RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 GAGE2EQ4V326 116 aa7.39□□□□□ -1.23
USP40-210ENST00000454354 KRTAP7-1Q8IUC3 87 aa7.39□□□□□ -1.23
USP40-210ENST00000454354 SLC7A5P1Q8MH63 180 aa7.39□□□□□ -1.23
USP40-210ENST00000454354 PACRGQ96M98 296 aaPredicted RBP7.39□□□□□ -1.23
USP40-210ENST00000454354 RPS10P5Q9NQ39 176 aa7.39□□□□□ -1.23
USP40-210ENST00000454354 GAGE2DQ9UEU5 116 aa7.39□□□□□ -1.23
USP40-210ENST00000454354 CDKN2A-AS1Q9UH64 79 aa7.39□□□□□ -1.23
USP40-210ENST00000454354 PRSS2P07478 247 aa7.38□□□□□ -1.23
USP40-210ENST00000454354 KRTAP10-8P60410 259 aa7.38□□□□□ -1.23
USP40-210ENST00000454354 FAM19A5Q7Z5A7 132 aaPredicted RBP7.38□□□□□ -1.23
USP40-210ENST00000454354 SCGB3A1Q96QR1 104 aa7.38□□□□□ -1.23
USP40-210ENST00000454354 MRPL18Q9H0U6 180 aaKnown RBP7.38□□□□□ -1.23
USP40-210ENST00000454354 IGLV5-45A0A087WSX0 123 aa7.37□□□□□ -1.23
USP40-210ENST00000454354 CKS1BP61024 79 aa7.37□□□□□ -1.23
USP40-210ENST00000454354 C1orf137Q5JT78 98 aa7.37□□□□□ -1.23
USP40-210ENST00000454354 C9orf129Q5T035 196 aaKnown RBP7.37□□□□□ -1.23
USP40-210ENST00000454354 GEMIN7Q9H840 131 aaKnown RBP7.37□□□□□ -1.23
USP40-210ENST00000454354 TOMM7Q9P0U1 55 aa7.37□□□□□ -1.23
USP40-210ENST00000454354 TINCRA0A1B0GVN0 87 aa7.36□□□□□ -1.23
USP40-210ENST00000454354 M0QXV9 152 aa7.36□□□□□ -1.23
USP40-210ENST00000454354 FABP9Q0Z7S8 132 aa7.36□□□□□ -1.23
USP40-210ENST00000454354 C6orf226Q5I0X4 101 aa7.36□□□□□ -1.23
USP40-210ENST00000454354 KRTAP11-1Q8IUC1 163 aa7.36□□□□□ -1.23
USP40-210ENST00000454354 SMIM1B2RUZ4 78 aa7.35□□□□□ -1.23
USP40-210ENST00000454354 F8VRH5 84 aa7.35□□□□□ -1.23
USP40-210ENST00000454354 IGLV7-43P04211 117 aa7.35□□□□□ -1.23
USP40-210ENST00000454354 CXCL5P42830 114 aa7.35□□□□□ -1.23
USP40-210ENST00000454354 ODF1Q14990 250 aa7.35□□□□□ -1.23
USP40-210ENST00000454354 FA2HQ7L5A8 372 aa7.35□□□□□ -1.23
USP40-210ENST00000454354 LINC00469Q8N7U9 141 aa7.35□□□□□ -1.23
USP40-210ENST00000454354 LRP2P98164 4655 aa7.34□□□□□ -1.23
USP40-210ENST00000454354 PDZD11Q5EBL8 140 aa7.34□□□□□ -1.23
USP40-210ENST00000454354 CST9LQ9H4G1 147 aa7.34□□□□□ -1.23
USP40-210ENST00000454354 SMCO4Q9NRQ5 59 aa7.34□□□□□ -1.23
USP40-210ENST00000454354 PMVKQ15126 192 aa7.33□□□□□ -1.24
USP40-210ENST00000454354 A0A096LNJ9 63 aa7.32□□□□□ -1.24
USP40-210ENST00000454354 UBE2BP63146 152 aa7.32□□□□□ -1.24
USP40-210ENST00000454354 C18orf32Q8TCD1 76 aa7.32□□□□□ -1.24
USP40-210ENST00000454354 COX7B2Q8TF08 81 aa7.32□□□□□ -1.24
USP40-210ENST00000454354 DIRC1Q969H9 104 aa7.32□□□□□ -1.24
USP40-210ENST00000454354 URB1-AS1Q96HZ7 61 aa7.32□□□□□ -1.24
USP40-210ENST00000454354 H0Y9J4 135 aa7.31□□□□□ -1.24
USP40-210ENST00000454354 TRAPPC1Q9Y5R8 145 aa7.31□□□□□ -1.24
USP40-210ENST00000454354 IGLC3P0DOY3 106 aa7.3□□□□□ -1.24
USP40-210ENST00000454354 XAGE1AQ9HD64 81 aa7.3□□□□□ -1.24
USP40-210ENST00000454354 TP73-AS1Q9UF72 201 aa7.3□□□□□ -1.24
USP40-210ENST00000454354 HBDP02042 147 aa7.29□□□□□ -1.24
USP40-210ENST00000454354 SPINK8P0C7L1 97 aa7.29□□□□□ -1.24
USP40-210ENST00000454354 LINC00614P0C842 121 aa7.29□□□□□ -1.24
USP40-210ENST00000454354 C22orf24Q9Y442 160 aa7.29□□□□□ -1.24
USP40-210ENST00000454354 H3BRM9 83 aa7.28□□□□□ -1.24
USP40-210ENST00000454354 NUPR1O60356 82 aa7.28□□□□□ -1.24
USP40-210ENST00000454354 IGLV5-39A0A0G2JS06 123 aa7.27□□□□□ -1.25
USP40-210ENST00000454354 KRTAP1-4P0C5Y4 121 aa7.27□□□□□ -1.25
USP40-210ENST00000454354 LBHQ53QV2 105 aaPredicted RBP7.27□□□□□ -1.25
USP40-210ENST00000454354 YPEL4Q96NS1 127 aa7.27□□□□□ -1.25
USP40-210ENST00000454354 ZNF22P17026 224 aaPredicted RBP7.26□□□□□ -1.25
USP40-210ENST00000454354 RAB5BP61020 215 aa7.26□□□□□ -1.25
USP40-210ENST00000454354 MRPL55Q7Z7F7 128 aaKnown RBP7.26□□□□□ -1.25
USP40-210ENST00000454354 IGLV5-37A0A075B6J1 123 aa7.25□□□□□ -1.25
USP40-210ENST00000454354 S100A1P23297 94 aa7.25□□□□□ -1.25
USP40-210ENST00000454354 PMCHL1Q16048 86 aa7.25□□□□□ -1.25
USP40-210ENST00000454354 PRR26Q8N8Z3 221 aa7.25□□□□□ -1.25
USP40-210ENST00000454354 IGLV1-50A0A075B6I6 118 aa7.24□□□□□ -1.25
USP40-210ENST00000454354 ZNF861PO60384 105 aa7.24□□□□□ -1.25
USP40-210ENST00000454354 ATP5LO75964 103 aa7.24□□□□□ -1.25
USP40-210ENST00000454354 NDUFA6P56556 154 aa7.24□□□□□ -1.25
USP40-210ENST00000454354 C11orf86A6NJI1 115 aa7.22□□□□□ -1.25
USP40-210ENST00000454354 CBLN2Q8IUK8 224 aa7.22□□□□□ -1.25
USP40-210ENST00000454354 LINC00167Q96N53 147 aa7.22□□□□□ -1.25
USP40-210ENST00000454354 RNF213Q63HN8 5207 aa7.21□□□□□ -1.26
USP40-210ENST00000454354 BCE1O60756 84 aa7.21□□□□□ -1.26
USP40-210ENST00000454354 BAGE3Q86Y29 109 aa7.21□□□□□ -1.26
USP40-210ENST00000454354 CHCHD1Q96BP2 118 aaKnown RBP7.21□□□□□ -1.26
USP40-210ENST00000454354 RPL13AP40429 203 aaKnown RBP7.2□□□□□ -1.26
USP40-210ENST00000454354 COX17Q14061 63 aa7.2□□□□□ -1.26
USP40-210ENST00000454354 SFTA2Q6UW10 78 aa7.2□□□□□ -1.26
USP40-210ENST00000454354 NKAPP1Q8N9T2 125 aa7.2□□□□□ -1.26
USP40-210ENST00000454354 ERG28Q9UKR5 140 aa7.2□□□□□ -1.26
USP40-210ENST00000454354 TRAV12-1A0A0B4J245 112 aa7.19□□□□□ -1.26
USP40-210ENST00000454354 RPL37AP8A6NKH3 93 aa7.19□□□□□ -1.26
USP40-210ENST00000454354 ATP6V1G1O75348 118 aa7.19□□□□□ -1.26
USP40-210ENST00000454354 PFN2P35080 140 aa7.19□□□□□ -1.26
USP40-210ENST00000454354 RPL28P46779 137 aaKnown RBP7.19□□□□□ -1.26
USP40-210ENST00000454354 TMEM170BQ5T4T1 132 aa7.19□□□□□ -1.26
USP40-210ENST00000454354 ZNF625Q96I27 306 aaPredicted RBP7.19□□□□□ -1.26
USP40-210ENST00000454354 CHTOPQ9Y3Y2 248 aaKnown RBP7.19□□□□□ -1.26
USP40-210ENST00000454354 KRTAP13-1Q8IUC0 172 aa7.18□□□□□ -1.26
USP40-210ENST00000454354 IFI27L1Q96BM0 104 aa7.18□□□□□ -1.26
USP40-210ENST00000454354 SND1-IT1Q9HBX3 110 aa7.18□□□□□ -1.26
USP40-210ENST00000454354 LPAP08519 4548 aa7.17□□□□□ -1.26
USP40-210ENST00000454354 TMEM223A0PJW6 202 aa7.17□□□□□ -1.26
USP40-210ENST00000454354 GAGE10A6NGK3 116 aa7.17□□□□□ -1.26
USP40-210ENST00000454354 VPREB1P12018 145 aa7.17□□□□□ -1.26
USP40-210ENST00000454354 COLCA2A8K830 154 aa7.15□□□□□ -1.26
USP40-210ENST00000454354 SCO1O75880 301 aa7.15□□□□□ -1.26
USP40-210ENST00000454354 IGKV2-28A0A075B6P5 120 aa7.14□□□□□ -1.27
USP40-210ENST00000454354 HSBP1O75506 76 aa7.14□□□□□ -1.27
USP40-210ENST00000454354 IGKV2D-28P01615 120 aa7.14□□□□□ -1.27
USP40-210ENST00000454354 TRGC2P03986 189 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms