RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 LINC00269Q8N2A0 174 aa5.21□□□□□ -1.58
COL6A3-208ENST00000468792 DNAH9Q9NYC9 4486 aa5.21□□□□□ -1.58
COL6A3-208ENST00000468792 G3V4G9 280 aa5.2□□□□□ -1.58
COL6A3-208ENST00000468792 COX7A2LO14548 114 aa5.2□□□□□ -1.58
COL6A3-208ENST00000468792 C6orf226Q5I0X4 101 aa5.2□□□□□ -1.58
COL6A3-208ENST00000468792 CHCHD10Q8WYQ3 142 aaPredicted RBP5.2□□□□□ -1.58
COL6A3-208ENST00000468792 SPATA25Q9BR10 227 aa5.2□□□□□ -1.58
COL6A3-208ENST00000468792 TM2D3Q9BRN9 247 aa5.2□□□□□ -1.58
COL6A3-208ENST00000468792 KLK5Q9Y337 293 aaPredicted RBP5.2□□□□□ -1.58
COL6A3-208ENST00000468792 DYNC2H1Q8NCM8 4307 aaKnown RBP5.19□□□□□ -1.58
COL6A3-208ENST00000468792 TRAV13-2A0A0B4J235 113 aa5.19□□□□□ -1.58
COL6A3-208ENST00000468792 IGKV3OR2-268A0A0C4DH90 116 aa5.19□□□□□ -1.58
COL6A3-208ENST00000468792 TCL1BO95988 128 aa5.19□□□□□ -1.58
COL6A3-208ENST00000468792 ANGP03950 147 aaKnown RBP5.19□□□□□ -1.58
COL6A3-208ENST00000468792 SCGB1C2P0DMR2 95 aa5.19□□□□□ -1.58
COL6A3-208ENST00000468792 XCL1P47992 114 aa5.19□□□□□ -1.58
COL6A3-208ENST00000468792 FOXI1Q12951 378 aa5.19□□□□□ -1.58
COL6A3-208ENST00000468792 KIAA0087Q14695 138 aa5.19□□□□□ -1.58
COL6A3-208ENST00000468792 ATXN8Q156A1 80 aa5.19□□□□□ -1.58
COL6A3-208ENST00000468792 SOSTDC1Q6X4U4 206 aa5.19□□□□□ -1.58
COL6A3-208ENST00000468792 C5orf38Q86SI9 138 aa5.19□□□□□ -1.58
COL6A3-208ENST00000468792 CYSRT1A8MQ03 144 aa5.18□□□□□ -1.58
COL6A3-208ENST00000468792 J3QR89 54 aa5.18□□□□□ -1.58
COL6A3-208ENST00000468792 HTN3P15516 51 aa5.18□□□□□ -1.58
COL6A3-208ENST00000468792 PSMB2P49721 201 aa5.18□□□□□ -1.58
COL6A3-208ENST00000468792 WFDC2Q14508 124 aa5.18□□□□□ -1.58
COL6A3-208ENST00000468792 Q6ZTC4 211 aa5.18□□□□□ -1.58
COL6A3-208ENST00000468792 C11orf45Q8TAV5 145 aa5.18□□□□□ -1.58
COL6A3-208ENST00000468792 DNAH1Q9P2D7 4330 aa5.18□□□□□ -1.58
COL6A3-208ENST00000468792 NOTCH1P46531 2555 aa5.18□□□□□ -1.58
COL6A3-208ENST00000468792 GVQW2A0A096LPI5 108 aaPredicted RBP5.17□□□□□ -1.58
COL6A3-208ENST00000468792 A0A0J9YWU9 116 aa5.17□□□□□ -1.58
COL6A3-208ENST00000468792 TRIAP1O43715 76 aa5.17□□□□□ -1.58
COL6A3-208ENST00000468792 Q1RN00 199 aa5.17□□□□□ -1.58
COL6A3-208ENST00000468792 MIR7-3HGQ8N6C7 128 aa5.17□□□□□ -1.58
COL6A3-208ENST00000468792 DAND5Q8N907 189 aa5.17□□□□□ -1.58
COL6A3-208ENST00000468792 C15orf53Q8NAA6 179 aa5.17□□□□□ -1.58
COL6A3-208ENST00000468792 RETNQ9HD89 108 aa5.17□□□□□ -1.58
COL6A3-208ENST00000468792 TOMM7Q9P0U1 55 aa5.17□□□□□ -1.58
COL6A3-208ENST00000468792 DEFB131BA0A096LNP1 70 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 TRAV10A0A0B4J240 114 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 F8WDY8 70 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 LST1O00453 97 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 NDUFC2O95298 119 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 MALP21145 153 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 RPL13AP40429 203 aaKnown RBP5.16□□□□□ -1.58
COL6A3-208ENST00000468792 RPL28P46779 137 aaKnown RBP5.16□□□□□ -1.58
COL6A3-208ENST00000468792 LINC00158P58513 81 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 CKS1BP61024 79 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 LINC01556Q5JQF7 62 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 CFAP161Q6P656 301 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 ENHOQ6UWT2 76 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 SND1-IT1Q9HBX3 110 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 CBY1Q9Y3M2 126 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 TENM3Q9P273 2699 aa5.16□□□□□ -1.58
COL6A3-208ENST00000468792 TRBV10-2A0A0K0K1G8 114 aa5.15□□□□□ -1.59
COL6A3-208ENST00000468792 K7EIL1 84 aa5.15□□□□□ -1.59
COL6A3-208ENST00000468792 CCL18P55774 89 aa5.15□□□□□ -1.59
COL6A3-208ENST00000468792 LINC01620Q4KN68 170 aa5.15□□□□□ -1.59
COL6A3-208ENST00000468792 TEN1Q86WV5 123 aa5.15□□□□□ -1.59
COL6A3-208ENST00000468792 CARD19Q96LW7 228 aa5.15□□□□□ -1.59
COL6A3-208ENST00000468792 KLK12Q9UKR0 248 aa5.15□□□□□ -1.59
COL6A3-208ENST00000468792 IGKV2-28A0A075B6P5 120 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 GAGE12HA6NDE8 117 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 H3BT86 120 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 SLC25A20O43772 301 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 IGKV2D-28P01615 120 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 CRPP02741 224 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 DNAH10OSP0CZ25 163 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 NPC2P61916 151 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 ESRGQ1W209 222 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 ETDBQ3ZM63 59 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 KRTAP26-1Q6PEX3 210 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 CLPSL2Q6UWE3 100 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 MGAM2Q2M2H8 2515 aa5.14□□□□□ -1.59
COL6A3-208ENST00000468792 A0A0U1RRA0 63 aa5.13□□□□□ -1.59
COL6A3-208ENST00000468792 H0YGX0 51 aa5.13□□□□□ -1.59
COL6A3-208ENST00000468792 H7C2G1 150 aa5.13□□□□□ -1.59
COL6A3-208ENST00000468792 TRACP01848 142 aa5.13□□□□□ -1.59
COL6A3-208ENST00000468792 NANOS2P60321 138 aaKnown RBP5.13□□□□□ -1.59
COL6A3-208ENST00000468792 Q8N3U1 123 aa5.13□□□□□ -1.59
COL6A3-208ENST00000468792 ANKRD29Q8N6D5 301 aa5.13□□□□□ -1.59
COL6A3-208ENST00000468792 PPDPFLQ8WWR9 84 aa5.13□□□□□ -1.59
COL6A3-208ENST00000468792 IGLV10-54A0A075B6I4 117 aa5.12□□□□□ -1.59
COL6A3-208ENST00000468792 C9JAW5 83 aa5.12□□□□□ -1.59
COL6A3-208ENST00000468792 PFN2P35080 140 aa5.12□□□□□ -1.59
COL6A3-208ENST00000468792 SPAG11BQ08648 103 aa5.12□□□□□ -1.59
COL6A3-208ENST00000468792 WFDC10BQ8IUB3 73 aa5.12□□□□□ -1.59
COL6A3-208ENST00000468792 LINC00337Q8N6G1 96 aa5.12□□□□□ -1.59
COL6A3-208ENST00000468792 NTN5Q8WTR8 489 aaPredicted RBP5.12□□□□□ -1.59
COL6A3-208ENST00000468792 UBE2WQ96B02 151 aa5.12□□□□□ -1.59
COL6A3-208ENST00000468792 C2orf48Q96LS8 159 aa5.12□□□□□ -1.59
COL6A3-208ENST00000468792 C2orf82Q6UX34 121 aa5.11□□□□□ -1.59
COL6A3-208ENST00000468792 UPK3BQ9BT76 320 aa5.11□□□□□ -1.59
COL6A3-208ENST00000468792 A0A1B0GX51 115 aa5.1□□□□□ -1.59
COL6A3-208ENST00000468792 DEFB121Q5J5C9 76 aa5.1□□□□□ -1.59
COL6A3-208ENST00000468792 VPS25Q9BRG1 176 aa5.1□□□□□ -1.59
COL6A3-208ENST00000468792 TMEM126AQ9H061 195 aa5.1□□□□□ -1.59
COL6A3-208ENST00000468792 MTURNQ8N3F0 131 aa5.09□□□□□ -1.59
COL6A3-208ENST00000468792 SMIM11BQ8TCY0 68 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms