74
COL7A1-208ENST00000470076 IGLV5-45A0A087WSX0 123 aa10.39□□□□□ -0.75
COL7A1-208ENST00000470076 BCE1O60756 84 aa10.39□□□□□ -0.75
COL7A1-208ENST00000470076 CLLU1Q5K131 121 aa10.39□□□□□ -0.75
COL7A1-208ENST00000470076 COX7B2Q8TF08 81 aa10.39□□□□□ -0.75
COL7A1-208ENST00000470076 ADCYAP1P18509 176 aa10.38□□□□□ -0.75
COL7A1-208ENST00000470076 LINC01546A6NGU7 62 aa10.37□□□□□ -0.75
COL7A1-208ENST00000470076 LINC00167Q96N53 147 aa10.37□□□□□ -0.75
COL7A1-208ENST00000470076 GNB1LQ9BYB4 327 aa10.36□□□□□ -0.75
COL7A1-208ENST00000470076 CST9LQ9H4G1 147 aa10.36□□□□□ -0.75
COL7A1-208ENST00000470076 UQCC3Q6UW78 93 aa10.35□□□□□ -0.75
COL7A1-208ENST00000470076 IGLV5-37A0A075B6J1 123 aa10.34□□□□□ -0.75
COL7A1-208ENST00000470076 TMEM218A2RU14 115 aa10.34□□□□□ -0.75
COL7A1-208ENST00000470076 RPL37AP8A6NKH3 93 aa10.34□□□□□ -0.75
COL7A1-208ENST00000470076 SPINK8P0C7L1 97 aa10.34□□□□□ -0.75
COL7A1-208ENST00000470076 S100PP25815 95 aa10.34□□□□□ -0.75
COL7A1-208ENST00000470076 PMVKQ15126 192 aa10.34□□□□□ -0.75
COL7A1-208ENST00000470076 MRPL18Q9H0U6 180 aaKnown RBP10.34□□□□□ -0.75
COL7A1-208ENST00000470076 A0A087X002 238 aa10.33□□□□□ -0.76
COL7A1-208ENST00000470076 CRYGAP11844 174 aa10.33□□□□□ -0.76
COL7A1-208ENST00000470076 RAB5BP61020 215 aa10.33□□□□□ -0.76
COL7A1-208ENST00000470076 GAGE10A6NGK3 116 aa10.32□□□□□ -0.76
COL7A1-208ENST00000470076 H3BRM9 83 aa10.32□□□□□ -0.76
COL7A1-208ENST00000470076 COX19Q49B96 90 aa10.32□□□□□ -0.76
COL7A1-208ENST00000470076 NKAPP1Q8N9T2 125 aa10.32□□□□□ -0.76
COL7A1-208ENST00000470076 ATP5LO75964 103 aa10.31□□□□□ -0.76
COL7A1-208ENST00000470076 TSPAN13O95857 204 aa10.31□□□□□ -0.76
COL7A1-208ENST00000470076 FA2HQ7L5A8 372 aa10.31□□□□□ -0.76
COL7A1-208ENST00000470076 TYMSOSQ8TAI1 123 aa10.31□□□□□ -0.76
COL7A1-208ENST00000470076 SMCO4Q9NRQ5 59 aa10.31□□□□□ -0.76
COL7A1-208ENST00000470076 SEC11CQ9BY50 192 aa10.3□□□□□ -0.76
COL7A1-208ENST00000470076 UBE2AP49459 152 aa10.29□□□□□ -0.76
COL7A1-208ENST00000470076 KRTAP13-1Q8IUC0 172 aa10.29□□□□□ -0.76
COL7A1-208ENST00000470076 MUC2Q02817 5179 aa10.28□□□□□ -0.76
COL7A1-208ENST00000470076 FABP9Q0Z7S8 132 aa10.27□□□□□ -0.77
COL7A1-208ENST00000470076 IGLV5-39A0A0G2JS06 123 aa10.26□□□□□ -0.77
COL7A1-208ENST00000470076 IGLC3P0DOY3 106 aa10.26□□□□□ -0.77
COL7A1-208ENST00000470076 IGKV2-28A0A075B6P5 120 aa10.25□□□□□ -0.77
COL7A1-208ENST00000470076 IGKV2D-28P01615 120 aa10.25□□□□□ -0.77
COL7A1-208ENST00000470076 PFN2P35080 140 aa10.25□□□□□ -0.77
COL7A1-208ENST00000470076 FAM229BQ4G0N7 80 aa10.25□□□□□ -0.77
COL7A1-208ENST00000470076 ANAPC11Q9NYG5 84 aa10.25□□□□□ -0.77
COL7A1-208ENST00000470076 IFITM2Q01629 132 aa10.24□□□□□ -0.77
COL7A1-208ENST00000470076 SCO1O75880 301 aa10.23□□□□□ -0.77
COL7A1-208ENST00000470076 NDUFA6P56556 154 aa10.23□□□□□ -0.77
COL7A1-208ENST00000470076 COX17Q14061 63 aa10.23□□□□□ -0.77
COL7A1-208ENST00000470076 KRTAP13-2Q52LG2 175 aa10.23□□□□□ -0.77
COL7A1-208ENST00000470076 ERG28Q9UKR5 140 aa10.23□□□□□ -0.77
COL7A1-208ENST00000470076 A0A096LNJ9 63 aa10.22□□□□□ -0.77
COL7A1-208ENST00000470076 VPREB1P12018 145 aa10.22□□□□□ -0.77
COL7A1-208ENST00000470076 ZNF22P17026 224 aaPredicted RBP10.22□□□□□ -0.77
COL7A1-208ENST00000470076 SND1-IT1Q9HBX3 110 aa10.22□□□□□ -0.77
COL7A1-208ENST00000470076 A0A0U1RQV1 116 aa10.21□□□□□ -0.77
COL7A1-208ENST00000470076 RPL24P83731 157 aaKnown RBP10.21□□□□□ -0.77
COL7A1-208ENST00000470076 RHEBQ15382 184 aa10.21□□□□□ -0.77
COL7A1-208ENST00000470076 HBDP02042 147 aa10.2□□□□□ -0.78
COL7A1-208ENST00000470076 LINC00614P0C842 121 aa10.2□□□□□ -0.78
COL7A1-208ENST00000470076 PRLHP81277 87 aa10.2□□□□□ -0.78
COL7A1-208ENST00000470076 SFTA2Q6UW10 78 aa10.2□□□□□ -0.78
COL7A1-208ENST00000470076 LINC00304Q8N9R0 145 aa10.2□□□□□ -0.78
COL7A1-208ENST00000470076 TMEM126AQ9H061 195 aa10.2□□□□□ -0.78
COL7A1-208ENST00000470076 RPS10P5Q9NQ39 176 aa10.2□□□□□ -0.78
COL7A1-208ENST00000470076 IGKV2D-26A0A0A0MRZ7 120 aa10.19□□□□□ -0.78
COL7A1-208ENST00000470076 C10orf91Q5T1B1 145 aa10.19□□□□□ -0.78
COL7A1-208ENST00000470076 FAM19A1Q7Z5A9 133 aa10.19□□□□□ -0.78
COL7A1-208ENST00000470076 C18orf32Q8TCD1 76 aa10.19□□□□□ -0.78
COL7A1-208ENST00000470076 URB1-AS1Q96HZ7 61 aa10.19□□□□□ -0.78
COL7A1-208ENST00000470076 COMMD7Q86VX2 200 aa10.18□□□□□ -0.78
COL7A1-208ENST00000470076 TMEM238C9JI98 176 aa10.17□□□□□ -0.78
COL7A1-208ENST00000470076 ZNF625Q96I27 306 aaPredicted RBP10.17□□□□□ -0.78
COL7A1-208ENST00000470076 TRAPPC1Q9Y5R8 145 aa10.17□□□□□ -0.78
COL7A1-208ENST00000470076 C11orf86A6NJI1 115 aa10.16□□□□□ -0.78
COL7A1-208ENST00000470076 M0R378 163 aa10.16□□□□□ -0.78
COL7A1-208ENST00000470076 CTAG1AP78358 180 aa10.16□□□□□ -0.78
COL7A1-208ENST00000470076 TMEM170BQ5T4T1 132 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 137.9 ms