RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 TP73-AS1Q9UF72 201 aa13.33□□□□□ -0.28
USP4-208ENST00000464168 A0A0U1RQV1 116 aa13.32□□□□□ -0.28
USP4-208ENST00000464168 MRPL55Q7Z7F7 128 aaKnown RBP13.32□□□□□ -0.28
USP4-208ENST00000464168 CDKN2A-AS1Q9UH64 79 aa13.32□□□□□ -0.28
USP4-208ENST00000464168 RPL28P46779 137 aaKnown RBP13.31□□□□□ -0.28
USP4-208ENST00000464168 ORMDL2Q53FV1 153 aa13.31□□□□□ -0.28
USP4-208ENST00000464168 F8VRH5 84 aa13.3□□□□□ -0.28
USP4-208ENST00000464168 BCE1O60756 84 aa13.3□□□□□ -0.28
USP4-208ENST00000464168 CRYGAP11844 174 aa13.29□□□□□ -0.28
USP4-208ENST00000464168 HERVK_113P63121 156 aa13.29□□□□□ -0.28
USP4-208ENST00000464168 TYMSOSQ8TAI1 123 aa13.28□□□□□ -0.28
USP4-208ENST00000464168 FAT4Q6V0I7 4981 aa13.27□□□□□ -0.29
USP4-208ENST00000464168 K7EMI3 77 aa13.27□□□□□ -0.29
USP4-208ENST00000464168 SEC11AP67812 179 aa13.27□□□□□ -0.29
USP4-208ENST00000464168 KRTAP9-2Q9BYQ4 174 aa13.27□□□□□ -0.29
USP4-208ENST00000464168 LINC00167Q96N53 147 aa13.26□□□□□ -0.29
USP4-208ENST00000464168 GEMIN7Q9H840 131 aaKnown RBP13.26□□□□□ -0.29
USP4-208ENST00000464168 RPL37AP8A6NKH3 93 aa13.25□□□□□ -0.29
USP4-208ENST00000464168 ANAPC11Q9NYG5 84 aa13.25□□□□□ -0.29
USP4-208ENST00000464168 PAPPA-AS1Q5QFB9 102 aa13.24□□□□□ -0.29
USP4-208ENST00000464168 NXT2Q9NPJ8 142 aaKnown RBP13.24□□□□□ -0.29
USP4-208ENST00000464168 A0A1B0GVG6 124 aa13.23□□□□□ -0.29
USP4-208ENST00000464168 CXCL5P42830 114 aa13.23□□□□□ -0.29
USP4-208ENST00000464168 TIMM17AQ99595 171 aa13.23□□□□□ -0.29
USP4-208ENST00000464168 GAGE10A6NGK3 116 aa13.21□□□□□ -0.29
USP4-208ENST00000464168 SMIM1B2RUZ4 78 aa13.21□□□□□ -0.29
USP4-208ENST00000464168 KRTAP13-2Q52LG2 175 aa13.21□□□□□ -0.29
USP4-208ENST00000464168 LCE2AQ5TA79 106 aaPredicted RBP13.21□□□□□ -0.29
USP4-208ENST00000464168 TOMM6Q96B49 74 aa13.21□□□□□ -0.29
USP4-208ENST00000464168 MT-ND4LP03901 98 aa13.2□□□□□ -0.3
USP4-208ENST00000464168 KRTAP13-1Q8IUC0 172 aa13.2□□□□□ -0.3
USP4-208ENST00000464168 ANAPC16Q96DE5 110 aa13.2□□□□□ -0.3
USP4-208ENST00000464168 G0S2P27469 103 aa13.19□□□□□ -0.3
USP4-208ENST00000464168 PNRC1Q12796 327 aaPredicted RBP13.19□□□□□ -0.3
USP4-208ENST00000464168 PDZD11Q5EBL8 140 aa13.18□□□□□ -0.3
USP4-208ENST00000464168 COX7B2Q8TF08 81 aa13.18□□□□□ -0.3
USP4-208ENST00000464168 IGLV5-37A0A075B6J1 123 aa13.17□□□□□ -0.3
USP4-208ENST00000464168 ERASQ7Z444 233 aa13.17□□□□□ -0.3
USP4-208ENST00000464168 RETNLBQ9BQ08 111 aa13.16□□□□□ -0.3
USP4-208ENST00000464168 IGLV5-45A0A087WSX0 123 aa13.15□□□□□ -0.3
USP4-208ENST00000464168 TINCRA0A1B0GVN0 87 aa13.15□□□□□ -0.3
USP4-208ENST00000464168 ADCYAP1P18509 176 aa13.15□□□□□ -0.3
USP4-208ENST00000464168 UBE2AP49459 152 aa13.15□□□□□ -0.3
USP4-208ENST00000464168 RAB5BP61020 215 aa13.15□□□□□ -0.3
USP4-208ENST00000464168 SCGB3A1Q96QR1 104 aa13.15□□□□□ -0.3
USP4-208ENST00000464168 FAM229BQ4G0N7 80 aa13.14□□□□□ -0.31
USP4-208ENST00000464168 NKAPP1Q8N9T2 125 aa13.13□□□□□ -0.31
USP4-208ENST00000464168 KIAA1644Q3SXP7 199 aa13.12□□□□□ -0.31
USP4-208ENST00000464168 LINC00304Q8N9R0 145 aa13.12□□□□□ -0.31
USP4-208ENST00000464168 MUC17Q685J3 4493 aa13.11□□□□□ -0.31
USP4-208ENST00000464168 SCO1O75880 301 aa13.11□□□□□ -0.31
USP4-208ENST00000464168 SPINK8P0C7L1 97 aa13.1□□□□□ -0.31
USP4-208ENST00000464168 CST9LQ9H4G1 147 aa13.1□□□□□ -0.31
USP4-208ENST00000464168 IGKV2-28A0A075B6P5 120 aa13.09□□□□□ -0.31
USP4-208ENST00000464168 IGKV2D-28P01615 120 aa13.09□□□□□ -0.31
USP4-208ENST00000464168 TPRXLQ17RH7 258 aa13.07□□□□□ -0.32
USP4-208ENST00000464168 IGKV2D-26A0A0A0MRZ7 120 aa13.06□□□□□ -0.32
USP4-208ENST00000464168 CDIP1Q9H305 208 aa13.06□□□□□ -0.32
USP4-208ENST00000464168 IGLV7-46A0A075B6I9 117 aa13.05□□□□□ -0.32
USP4-208ENST00000464168 LINC01546A6NGU7 62 aa13.05□□□□□ -0.32
USP4-208ENST00000464168 LINC01549A6NIU2 74 aa13.04□□□□□ -0.32
USP4-208ENST00000464168 ATP5LO75964 103 aa13.04□□□□□ -0.32
USP4-208ENST00000464168 PRLHP81277 87 aa13.04□□□□□ -0.32
USP4-208ENST00000464168 MRPL18Q9H0U6 180 aaKnown RBP13.04□□□□□ -0.32
USP4-208ENST00000464168 PMVKQ15126 192 aa13.03□□□□□ -0.32
USP4-208ENST00000464168 TMEM238C9JI98 176 aa13.02□□□□□ -0.33
USP4-208ENST00000464168 VPREB1P12018 145 aa13.02□□□□□ -0.33
USP4-208ENST00000464168 PFN2P35080 140 aa13.02□□□□□ -0.33
USP4-208ENST00000464168 CTAG1AP78358 180 aa13.02□□□□□ -0.33
USP4-208ENST00000464168 FAM19A1Q7Z5A9 133 aa13.02□□□□□ -0.33
USP4-208ENST00000464168 TMEM126AQ9H061 195 aa13.02□□□□□ -0.33
USP4-208ENST00000464168 IGLV5-39A0A0G2JS06 123 aa13□□□□□ -0.33
USP4-208ENST00000464168 H3BRM9 83 aa13□□□□□ -0.33
USP4-208ENST00000464168 SND1-IT1Q9HBX3 110 aa13□□□□□ -0.33
USP4-208ENST00000464168 PLEKHB2Q96CS7 222 aa12.99□□□□□ -0.33
USP4-208ENST00000464168 M0R378 163 aa12.98□□□□□ -0.33
USP4-208ENST00000464168 TRAV9-1A0A075B6T8 112 aa12.97□□□□□ -0.33
USP4-208ENST00000464168 C3orf22Q8N5N4 141 aa12.97□□□□□ -0.33
USP4-208ENST00000464168 IGLC3P0DOY3 106 aa12.96□□□□□ -0.33
USP4-208ENST00000464168 RAB14P61106 215 aa12.96□□□□□ -0.33
USP4-208ENST00000464168 Q8NDZ9 215 aa12.96□□□□□ -0.33
USP4-208ENST00000464168 GNB1LQ9BYB4 327 aa12.96□□□□□ -0.33
USP4-208ENST00000464168 PPDPFQ9H3Y8 114 aa12.96□□□□□ -0.33
USP4-208ENST00000464168 ERG28Q9UKR5 140 aa12.96□□□□□ -0.33
USP4-208ENST00000464168 KRTAP9-6A0A140TA67 174 aa12.95□□□□□ -0.34
USP4-208ENST00000464168 RPL24P83731 157 aaKnown RBP12.95□□□□□ -0.34
USP4-208ENST00000464168 FA2HQ7L5A8 372 aa12.94□□□□□ -0.34
USP4-208ENST00000464168 CBLN2Q8IUK8 224 aa12.94□□□□□ -0.34
USP4-208ENST00000464168 COX17Q14061 63 aa12.93□□□□□ -0.34
USP4-208ENST00000464168 ZNF22P17026 224 aaPredicted RBP12.92□□□□□ -0.34
USP4-208ENST00000464168 ZNF625Q96I27 306 aaPredicted RBP12.91□□□□□ -0.34
USP4-208ENST00000464168 SMCO4Q9NRQ5 59 aa12.91□□□□□ -0.34
USP4-208ENST00000464168 HIGD2AQ9BW72 106 aa12.9□□□□□ -0.34
USP4-208ENST00000464168 NDUFA6P56556 154 aa12.89□□□□□ -0.35
USP4-208ENST00000464168 SPAG11AQ6PDA7 123 aa12.89□□□□□ -0.35
USP4-208ENST00000464168 A0A096LNJ9 63 aa12.88□□□□□ -0.35
USP4-208ENST00000464168 FABP9Q0Z7S8 132 aa12.87□□□□□ -0.35
USP4-208ENST00000464168 SPRR4Q96PI1 79 aa12.87□□□□□ -0.35
USP4-208ENST00000464168 TMEM218A2RU14 115 aa12.86□□□□□ -0.35
USP4-208ENST00000464168 S100PP25815 95 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms