RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 PLAC8L1A1L4L8 177 aa5.59□□□□□ -1.51
NEDD9-204ENST00000448183 EDN2P20800 178 aa5.59□□□□□ -1.51
NEDD9-204ENST00000448183 IGLV9-49A0A0B4J1Y8 123 aa5.58□□□□□ -1.52
NEDD9-204ENST00000448183 PRR3P79522 188 aaKnown RBP5.58□□□□□ -1.52
NEDD9-204ENST00000448183 PMAIP1Q13794 54 aa5.58□□□□□ -1.52
NEDD9-204ENST00000448183 AGRNO00468 2067 aa5.58□□□□□ -1.52
NEDD9-204ENST00000448183 AVPP01185 164 aa5.58□□□□□ -1.52
NEDD9-204ENST00000448183 C10orf25Q5T742 122 aa5.58□□□□□ -1.52
NEDD9-204ENST00000448183 ZNF843Q8N446 348 aa5.58□□□□□ -1.52
NEDD9-204ENST00000448183 LINC00474Q9P2X8 69 aa5.57□□□□□ -1.52
NEDD9-204ENST00000448183 USP9YO00507 2555 aaPredicted RBP5.57□□□□□ -1.52
NEDD9-204ENST00000448183 BRI3O95415 125 aa5.57□□□□□ -1.52
NEDD9-204ENST00000448183 IGHV4-30-4P0DP06 118 aa5.57□□□□□ -1.52
NEDD9-204ENST00000448183 TRBV7-7A0A0K0K1E9 115 aa5.57□□□□□ -1.52
NEDD9-204ENST00000448183 BEAN1Q3B7T3 259 aa5.57□□□□□ -1.52
NEDD9-204ENST00000448183 CDIP1Q9H305 208 aa5.56□□□□□ -1.52
NEDD9-204ENST00000448183 LINC00846Q9NV44 126 aa5.56□□□□□ -1.52
NEDD9-204ENST00000448183 LINC01547P58512 204 aaPredicted RBP5.56□□□□□ -1.52
NEDD9-204ENST00000448183 MUC4Q99102 2169 aa5.56□□□□□ -1.52
NEDD9-204ENST00000448183 FHL2Q14192 279 aa5.56□□□□□ -1.52
NEDD9-204ENST00000448183 LINC00575Q6W349 94 aa5.56□□□□□ -1.52
NEDD9-204ENST00000448183 LY6G6DO95868 133 aa5.55□□□□□ -1.52
NEDD9-204ENST00000448183 Q6ZVQ6 151 aa5.55□□□□□ -1.52
NEDD9-204ENST00000448183 TMEM254Q8TBM7 123 aa5.55□□□□□ -1.52
NEDD9-204ENST00000448183 IGLV1-51P01701 117 aa5.55□□□□□ -1.52
NEDD9-204ENST00000448183 NANOS2P60321 138 aaKnown RBP5.55□□□□□ -1.52
NEDD9-204ENST00000448183 CDSNQ15517 529 aa5.55□□□□□ -1.52
NEDD9-204ENST00000448183 ESRGQ1W209 222 aa5.55□□□□□ -1.52
NEDD9-204ENST00000448183 WDR87Q6ZQQ6 2873 aa5.55□□□□□ -1.52
NEDD9-204ENST00000448183 A0A1B0GUV1 79 aa5.54□□□□□ -1.52
NEDD9-204ENST00000448183 C6orf223Q8N319 242 aa5.54□□□□□ -1.52
NEDD9-204ENST00000448183 TRBV7-6A0A0J9YX20 115 aa5.54□□□□□ -1.52
NEDD9-204ENST00000448183 REG3GQ6UW15 175 aa5.54□□□□□ -1.52
NEDD9-204ENST00000448183 M0R2N4 97 aa5.53□□□□□ -1.52
NEDD9-204ENST00000448183 Q6ZSN1 163 aa5.53□□□□□ -1.52
NEDD9-204ENST00000448183 LINC00337Q8N6G1 96 aa5.53□□□□□ -1.52
NEDD9-204ENST00000448183 CEP192Q8TEP8 1941 aa5.53□□□□□ -1.52
NEDD9-204ENST00000448183 LINC01561Q8N1V8 128 aa5.53□□□□□ -1.52
NEDD9-204ENST00000448183 KIF25-AS1Q9Y6Z4 181 aa5.53□□□□□ -1.52
NEDD9-204ENST00000448183 PSPHP1O15172 72 aa5.52□□□□□ -1.53
NEDD9-204ENST00000448183 A0A087WSZ3 146 aa5.52□□□□□ -1.53
NEDD9-204ENST00000448183 F8WDY8 70 aa5.52□□□□□ -1.53
NEDD9-204ENST00000448183 OXLD1Q5BKU9 147 aa5.52□□□□□ -1.53
NEDD9-204ENST00000448183 C2orf48Q96LS8 159 aa5.51□□□□□ -1.53
NEDD9-204ENST00000448183 LRP4O75096 1905 aa5.51□□□□□ -1.53
NEDD9-204ENST00000448183 PCOTHQ58A44 107 aa5.51□□□□□ -1.53
NEDD9-204ENST00000448183 COL5A1P20908 1838 aaPredicted RBP5.51□□□□□ -1.53
NEDD9-204ENST00000448183 IGHV6-1A0A0B4J1U7 121 aa5.51□□□□□ -1.53
NEDD9-204ENST00000448183 LINC01546A6NGU7 62 aa5.51□□□□□ -1.53
NEDD9-204ENST00000448183 H0Y9P7 68 aa5.51□□□□□ -1.53
NEDD9-204ENST00000448183 CXCL6P80162 114 aa5.51□□□□□ -1.53
NEDD9-204ENST00000448183 IGLV5-39A0A0G2JS06 123 aa5.5□□□□□ -1.53
NEDD9-204ENST00000448183 Q9BRP9 147 aa5.5□□□□□ -1.53
NEDD9-204ENST00000448183 LRRK2Q5S007 2527 aa5.5□□□□□ -1.53
NEDD9-204ENST00000448183 A8MTW9 85 aa5.5□□□□□ -1.53
NEDD9-204ENST00000448183 hDV103S1A0JD37 113 aa5.49□□□□□ -1.53
NEDD9-204ENST00000448183 HCG22E2RYF7 251 aa5.49□□□□□ -1.53
NEDD9-204ENST00000448183 SMCPP49901 116 aaPredicted RBP5.49□□□□□ -1.53
NEDD9-204ENST00000448183 Q6ZTC4 211 aa5.49□□□□□ -1.53
NEDD9-204ENST00000448183 EXPH5Q8NEV8 1989 aa5.49□□□□□ -1.53
NEDD9-204ENST00000448183 CRYGAP11844 174 aa5.49□□□□□ -1.53
NEDD9-204ENST00000448183 F8P00451 2351 aa5.49□□□□□ -1.53
NEDD9-204ENST00000448183 A0A1W2PPR1 153 aa5.48□□□□□ -1.53
NEDD9-204ENST00000448183 CIRBP-AS1Q8TBR5 109 aa5.48□□□□□ -1.53
NEDD9-204ENST00000448183 RETNQ9HD89 108 aa5.48□□□□□ -1.53
NEDD9-204ENST00000448183 PTPRSQ13332 1948 aa5.48□□□□□ -1.53
NEDD9-204ENST00000448183 CEP295Q9C0D2 2601 aa5.48□□□□□ -1.53
NEDD9-204ENST00000448183 PRO0461Q9UI25 63 aa5.48□□□□□ -1.53
NEDD9-204ENST00000448183 PRO0628Q9UI54 55 aa5.47□□□□□ -1.53
NEDD9-204ENST00000448183 IGHV3OR16-9A0A0B4J2B5 98 aa5.47□□□□□ -1.53
NEDD9-204ENST00000448183 LINC00315P59091 139 aa5.47□□□□□ -1.53
NEDD9-204ENST00000448183 DEFB116Q30KQ4 102 aa5.47□□□□□ -1.53
NEDD9-204ENST00000448183 BCE1O60756 84 aa5.47□□□□□ -1.53
NEDD9-204ENST00000448183 LY6G6CO95867 125 aa5.47□□□□□ -1.53
NEDD9-204ENST00000448183 LYPD5Q6UWN5 251 aa5.47□□□□□ -1.53
NEDD9-204ENST00000448183 Q6ZRU5 148 aa5.47□□□□□ -1.53
NEDD9-204ENST00000448183 Q8N2B8 174 aa5.47□□□□□ -1.53
NEDD9-204ENST00000448183 ANKRD11Q6UB99 2663 aaPredicted RBP5.46□□□□□ -1.54
NEDD9-204ENST00000448183 RAI1Q7Z5J4 1906 aaPredicted RBP5.46□□□□□ -1.54
NEDD9-204ENST00000448183 C11orf72Q8NBR9 251 aa5.46□□□□□ -1.54
NEDD9-204ENST00000448183 MTORP42345 2549 aa5.45□□□□□ -1.54
NEDD9-204ENST00000448183 CPAMD8Q8IZJ3 1885 aa5.45□□□□□ -1.54
NEDD9-204ENST00000448183 KRTAP10-9P60411 292 aa5.45□□□□□ -1.54
NEDD9-204ENST00000448183 SPATA3Q8NHX4 192 aa5.45□□□□□ -1.54
NEDD9-204ENST00000448183 C16orf95Q9H693 158 aa5.45□□□□□ -1.54
NEDD9-204ENST00000448183 ADAMTS20P59510 1910 aa5.45□□□□□ -1.54
NEDD9-204ENST00000448183 LIMD2Q9BT23 127 aa5.45□□□□□ -1.54
NEDD9-204ENST00000448183 RPS28P62857 69 aaKnown RBP5.44□□□□□ -1.54
NEDD9-204ENST00000448183 C1orf64Q8NEQ6 169 aa5.44□□□□□ -1.54
NEDD9-204ENST00000448183 NUPR2A6NF83 97 aa5.44□□□□□ -1.54
NEDD9-204ENST00000448183 LINC01556Q5JQF7 62 aa5.44□□□□□ -1.54
NEDD9-204ENST00000448183 IGLV5-45A0A087WSX0 123 aa5.44□□□□□ -1.54
NEDD9-204ENST00000448183 SBSPONQ8IVN8 264 aa5.44□□□□□ -1.54
NEDD9-204ENST00000448183 SMIM29Q86T20 159 aa5.43□□□□□ -1.54
NEDD9-204ENST00000448183 TET2Q6N021 2002 aaPredicted RBP5.43□□□□□ -1.54
NEDD9-204ENST00000448183 PLA2G2AP14555 144 aa5.43□□□□□ -1.54
NEDD9-204ENST00000448183 PRLHP81277 87 aa5.43□□□□□ -1.54
NEDD9-204ENST00000448183 SPINK1P00995 79 aa5.43□□□□□ -1.54
NEDD9-204ENST00000448183 KIAA0087Q14695 138 aa5.43□□□□□ -1.54
NEDD9-204ENST00000448183 FAM19A4Q96LR4 140 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms