RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	IGHV3-38	A0A0C4DH36	116 aa		6.12	□□□□□ -1.43
SYNE1-215	ENST00000460912	TRAC	P01848	142 aa		6.12	□□□□□ -1.43
SYNE1-215	ENST00000460912	RBM3	P98179	157 aa	Known RBP	6.12	□□□□□ -1.43
SYNE1-215	ENST00000460912	C16orf74	Q96GX8	76 aa		6.12	□□□□□ -1.43
SYNE1-215	ENST00000460912	EGFEM1P	Q0D2K5	195 aa		6.11	□□□□□ -1.43
SYNE1-215	ENST00000460912	KPRP	Q5T749	579 aa	Predicted RBP	6.11	□□□□□ -1.43
SYNE1-215	ENST00000460912	KIR2DL5B	Q8NHK3	375 aa		6.11	□□□□□ -1.43
SYNE1-215	ENST00000460912	MPLKIP	Q8TAP9	179 aa		6.11	□□□□□ -1.43
SYNE1-215	ENST00000460912	WFDC10A	Q9H1F0	79 aa		6.11	□□□□□ -1.43
SYNE1-215	ENST00000460912	LST1	O00453	97 aa		6.11	□□□□□ -1.43
SYNE1-215	ENST00000460912	LINC00308	Q8TCZ7	52 aa		6.11	□□□□□ -1.43
SYNE1-215	ENST00000460912	ICOS	Q9Y6W8	199 aa		6.11	□□□□□ -1.43
SYNE1-215	ENST00000460912	DYNLRB2	Q8TF09	96 aa		6.1	□□□□□ -1.43
SYNE1-215	ENST00000460912	CMC4	P56277	68 aa	Predicted RBP	6.1	□□□□□ -1.43
SYNE1-215	ENST00000460912		X6R8D5	127 aa		6.1	□□□□□ -1.43
SYNE1-215	ENST00000460912	IGHV3OR16-9	A0A0B4J2B5	98 aa		6.1	□□□□□ -1.43
SYNE1-215	ENST00000460912	IGKV3D-7	A0A0C4DH55	119 aa		6.1	□□□□□ -1.43
SYNE1-215	ENST00000460912	LINC01620	Q4KN68	170 aa		6.1	□□□□□ -1.43
SYNE1-215	ENST00000460912	TRBV10-2	A0A0K0K1G8	114 aa		6.09	□□□□□ -1.43
SYNE1-215	ENST00000460912	STH	Q8IWL8	128 aa		6.09	□□□□□ -1.43
SYNE1-215	ENST00000460912	TMEM126A	Q9H061	195 aa		6.09	□□□□□ -1.43
SYNE1-215	ENST00000460912	LOC100131303	A0A0U1RQF7	123 aa		6.09	□□□□□ -1.43
SYNE1-215	ENST00000460912	IGKV2-28	A0A075B6P5	120 aa		6.08	□□□□□ -1.44
SYNE1-215	ENST00000460912	IGKV2D-28	P01615	120 aa		6.08	□□□□□ -1.44
SYNE1-215	ENST00000460912	NHLRC4	P0CG21	123 aa	Predicted RBP	6.08	□□□□□ -1.44
SYNE1-215	ENST00000460912	HTN1	P15515	57 aa		6.07	□□□□□ -1.44
SYNE1-215	ENST00000460912	C1orf195	Q5TG92	126 aa		6.07	□□□□□ -1.44
SYNE1-215	ENST00000460912	NOP10	Q9NPE3	64 aa	Known RBP	6.07	□□□□□ -1.44
SYNE1-215	ENST00000460912	TRGV1	A0A0A0MS02	117 aa		6.07	□□□□□ -1.44
SYNE1-215	ENST00000460912		A0A1B0GX51	115 aa		6.07	□□□□□ -1.44
SYNE1-215	ENST00000460912	UBE2W	Q96B02	151 aa		6.07	□□□□□ -1.44
SYNE1-215	ENST00000460912	IGLV4-60	A0A075B6I1	120 aa		6.06	□□□□□ -1.44
SYNE1-215	ENST00000460912	ATXN8	Q156A1	80 aa		6.06	□□□□□ -1.44
SYNE1-215	ENST00000460912	OBSCN-AS1	Q96MR7	158 aa		6.06	□□□□□ -1.44
SYNE1-215	ENST00000460912	TRBV6-8	A0A0A6YYG3	113 aa		6.06	□□□□□ -1.44
SYNE1-215	ENST00000460912		H3BT86	120 aa		6.06	□□□□□ -1.44
SYNE1-215	ENST00000460912	RPL36A	P83881	106 aa	Known RBP	6.06	□□□□□ -1.44
SYNE1-215	ENST00000460912	LINC01561	Q8N1V8	128 aa		6.06	□□□□□ -1.44
SYNE1-215	ENST00000460912	RPL36AL	Q969Q0	106 aa	Known RBP	6.06	□□□□□ -1.44
SYNE1-215	ENST00000460912		A0A087WZ39	114 aa		6.05	□□□□□ -1.44
SYNE1-215	ENST00000460912	FAM240A	A0A1B0GVK7	77 aa		6.05	□□□□□ -1.44
SYNE1-215	ENST00000460912		A0A1B0GUV1	79 aa		6.05	□□□□□ -1.44
SYNE1-215	ENST00000460912	COX6C	P09669	75 aa		6.05	□□□□□ -1.44
SYNE1-215	ENST00000460912	MDFI	Q99750	246 aa		6.05	□□□□□ -1.44
SYNE1-215	ENST00000460912		Q9H8V8	135 aa		6.05	□□□□□ -1.44
SYNE1-215	ENST00000460912	F8	P00451	2351 aa		6.05	□□□□□ -1.44
SYNE1-215	ENST00000460912	MEGF8	Q7Z7M0	2845 aa		6.05	□□□□□ -1.44
SYNE1-215	ENST00000460912	FRAS1	Q86XX4	4008 aa		6.04	□□□□□ -1.44
SYNE1-215	ENST00000460912	KRTAP10-11	P60412	298 aa		6.04	□□□□□ -1.44
SYNE1-215	ENST00000460912	DAND5	Q8N907	189 aa		6.04	□□□□□ -1.44
SYNE1-215	ENST00000460912	C2orf48	Q96LS8	159 aa		6.04	□□□□□ -1.44
SYNE1-215	ENST00000460912	FAM218A	Q96MZ4	157 aa		6.04	□□□□□ -1.44
SYNE1-215	ENST00000460912	FAM222A	Q5U5X8	452 aa		6.04	□□□□□ -1.44
SYNE1-215	ENST00000460912	COX7A2L	O14548	114 aa		6.03	□□□□□ -1.44
SYNE1-215	ENST00000460912	RPL28	P46779	137 aa	Known RBP	6.03	□□□□□ -1.44
SYNE1-215	ENST00000460912	TMEM243	Q9BU79	118 aa		6.03	□□□□□ -1.44
SYNE1-215	ENST00000460912	KIAA0087	Q14695	138 aa		6.03	□□□□□ -1.44
SYNE1-215	ENST00000460912		Q6Q795	121 aa		6.03	□□□□□ -1.44
SYNE1-215	ENST00000460912	LINC00337	Q8N6G1	96 aa		6.03	□□□□□ -1.44
SYNE1-215	ENST00000460912	CLEC2B	Q92478	149 aa		6.03	□□□□□ -1.44
SYNE1-215	ENST00000460912	LINC00167	Q96N53	147 aa		6.03	□□□□□ -1.44
SYNE1-215	ENST00000460912	PFN2	P35080	140 aa		6.02	□□□□□ -1.45
SYNE1-215	ENST00000460912	C11orf44	Q8N8P7	122 aa		6.02	□□□□□ -1.45
SYNE1-215	ENST00000460912	LRCOL1	A6NCL2	159 aa		6.02	□□□□□ -1.45
SYNE1-215	ENST00000460912	HIVEP2	P31629	2446 aa		6.02	□□□□□ -1.45
SYNE1-215	ENST00000460912	NANOS2	P60321	138 aa	Known RBP	6.02	□□□□□ -1.45
SYNE1-215	ENST00000460912	VPS13D	Q5THJ4	4388 aa		6.01	□□□□□ -1.45
SYNE1-215	ENST00000460912	LINC00959	A0A1B0GUT2	108 aa		6.01	□□□□□ -1.45
SYNE1-215	ENST00000460912	SS18	Q15532	418 aa		6.01	□□□□□ -1.45
SYNE1-215	ENST00000460912	C20orf197	Q8N268	126 aa		6.01	□□□□□ -1.45
SYNE1-215	ENST00000460912	IGHV4-28	A0A0C4DH34	117 aa		6	□□□□□ -1.45
SYNE1-215	ENST00000460912	PF4	P02776	101 aa		6	□□□□□ -1.45
SYNE1-215	ENST00000460912	COX7B2	Q8TF08	81 aa		6	□□□□□ -1.45
SYNE1-215	ENST00000460912	KHDC1L	Q5JSQ8	128 aa		6	□□□□□ -1.45
SYNE1-215	ENST00000460912	C3orf22	Q8N5N4	141 aa		6	□□□□□ -1.45
SYNE1-215	ENST00000460912	STARD9	Q9P2P6	4700 aa		6	□□□□□ -1.45
SYNE1-215	ENST00000460912		A0A087WVE0	104 aa		6	□□□□□ -1.45
SYNE1-215	ENST00000460912		Q8NAQ8	132 aa		5.99	□□□□□ -1.45
SYNE1-215	ENST00000460912	IBA57-AS1	B1ANH7	110 aa		5.99	□□□□□ -1.45
SYNE1-215	ENST00000460912	LINC00336	Q6ZUF6	198 aa		5.99	□□□□□ -1.45
SYNE1-215	ENST00000460912		Q8NDZ9	215 aa		5.99	□□□□□ -1.45
SYNE1-215	ENST00000460912	TRBV7-7	A0A0K0K1E9	115 aa		5.98	□□□□□ -1.45
SYNE1-215	ENST00000460912	SMCR5	Q8TEV8	140 aa		5.98	□□□□□ -1.45
SYNE1-215	ENST00000460912	DNAL4	O96015	105 aa		5.98	□□□□□ -1.45
SYNE1-215	ENST00000460912	C9orf66	Q5T8R8	295 aa		5.98	□□□□□ -1.45
SYNE1-215	ENST00000460912	INAFM2	P0DMQ5	153 aa		5.97	□□□□□ -1.45
SYNE1-215	ENST00000460912	CCL18	P55774	89 aa		5.97	□□□□□ -1.45
SYNE1-215	ENST00000460912		Q8IZM0	81 aa		5.97	□□□□□ -1.45
SYNE1-215	ENST00000460912	TRAV23DV6	A0A075B6W5	121 aa		5.97	□□□□□ -1.45
SYNE1-215	ENST00000460912	UQCRQ	O14949	82 aa		5.97	□□□□□ -1.45
SYNE1-215	ENST00000460912	PLEC	Q15149	4684 aa	Known RBP	5.97	□□□□□ -1.45
SYNE1-215	ENST00000460912	C9orf129	Q5T035	196 aa	Known RBP	5.96	□□□□□ -1.45
SYNE1-215	ENST00000460912	ALMS1	Q8TCU4	4167 aa		5.96	□□□□□ -1.46
SYNE1-215	ENST00000460912	LYRM9	A8MSI8	78 aa		5.96	□□□□□ -1.46
SYNE1-215	ENST00000460912	PRR34	Q9NV39	138 aa		5.96	□□□□□ -1.46
SYNE1-215	ENST00000460912	SPTSSB	Q8NFR3	76 aa		5.96	□□□□□ -1.46
SYNE1-215	ENST00000460912	DAD1	P61803	113 aa		5.95	□□□□□ -1.46
SYNE1-215	ENST00000460912	KRTAP26-1	Q6PEX3	210 aa		5.95	□□□□□ -1.46
SYNE1-215	ENST00000460912	COPS9	Q8WXC6	57 aa		5.95	□□□□□ -1.46
SYNE1-215	ENST00000460912	SNURF	Q9Y675	71 aa		5.95	□□□□□ -1.46

Retrieved 100 of 20,778 RNA–protein pairs in 66 ms