RNA–Protein interactions for RNA: ENST00000465074.1

XRN1-204, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 643 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-204ENST00000465074 KIAA0087Q14695 138 aa7.61□□□□□ -1.19
XRN1-204ENST00000465074 C6orf226Q5I0X4 101 aa7.61□□□□□ -1.19
XRN1-204ENST00000465074 TIMM17AQ99595 171 aa7.61□□□□□ -1.19
XRN1-204ENST00000465074 HERC1Q15751 4861 aa7.61□□□□□ -1.19
XRN1-204ENST00000465074 HERVK_113P63121 156 aa7.6□□□□□ -1.19
XRN1-204ENST00000465074 SEC11AP67812 179 aa7.6□□□□□ -1.19
XRN1-204ENST00000465074 Q6ZRP5 223 aa7.6□□□□□ -1.19
XRN1-204ENST00000465074 PHF5AQ7RTV0 110 aaKnown RBP7.6□□□□□ -1.19
XRN1-204ENST00000465074 FAM19A5Q7Z5A7 132 aaPredicted RBP7.6□□□□□ -1.19
XRN1-204ENST00000465074 SVBPQ8N300 66 aa7.6□□□□□ -1.19
XRN1-204ENST00000465074 LINC00469Q8N7U9 141 aa7.6□□□□□ -1.19
XRN1-204ENST00000465074 CDKN2A-AS1Q9UH64 79 aa7.6□□□□□ -1.19
XRN1-204ENST00000465074 FAM168BA1KXE4 195 aa7.59□□□□□ -1.19
XRN1-204ENST00000465074 NDUFA6P56556 154 aa7.59□□□□□ -1.19
XRN1-204ENST00000465074 PKHD1L1Q86WI1 4243 aa7.59□□□□□ -1.19
XRN1-204ENST00000465074 LINC01561Q8N1V8 128 aa7.58□□□□□ -1.2
XRN1-204ENST00000465074 LRP1Q07954 4544 aaKnown RBP7.57□□□□□ -1.2
XRN1-204ENST00000465074 TRBV30A0A0K0K1B3 111 aa7.57□□□□□ -1.2
XRN1-204ENST00000465074 PMCHL1Q16048 86 aa7.57□□□□□ -1.2
XRN1-204ENST00000465074 FAM19A3Q7Z5A8 133 aa7.57□□□□□ -1.2
XRN1-204ENST00000465074 CST9LQ9H4G1 147 aa7.57□□□□□ -1.2
XRN1-204ENST00000465074 LINC01546A6NGU7 62 aa7.56□□□□□ -1.2
XRN1-204ENST00000465074 LINC01549A6NIU2 74 aa7.56□□□□□ -1.2
XRN1-204ENST00000465074 LINC00614P0C842 121 aa7.56□□□□□ -1.2
XRN1-204ENST00000465074 TLX1NBP0CAT3 122 aa7.56□□□□□ -1.2
XRN1-204ENST00000465074 PMVKQ15126 192 aa7.56□□□□□ -1.2
XRN1-204ENST00000465074 C18orf32Q8TCD1 76 aa7.56□□□□□ -1.2
XRN1-204ENST00000465074 PSORS1C2Q9UIG4 136 aa7.56□□□□□ -1.2
XRN1-204ENST00000465074 TINCRA0A1B0GVN0 87 aa7.55□□□□□ -1.2
XRN1-204ENST00000465074 NDUFC2-KCTD14E9PQ53 114 aa7.55□□□□□ -1.2
XRN1-204ENST00000465074 SPINK8P0C7L1 97 aa7.55□□□□□ -1.2
XRN1-204ENST00000465074 C1orf137Q5JT78 98 aa7.55□□□□□ -1.2
XRN1-204ENST00000465074 Q8IZM0 81 aa7.55□□□□□ -1.2
XRN1-204ENST00000465074 COX7B2Q8TF08 81 aa7.54□□□□□ -1.2
XRN1-204ENST00000465074 KRTAP4-12Q9BQ66 201 aa7.54□□□□□ -1.2
XRN1-204ENST00000465074 SMIM1B2RUZ4 78 aa7.53□□□□□ -1.2
XRN1-204ENST00000465074 F8VRH5 84 aa7.53□□□□□ -1.2
XRN1-204ENST00000465074 M0QXV9 152 aa7.53□□□□□ -1.2
XRN1-204ENST00000465074 HBDP02042 147 aa7.53□□□□□ -1.2
XRN1-204ENST00000465074 RAB5BP61020 215 aa7.53□□□□□ -1.2
XRN1-204ENST00000465074 UBE2BP63146 152 aa7.53□□□□□ -1.2
XRN1-204ENST00000465074 SERTAD4-AS1Q5TG53 156 aa7.53□□□□□ -1.2
XRN1-204ENST00000465074 SPINK6Q6UWN8 80 aa7.53□□□□□ -1.2
XRN1-204ENST00000465074 URB1-AS1Q96HZ7 61 aa7.53□□□□□ -1.2
XRN1-204ENST00000465074 XAGE1AQ9HD64 81 aa7.53□□□□□ -1.2
XRN1-204ENST00000465074 PDZD11Q5EBL8 140 aa7.52□□□□□ -1.21
XRN1-204ENST00000465074 C9orf129Q5T035 196 aaKnown RBP7.52□□□□□ -1.21
XRN1-204ENST00000465074 REG3GQ6UW15 175 aa7.52□□□□□ -1.21
XRN1-204ENST00000465074 SLC7A5P1Q8MH63 180 aa7.52□□□□□ -1.21
XRN1-204ENST00000465074 FAT3Q8TDW7 4589 aa7.52□□□□□ -1.21
XRN1-204ENST00000465074 A0A096LNJ9 63 aa7.51□□□□□ -1.21
XRN1-204ENST00000465074 H3BRM9 83 aa7.51□□□□□ -1.21
XRN1-204ENST00000465074 MT1HL1P0DM35 61 aa7.51□□□□□ -1.21
XRN1-204ENST00000465074 CBLN2Q8IUK8 224 aa7.51□□□□□ -1.21
XRN1-204ENST00000465074 CXCL5P42830 114 aa7.5□□□□□ -1.21
XRN1-204ENST00000465074 SRSF9Q13242 221 aaKnown RBP eCLIP7.5□□□□□ -1.21
XRN1-204ENST00000465074 BAGE3Q86Y29 109 aa7.5□□□□□ -1.21
XRN1-204ENST00000465074 KRTAP11-1Q8IUC1 163 aa7.5□□□□□ -1.21
XRN1-204ENST00000465074 KRTAP7-1Q8IUC3 87 aa7.5□□□□□ -1.21
XRN1-204ENST00000465074 IGLV5-45A0A087WSX0 123 aa7.49□□□□□ -1.21
XRN1-204ENST00000465074 ATP5LO75964 103 aa7.49□□□□□ -1.21
XRN1-204ENST00000465074 PLA2G2DQ9UNK4 145 aa7.49□□□□□ -1.21
XRN1-204ENST00000465074 IGLC3P0DOY3 106 aa7.48□□□□□ -1.21
XRN1-204ENST00000465074 LINC01600Q96MT4 127 aa7.48□□□□□ -1.21
XRN1-204ENST00000465074 YPEL4Q96NS1 127 aa7.48□□□□□ -1.21
XRN1-204ENST00000465074 IGLV7-43P04211 117 aa7.47□□□□□ -1.21
XRN1-204ENST00000465074 ODF1Q14990 250 aa7.47□□□□□ -1.21
XRN1-204ENST00000465074 TMEM170BQ5T4T1 132 aa7.47□□□□□ -1.21
XRN1-204ENST00000465074 TMA7Q9Y2S6 64 aaKnown RBP7.47□□□□□ -1.21
XRN1-204ENST00000465074 C22orf24Q9Y442 160 aa7.47□□□□□ -1.21
XRN1-204ENST00000465074 ZNF22P17026 224 aaPredicted RBP7.46□□□□□ -1.22
XRN1-204ENST00000465074 PFN2P35080 140 aa7.46□□□□□ -1.22
XRN1-204ENST00000465074 CHTOPQ9Y3Y2 248 aaKnown RBP7.46□□□□□ -1.22
XRN1-204ENST00000465074 C11orf86A6NJI1 115 aa7.45□□□□□ -1.22
XRN1-204ENST00000465074 LBHQ53QV2 105 aaPredicted RBP7.45□□□□□ -1.22
XRN1-204ENST00000465074 FAM19A2Q8N3H0 131 aa7.45□□□□□ -1.22
XRN1-204ENST00000465074 DIRC1Q969H9 104 aa7.45□□□□□ -1.22
XRN1-204ENST00000465074 CHCHD1Q96BP2 118 aaKnown RBP7.45□□□□□ -1.22
XRN1-204ENST00000465074 ZNF625Q96I27 306 aaPredicted RBP7.45□□□□□ -1.22
XRN1-204ENST00000465074 KRTAP9-9Q9BYP9 154 aa7.45□□□□□ -1.22
XRN1-204ENST00000465074 KRTAP9-4Q9BYQ2 154 aa7.45□□□□□ -1.22
XRN1-204ENST00000465074 GAGE10A6NGK3 116 aa7.44□□□□□ -1.22
XRN1-204ENST00000465074 H0Y8G0 127 aa7.44□□□□□ -1.22
XRN1-204ENST00000465074 HSBP1O75506 76 aa7.44□□□□□ -1.22
XRN1-204ENST00000465074 TRGC2P03986 189 aa7.44□□□□□ -1.22
XRN1-204ENST00000465074 IFI27L1Q96BM0 104 aa7.44□□□□□ -1.22
XRN1-204ENST00000465074 RPL37AP8A6NKH3 93 aa7.43□□□□□ -1.22
XRN1-204ENST00000465074 KRTAP4-8A0A0G2JLE6 195 aa7.42□□□□□ -1.22
XRN1-204ENST00000465074 IGLV5-39A0A0G2JS06 123 aa7.42□□□□□ -1.22
XRN1-204ENST00000465074 MRPL55Q7Z7F7 128 aaKnown RBP7.42□□□□□ -1.22
XRN1-204ENST00000465074 NKAPP1Q8N9T2 125 aa7.42□□□□□ -1.22
XRN1-204ENST00000465074 KRTAP10-8P60410 259 aa7.41□□□□□ -1.22
XRN1-204ENST00000465074 ERG28Q9UKR5 140 aa7.41□□□□□ -1.22
XRN1-204ENST00000465074 H0Y9J4 135 aa7.4□□□□□ -1.22
XRN1-204ENST00000465074 SCO1O75880 301 aa7.4□□□□□ -1.22
XRN1-204ENST00000465074 LINC00167Q96N53 147 aa7.4□□□□□ -1.22
XRN1-204ENST00000465074 TRAV12-1A0A0B4J245 112 aa7.39□□□□□ -1.23
XRN1-204ENST00000465074 A0A0U1RRA0 63 aa7.39□□□□□ -1.23
XRN1-204ENST00000465074 SERF1AO75920 110 aa7.39□□□□□ -1.23
XRN1-204ENST00000465074 PRR26Q8N8Z3 221 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms