RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-208ENST00000464362 COL12A1Q99715 3063 aa6.55□□□□□ -1.36
HPS4-208ENST00000464362 IGLV4-60A0A075B6I1 120 aa6.55□□□□□ -1.36
HPS4-208ENST00000464362 SMIM11BQ8TCY0 68 aa6.55□□□□□ -1.36
HPS4-208ENST00000464362 SMIM1B2RUZ4 78 aa6.54□□□□□ -1.36
HPS4-208ENST00000464362 INAFM1C9JVW0 142 aa6.54□□□□□ -1.36
HPS4-208ENST00000464362 ZNF843Q8N446 348 aa6.54□□□□□ -1.36
HPS4-208ENST00000464362 C9orf116Q5BN46 136 aaPredicted RBP6.54□□□□□ -1.36
HPS4-208ENST00000464362 CCL18P55774 89 aa6.54□□□□□ -1.36
HPS4-208ENST00000464362 C1orf195Q5TG92 126 aa6.54□□□□□ -1.36
HPS4-208ENST00000464362 TRBV6-4A0A1B0GX49 114 aa6.53□□□□□ -1.36
HPS4-208ENST00000464362 SMCPP49901 116 aaPredicted RBP6.53□□□□□ -1.36
HPS4-208ENST00000464362 C20orf197Q8N268 126 aa6.53□□□□□ -1.36
HPS4-208ENST00000464362 IBA57-AS1B1ANH7 110 aa6.53□□□□□ -1.36
HPS4-208ENST00000464362 JMJD7-PLA2G4BH0Y9G9 81 aa6.53□□□□□ -1.36
HPS4-208ENST00000464362 WFDC9Q8NEX5 89 aa6.53□□□□□ -1.36
HPS4-208ENST00000464362 DIRC1Q969H9 104 aa6.53□□□□□ -1.36
HPS4-208ENST00000464362 LINC00959A0A1B0GUT2 108 aa6.52□□□□□ -1.37
HPS4-208ENST00000464362 ETDCA0A1B0GVM5 59 aa6.52□□□□□ -1.37
HPS4-208ENST00000464362 TMEM256-PLSCR3K7ERE1 68 aa6.52□□□□□ -1.37
HPS4-208ENST00000464362 ENHOQ6UWT2 76 aa6.52□□□□□ -1.37
HPS4-208ENST00000464362 AMELXQ99217 191 aa6.52□□□□□ -1.37
HPS4-208ENST00000464362 MRPL55Q7Z7F7 128 aaKnown RBP6.51□□□□□ -1.37
HPS4-208ENST00000464362 Q6Q795 121 aa6.51□□□□□ -1.37
HPS4-208ENST00000464362 NREPQ16612 68 aa6.51□□□□□ -1.37
HPS4-208ENST00000464362 CDIP1Q9H305 208 aa6.51□□□□□ -1.37
HPS4-208ENST00000464362 A0A087WVE0 104 aa6.5□□□□□ -1.37
HPS4-208ENST00000464362 KLK5Q9Y337 293 aaPredicted RBP6.5□□□□□ -1.37
HPS4-208ENST00000464362 COX7CP15954 63 aa6.5□□□□□ -1.37
HPS4-208ENST00000464362 Q6ZQY7 126 aa6.5□□□□□ -1.37
HPS4-208ENST00000464362 GCN1Q92616 2671 aaKnown RBP6.5□□□□□ -1.37
HPS4-208ENST00000464362 TIMM17BO60830 172 aa6.5□□□□□ -1.37
HPS4-208ENST00000464362 CXCL5P42830 114 aa6.5□□□□□ -1.37
HPS4-208ENST00000464362 HELZ2Q9BYK8 2649 aaKnown RBP6.5□□□□□ -1.37
HPS4-208ENST00000464362 LRBAP50851 2863 aa6.5□□□□□ -1.37
HPS4-208ENST00000464362 IGKV2-24A0A0C4DH68 120 aa6.49□□□□□ -1.37
HPS4-208ENST00000464362 ASH1LQ9NR48 2969 aaKnown RBP6.49□□□□□ -1.37
HPS4-208ENST00000464362 FAM236DA0A1B0GTK5 79 aa6.49□□□□□ -1.37
HPS4-208ENST00000464362 FAM236CP0DP71 79 aa6.49□□□□□ -1.37
HPS4-208ENST00000464362 UPK3BQ9BT76 320 aa6.49□□□□□ -1.37
HPS4-208ENST00000464362 FLNCQ14315 2725 aa6.49□□□□□ -1.37
HPS4-208ENST00000464362 NBEAL2Q6ZNJ1 2754 aa6.49□□□□□ -1.37
HPS4-208ENST00000464362 Q8N2B8 174 aa6.49□□□□□ -1.37
HPS4-208ENST00000464362 MPLKIPQ8TAP9 179 aa6.49□□□□□ -1.37
HPS4-208ENST00000464362 A0A096LNI7 61 aa6.48□□□□□ -1.37
HPS4-208ENST00000464362 IMUPQ9GZP8 106 aa6.48□□□□□ -1.37
HPS4-208ENST00000464362 SEC61GP60059 68 aa6.48□□□□□ -1.37
HPS4-208ENST00000464362 UNQ6190/PRO20217Q6UXQ8 127 aa6.48□□□□□ -1.37
HPS4-208ENST00000464362 PRO0461Q9UI25 63 aa6.48□□□□□ -1.37
HPS4-208ENST00000464362 A0A087WYN8 130 aa6.48□□□□□ -1.37
HPS4-208ENST00000464362 COX7BP24311 80 aa6.48□□□□□ -1.37
HPS4-208ENST00000464362 FUSP35637 526 aaKnown RBP eCLIP6.48□□□□□ -1.37
HPS4-208ENST00000464362 IGKV2-28A0A075B6P5 120 aa6.47□□□□□ -1.37
HPS4-208ENST00000464362 A8MTW9 85 aa6.47□□□□□ -1.37
HPS4-208ENST00000464362 IGKV2D-28P01615 120 aa6.47□□□□□ -1.37
HPS4-208ENST00000464362 TEX15Q9BXT5 2789 aa6.47□□□□□ -1.37
HPS4-208ENST00000464362 ITPR1Q14643 2758 aa6.47□□□□□ -1.37
HPS4-208ENST00000464362 USP17L23D6RBM5 183 aa6.46□□□□□ -1.37
HPS4-208ENST00000464362 SERP2Q8N6R1 65 aa6.46□□□□□ -1.38
HPS4-208ENST00000464362 C3orf84H3BNL1 204 aa6.46□□□□□ -1.38
HPS4-208ENST00000464362 CD164L2Q6UWJ8 174 aa6.46□□□□□ -1.38
HPS4-208ENST00000464362 NTM-AS1Q6ZSK4 140 aa6.46□□□□□ -1.38
HPS4-208ENST00000464362 LINC01546A6NGU7 62 aa6.45□□□□□ -1.38
HPS4-208ENST00000464362 LINC00337Q8N6G1 96 aa6.45□□□□□ -1.38
HPS4-208ENST00000464362 FAM19A4Q96LR4 140 aa6.45□□□□□ -1.38
HPS4-208ENST00000464362 LYRM9A8MSI8 78 aa6.45□□□□□ -1.38
HPS4-208ENST00000464362 HIGD2AQ9BW72 106 aa6.45□□□□□ -1.38
HPS4-208ENST00000464362 UBR5O95071 2799 aaPredicted RBP6.45□□□□□ -1.38
HPS4-208ENST00000464362 FAM240AA0A1B0GVK7 77 aa6.45□□□□□ -1.38
HPS4-208ENST00000464362 CYSRT1A8MQ03 144 aa6.45□□□□□ -1.38
HPS4-208ENST00000464362 LY6G6DO95868 133 aa6.45□□□□□ -1.38
HPS4-208ENST00000464362 C11orf72Q8NBR9 251 aa6.45□□□□□ -1.38
HPS4-208ENST00000464362 FHL2Q14192 279 aa6.44□□□□□ -1.38
HPS4-208ENST00000464362 RETNQ9HD89 108 aa6.44□□□□□ -1.38
HPS4-208ENST00000464362 NOTCH1P46531 2555 aa6.44□□□□□ -1.38
HPS4-208ENST00000464362 CDK2AP2O75956 126 aa6.44□□□□□ -1.38
HPS4-208ENST00000464362 BEAN1Q3B7T3 259 aa6.44□□□□□ -1.38
HPS4-208ENST00000464362 C6orf223Q8N319 242 aa6.44□□□□□ -1.38
HPS4-208ENST00000464362 SNURFQ9Y675 71 aa6.44□□□□□ -1.38
HPS4-208ENST00000464362 DEFB131BA0A096LNP1 70 aa6.43□□□□□ -1.38
HPS4-208ENST00000464362 IGLV1-51P01701 117 aa6.43□□□□□ -1.38
HPS4-208ENST00000464362 NDUFC2-KCTD14E9PQ53 114 aa6.43□□□□□ -1.38
HPS4-208ENST00000464362 BRI3O95415 125 aa6.43□□□□□ -1.38
HPS4-208ENST00000464362 C11orf45Q8TAV5 145 aa6.43□□□□□ -1.38
HPS4-208ENST00000464362 NBEAL1Q6ZS30 2694 aa6.43□□□□□ -1.38
HPS4-208ENST00000464362 EIF4EBP3O60516 100 aaPredicted RBP6.43□□□□□ -1.38
HPS4-208ENST00000464362 CCKP06307 115 aa6.43□□□□□ -1.38
HPS4-208ENST00000464362 SOSTDC1Q6X4U4 206 aa6.43□□□□□ -1.38
HPS4-208ENST00000464362 RMI2Q96E14 147 aa6.43□□□□□ -1.38
HPS4-208ENST00000464362 UNC79Q9P2D8 2635 aa6.42□□□□□ -1.38
HPS4-208ENST00000464362 A0A087WZ39 114 aa6.42□□□□□ -1.38
HPS4-208ENST00000464362 HILS1P60008 231 aa6.42□□□□□ -1.38
HPS4-208ENST00000464362 KPRPQ5T749 579 aaPredicted RBP6.42□□□□□ -1.38
HPS4-208ENST00000464362 PRO0628Q9UI54 55 aa6.42□□□□□ -1.38
HPS4-208ENST00000464362 BPY2O14599 106 aa6.42□□□□□ -1.38
HPS4-208ENST00000464362 SMG1Q96Q15 3661 aaKnown RBP6.41□□□□□ -1.38
HPS4-208ENST00000464362 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.41□□□□□ -1.38
HPS4-208ENST00000464362 RPL37AP8A6NKH3 93 aa6.41□□□□□ -1.38
HPS4-208ENST00000464362 RPL28P46779 137 aaKnown RBP6.41□□□□□ -1.38
HPS4-208ENST00000464362 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.41□□□□□ -1.38
HPS4-208ENST00000464362 NDUFS5O43920 106 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms