RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 AMELXQ99217 191 aa12.26□□□□□ -0.45
COL6A1-203ENST00000466285 XAGE1AQ9HD64 81 aa12.26□□□□□ -0.45
COL6A1-203ENST00000466285 LAMTOR2Q9Y2Q5 125 aa12.26□□□□□ -0.45
COL6A1-203ENST00000466285 C2orf66Q6UXQ4 117 aa12.25□□□□□ -0.45
COL6A1-203ENST00000466285 TOMM7Q9P0U1 55 aa12.25□□□□□ -0.45
COL6A1-203ENST00000466285 COLCA2A8K830 154 aa12.24□□□□□ -0.45
COL6A1-203ENST00000466285 PACRGQ96M98 296 aaPredicted RBP12.24□□□□□ -0.45
COL6A1-203ENST00000466285 SCO1O75880 301 aa12.23□□□□□ -0.45
COL6A1-203ENST00000466285 PRR4Q16378 134 aa12.23□□□□□ -0.45
COL6A1-203ENST00000466285 MAP1LC3AQ9H492 121 aa12.23□□□□□ -0.45
COL6A1-203ENST00000466285 IGIPA6NJ69 53 aa12.22□□□□□ -0.45
COL6A1-203ENST00000466285 Q8N8P6 123 aa12.22□□□□□ -0.45
COL6A1-203ENST00000466285 MRPL18Q9H0U6 180 aaKnown RBP12.22□□□□□ -0.45
COL6A1-203ENST00000466285 CYSLTR1Q9Y271 337 aa12.22□□□□□ -0.45
COL6A1-203ENST00000466285 C22orf24Q9Y442 160 aa12.22□□□□□ -0.45
COL6A1-203ENST00000466285 LINC01561Q8N1V8 128 aa12.21□□□□□ -0.45
COL6A1-203ENST00000466285 C2orf88Q9BSF0 95 aa12.21□□□□□ -0.45
COL6A1-203ENST00000466285 A0A087X002 238 aa12.2□□□□□ -0.46
COL6A1-203ENST00000466285 KIAA1644Q3SXP7 199 aa12.2□□□□□ -0.46
COL6A1-203ENST00000466285 ALKBH7Q9BT30 221 aaPredicted RBP12.2□□□□□ -0.46
COL6A1-203ENST00000466285 CDKN2A-AS1Q9UH64 79 aa12.2□□□□□ -0.46
COL6A1-203ENST00000466285 ZNF861PO60384 105 aa12.19□□□□□ -0.46
COL6A1-203ENST00000466285 FAM19A3Q7Z5A8 133 aa12.19□□□□□ -0.46
COL6A1-203ENST00000466285 Q6ZN92 141 aa12.18□□□□□ -0.46
COL6A1-203ENST00000466285 Q8IZM0 81 aa12.18□□□□□ -0.46
COL6A1-203ENST00000466285 TRAPPC1Q9Y5R8 145 aa12.18□□□□□ -0.46
COL6A1-203ENST00000466285 PRSS2P07478 247 aa12.17□□□□□ -0.46
COL6A1-203ENST00000466285 CKS1BP61024 79 aa12.17□□□□□ -0.46
COL6A1-203ENST00000466285 FABP9Q0Z7S8 132 aa12.17□□□□□ -0.46
COL6A1-203ENST00000466285 VCX2Q9H322 139 aa12.17□□□□□ -0.46
COL6A1-203ENST00000466285 TSPAN13O95857 204 aa12.16□□□□□ -0.46
COL6A1-203ENST00000466285 RPL13AP40429 203 aaKnown RBP12.16□□□□□ -0.46
COL6A1-203ENST00000466285 C6orf226Q5I0X4 101 aa12.15□□□□□ -0.46
COL6A1-203ENST00000466285 LINC01546A6NGU7 62 aa12.14□□□□□ -0.47
COL6A1-203ENST00000466285 ANAPC11Q9NYG5 84 aa12.14□□□□□ -0.47
COL6A1-203ENST00000466285 ORMDL2Q53FV1 153 aa12.13□□□□□ -0.47
COL6A1-203ENST00000466285 SMIM1B2RUZ4 78 aa12.12□□□□□ -0.47
COL6A1-203ENST00000466285 F8VRH5 84 aa12.12□□□□□ -0.47
COL6A1-203ENST00000466285 NUPR1O60356 82 aa12.12□□□□□ -0.47
COL6A1-203ENST00000466285 MRPL55Q7Z7F7 128 aaKnown RBP12.12□□□□□ -0.47
COL6A1-203ENST00000466285 RPL37AP8A6NKH3 93 aa12.11□□□□□ -0.47
COL6A1-203ENST00000466285 K7EMI3 77 aa12.11□□□□□ -0.47
COL6A1-203ENST00000466285 C18orf32Q8TCD1 76 aa12.11□□□□□ -0.47
COL6A1-203ENST00000466285 NXT2Q9NPJ8 142 aaKnown RBP12.11□□□□□ -0.47
COL6A1-203ENST00000466285 FAT4Q6V0I7 4981 aa12.1□□□□□ -0.47
COL6A1-203ENST00000466285 GAGE10A6NGK3 116 aa12.1□□□□□ -0.47
COL6A1-203ENST00000466285 TRGC2P03986 189 aa12.1□□□□□ -0.47
COL6A1-203ENST00000466285 HERVK_113P63121 156 aa12.1□□□□□ -0.47
COL6A1-203ENST00000466285 BCE1O60756 84 aa12.09□□□□□ -0.47
COL6A1-203ENST00000466285 NPSP0C0P6 89 aa12.09□□□□□ -0.47
COL6A1-203ENST00000466285 TOMM6Q96B49 74 aa12.09□□□□□ -0.47
COL6A1-203ENST00000466285 URB1-AS1Q96HZ7 61 aa12.09□□□□□ -0.47
COL6A1-203ENST00000466285 LINC00167Q96N53 147 aa12.09□□□□□ -0.47
COL6A1-203ENST00000466285 TIMM17AQ99595 171 aa12.09□□□□□ -0.47
COL6A1-203ENST00000466285 MUC17Q685J3 4493 aa12.08□□□□□ -0.48
COL6A1-203ENST00000466285 KRTAP13-2Q52LG2 175 aa12.08□□□□□ -0.48
COL6A1-203ENST00000466285 GEMIN7Q9H840 131 aaKnown RBP12.08□□□□□ -0.48
COL6A1-203ENST00000466285 TP73-AS1Q9UF72 201 aa12.08□□□□□ -0.48
COL6A1-203ENST00000466285 LBHQ53QV2 105 aaPredicted RBP12.07□□□□□ -0.48
COL6A1-203ENST00000466285 KRTAP13-1Q8IUC0 172 aa12.06□□□□□ -0.48
COL6A1-203ENST00000466285 SPINK8P0C7L1 97 aa12.05□□□□□ -0.48
COL6A1-203ENST00000466285 RETNLBQ9BQ08 111 aa12.05□□□□□ -0.48
COL6A1-203ENST00000466285 IGLV5-45A0A087WSX0 123 aa12.04□□□□□ -0.48
COL6A1-203ENST00000466285 RPL28P46779 137 aaKnown RBP12.04□□□□□ -0.48
COL6A1-203ENST00000466285 COX7B2Q8TF08 81 aa12.04□□□□□ -0.48
COL6A1-203ENST00000466285 TYMSOSQ8TAI1 123 aa12.03□□□□□ -0.48
COL6A1-203ENST00000466285 RAB5BP61020 215 aa12.02□□□□□ -0.49
COL6A1-203ENST00000466285 SCGB3A1Q96QR1 104 aa12.02□□□□□ -0.49
COL6A1-203ENST00000466285 A0A096LNJ9 63 aa12.01□□□□□ -0.49
COL6A1-203ENST00000466285 TINCRA0A1B0GVN0 87 aa12.01□□□□□ -0.49
COL6A1-203ENST00000466285 CXCL5P42830 114 aa12.01□□□□□ -0.49
COL6A1-203ENST00000466285 SEC11AP67812 179 aa12.01□□□□□ -0.49
COL6A1-203ENST00000466285 ERASQ7Z444 233 aa12.01□□□□□ -0.49
COL6A1-203ENST00000466285 IGLV5-37A0A075B6J1 123 aa12□□□□□ -0.49
COL6A1-203ENST00000466285 CRYGAP11844 174 aa12□□□□□ -0.49
COL6A1-203ENST00000466285 LINC00310P59036 64 aa12□□□□□ -0.49
COL6A1-203ENST00000466285 PDZD11Q5EBL8 140 aa12□□□□□ -0.49
COL6A1-203ENST00000466285 LINC00614P0C842 121 aa11.99□□□□□ -0.49
COL6A1-203ENST00000466285 PAPPA-AS1Q5QFB9 102 aa11.99□□□□□ -0.49
COL6A1-203ENST00000466285 FA2HQ7L5A8 372 aa11.99□□□□□ -0.49
COL6A1-203ENST00000466285 CST9LQ9H4G1 147 aa11.99□□□□□ -0.49
COL6A1-203ENST00000466285 IGKV2-28A0A075B6P5 120 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 HIST1H2BKO60814 126 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 IGKV2D-28P01615 120 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 HIST1H2BJP06899 126 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 HIST1H2BOP23527 126 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 HIST1H2BBP33778 126 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 HIST1H2BDP58876 126 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 HIST1H2BCP62807 126 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 HIST2H2BEQ16778 126 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.98□□□□□ -0.49
COL6A1-203ENST00000466285 Q8NDZ9 215 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 HIST1H2BHQ93079 126 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 CHCHD1Q96BP2 118 aaKnown RBP11.98□□□□□ -0.49
COL6A1-203ENST00000466285 HIST1H2BNQ99877 126 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 HIST1H2BMQ99879 126 aa11.98□□□□□ -0.49
COL6A1-203ENST00000466285 PRLHP81277 87 aa11.97□□□□□ -0.49
COL6A1-203ENST00000466285 LCE2AQ5TA79 106 aaPredicted RBP11.97□□□□□ -0.49
COL6A1-203ENST00000466285 KRTAP9-2Q9BYQ4 174 aa11.97□□□□□ -0.49
COL6A1-203ENST00000466285 G0S2P27469 103 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms