RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 TRAV9-1A0A075B6T8 112 aa13.77□□□□□ -0.21
PTPN4-207ENST00000460162 GEMIN7Q9H840 131 aaKnown RBP13.77□□□□□ -0.21
PTPN4-207ENST00000460162 CDKN2A-AS1Q9UH64 79 aa13.77□□□□□ -0.21
PTPN4-207ENST00000460162 IGLV1-50A0A075B6I6 118 aa13.75□□□□□ -0.21
PTPN4-207ENST00000460162 ADCYAP1P18509 176 aa13.75□□□□□ -0.21
PTPN4-207ENST00000460162 F8VRH5 84 aa13.74□□□□□ -0.21
PTPN4-207ENST00000460162 KRTAP1-4P0C5Y4 121 aa13.74□□□□□ -0.21
PTPN4-207ENST00000460162 CXCL5P42830 114 aa13.74□□□□□ -0.21
PTPN4-207ENST00000460162 UQCC3Q6UW78 93 aa13.74□□□□□ -0.21
PTPN4-207ENST00000460162 KIAA1644Q3SXP7 199 aa13.73□□□□□ -0.21
PTPN4-207ENST00000460162 ERASQ7Z444 233 aa13.73□□□□□ -0.21
PTPN4-207ENST00000460162 LINC00469Q8N7U9 141 aa13.72□□□□□ -0.21
PTPN4-207ENST00000460162 LINC01549A6NIU2 74 aa13.71□□□□□ -0.21
PTPN4-207ENST00000460162 SCGB3A1Q96QR1 104 aa13.71□□□□□ -0.21
PTPN4-207ENST00000460162 XAGE1AQ9HD64 81 aa13.71□□□□□ -0.21
PTPN4-207ENST00000460162 TMEM218A2RU14 115 aa13.7□□□□□ -0.22
PTPN4-207ENST00000460162 NUPR1O60356 82 aa13.7□□□□□ -0.22
PTPN4-207ENST00000460162 SMIM1B2RUZ4 78 aa13.69□□□□□ -0.22
PTPN4-207ENST00000460162 LBHQ53QV2 105 aaPredicted RBP13.69□□□□□ -0.22
PTPN4-207ENST00000460162 C22orf24Q9Y442 160 aa13.69□□□□□ -0.22
PTPN4-207ENST00000460162 TINCRA0A1B0GVN0 87 aa13.68□□□□□ -0.22
PTPN4-207ENST00000460162 LINC01546A6NGU7 62 aa13.68□□□□□ -0.22
PTPN4-207ENST00000460162 RPL13AP40429 203 aaKnown RBP13.68□□□□□ -0.22
PTPN4-207ENST00000460162 GNB1LQ9BYB4 327 aa13.68□□□□□ -0.22
PTPN4-207ENST00000460162 TP73-AS1Q9UF72 201 aa13.68□□□□□ -0.22
PTPN4-207ENST00000460162 IGLV5-45A0A087WSX0 123 aa13.67□□□□□ -0.22
PTPN4-207ENST00000460162 S100PP25815 95 aa13.67□□□□□ -0.22
PTPN4-207ENST00000460162 PDZD11Q5EBL8 140 aa13.67□□□□□ -0.22
PTPN4-207ENST00000460162 ZNF861PO60384 105 aa13.66□□□□□ -0.22
PTPN4-207ENST00000460162 SEC11CQ9BY50 192 aa13.66□□□□□ -0.22
PTPN4-207ENST00000460162 MRPL55Q7Z7F7 128 aaKnown RBP13.65□□□□□ -0.22
PTPN4-207ENST00000460162 COX19Q49B96 90 aa13.64□□□□□ -0.23
PTPN4-207ENST00000460162 COX7B2Q8TF08 81 aa13.64□□□□□ -0.23
PTPN4-207ENST00000460162 CARHSP1Q9Y2V2 147 aaKnown RBP13.64□□□□□ -0.23
PTPN4-207ENST00000460162 CST9LQ9H4G1 147 aa13.62□□□□□ -0.23
PTPN4-207ENST00000460162 PMVKQ15126 192 aa13.61□□□□□ -0.23
PTPN4-207ENST00000460162 LPAP08519 4548 aa13.6□□□□□ -0.23
PTPN4-207ENST00000460162 FA2HQ7L5A8 372 aa13.6□□□□□ -0.23
PTPN4-207ENST00000460162 SMCO4Q9NRQ5 59 aa13.6□□□□□ -0.23
PTPN4-207ENST00000460162 IFITM2Q01629 132 aa13.59□□□□□ -0.23
PTPN4-207ENST00000460162 BCE1O60756 84 aa13.58□□□□□ -0.24
PTPN4-207ENST00000460162 SPINK8P0C7L1 97 aa13.58□□□□□ -0.24
PTPN4-207ENST00000460162 RPL28P46779 137 aaKnown RBP13.58□□□□□ -0.24
PTPN4-207ENST00000460162 MRPL18Q9H0U6 180 aaKnown RBP13.58□□□□□ -0.24
PTPN4-207ENST00000460162 H3BRM9 83 aa13.56□□□□□ -0.24
PTPN4-207ENST00000460162 IGLV5-37A0A075B6J1 123 aa13.55□□□□□ -0.24
PTPN4-207ENST00000460162 FABP9Q0Z7S8 132 aa13.55□□□□□ -0.24
PTPN4-207ENST00000460162 RHEBQ15382 184 aa13.55□□□□□ -0.24
PTPN4-207ENST00000460162 COMMD7Q86VX2 200 aa13.54□□□□□ -0.24
PTPN4-207ENST00000460162 LINC00167Q96N53 147 aa13.54□□□□□ -0.24
PTPN4-207ENST00000460162 ATP5LO75964 103 aa13.53□□□□□ -0.24
PTPN4-207ENST00000460162 IGLC3P0DOY3 106 aa13.52□□□□□ -0.25
PTPN4-207ENST00000460162 C10orf91Q5T1B1 145 aa13.52□□□□□ -0.25
PTPN4-207ENST00000460162 NKAPP1Q8N9T2 125 aa13.52□□□□□ -0.25
PTPN4-207ENST00000460162 RPL37AP8A6NKH3 93 aa13.51□□□□□ -0.25
PTPN4-207ENST00000460162 RAB5BP61020 215 aa13.51□□□□□ -0.25
PTPN4-207ENST00000460162 A0A096LNJ9 63 aa13.5□□□□□ -0.25
PTPN4-207ENST00000460162 IGLV5-39A0A0G2JS06 123 aa13.5□□□□□ -0.25
PTPN4-207ENST00000460162 RPS10P5Q9NQ39 176 aa13.5□□□□□ -0.25
PTPN4-207ENST00000460162 GAGE10A6NGK3 116 aa13.49□□□□□ -0.25
PTPN4-207ENST00000460162 PRR4Q16378 134 aa13.48□□□□□ -0.25
PTPN4-207ENST00000460162 A0A087X002 238 aa13.47□□□□□ -0.25
PTPN4-207ENST00000460162 ZNF22P17026 224 aaPredicted RBP13.47□□□□□ -0.25
PTPN4-207ENST00000460162 C18orf32Q8TCD1 76 aa13.47□□□□□ -0.25
PTPN4-207ENST00000460162 HBDP02042 147 aa13.46□□□□□ -0.25
PTPN4-207ENST00000460162 CRYGAP11844 174 aa13.46□□□□□ -0.25
PTPN4-207ENST00000460162 KRTAP13-1Q8IUC0 172 aa13.46□□□□□ -0.25
PTPN4-207ENST00000460162 UBE2AP49459 152 aa13.45□□□□□ -0.26
PTPN4-207ENST00000460162 NDUFA6P56556 154 aa13.45□□□□□ -0.26
PTPN4-207ENST00000460162 URB1-AS1Q96HZ7 61 aa13.45□□□□□ -0.26
PTPN4-207ENST00000460162 LINC00614P0C842 121 aa13.44□□□□□ -0.26
PTPN4-207ENST00000460162 PFN2P35080 140 aa13.44□□□□□ -0.26
PTPN4-207ENST00000460162 TRAPPC1Q9Y5R8 145 aa13.44□□□□□ -0.26
PTPN4-207ENST00000460162 TYMSOSQ8TAI1 123 aa13.43□□□□□ -0.26
PTPN4-207ENST00000460162 ERG28Q9UKR5 140 aa13.43□□□□□ -0.26
PTPN4-207ENST00000460162 IGKV2-28A0A075B6P5 120 aa13.42□□□□□ -0.26
PTPN4-207ENST00000460162 IGKV2D-28P01615 120 aa13.42□□□□□ -0.26
PTPN4-207ENST00000460162 COX17Q14061 63 aa13.42□□□□□ -0.26
PTPN4-207ENST00000460162 SFTA2Q6UW10 78 aa13.42□□□□□ -0.26
PTPN4-207ENST00000460162 SND1-IT1Q9HBX3 110 aa13.41□□□□□ -0.26
PTPN4-207ENST00000460162 VPREB1P12018 145 aa13.4□□□□□ -0.26
PTPN4-207ENST00000460162 PMCHL1Q16048 86 aa13.4□□□□□ -0.26
PTPN4-207ENST00000460162 SCO1O75880 301 aa13.39□□□□□ -0.27
PTPN4-207ENST00000460162 TSPAN13O95857 204 aa13.39□□□□□ -0.27
PTPN4-207ENST00000460162 C11orf86A6NJI1 115 aa13.38□□□□□ -0.27
PTPN4-207ENST00000460162 RPL24P83731 157 aaKnown RBP13.38□□□□□ -0.27
PTPN4-207ENST00000460162 FAM229BQ4G0N7 80 aa13.38□□□□□ -0.27
PTPN4-207ENST00000460162 BAGE3Q86Y29 109 aa13.37□□□□□ -0.27
PTPN4-207ENST00000460162 TMEM170BQ5T4T1 132 aa13.36□□□□□ -0.27
PTPN4-207ENST00000460162 TMEM126AQ9H061 195 aa13.36□□□□□ -0.27
PTPN4-207ENST00000460162 KRTAP13-2Q52LG2 175 aa13.35□□□□□ -0.27
PTPN4-207ENST00000460162 ZNF625Q96I27 306 aaPredicted RBP13.35□□□□□ -0.27
PTPN4-207ENST00000460162 ANAPC11Q9NYG5 84 aa13.35□□□□□ -0.27
PTPN4-207ENST00000460162 PRLHP81277 87 aa13.34□□□□□ -0.27
PTPN4-207ENST00000460162 APOC3P02656 99 aa13.33□□□□□ -0.28
PTPN4-207ENST00000460162 FAM19A1Q7Z5A9 133 aa13.33□□□□□ -0.28
PTPN4-207ENST00000460162 TMEM238C9JI98 176 aa13.32□□□□□ -0.28
PTPN4-207ENST00000460162 SNAPINO95295 136 aa13.32□□□□□ -0.28
PTPN4-207ENST00000460162 NDUFA5Q16718 116 aa13.32□□□□□ -0.28
PTPN4-207ENST00000460162 M0R378 163 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms