RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 ETDBQ3ZM63 59 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 SPAG11AQ6PDA7 123 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 SPACA4Q8TDM5 124 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 ALPK2Q86TB3 2170 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 MED13LQ71F56 2210 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 LOC285095A0A1B0GVY8 99 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 ZNF815PA8K554 130 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 RPL37AP61513 92 aaKnown RBP1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 TDRG1Q3Y452 100 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 LINC00322Q6ZN03 302 aaPredicted RBP1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 V9GYH0 126 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 MED13Q9UHV7 2174 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 PDCD5O14737 125 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 KRTAP2-3P0C7H8 128 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 IL9P15248 144 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 UBE2D1P51668 147 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 ODF3Q96PU9 254 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 KRTAP2-4Q9BYR9 128 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 LOC285556D6RIA3 1793 aa1.27□□□□□ -2.21
CCDC88A-208ENST00000444458 LOC101927531A0A1B0GV80 90 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 PDE6GP18545 87 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 ELOF1P60002 83 aaKnown RBP1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 R4GMQ9 66 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 ANK1P16157 1881 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 PLXNA1Q9UIW2 1896 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 PIEZO2Q9H5I5 2752 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 DOCK1Q14185 1865 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 IGKV3-7A0A075B6H7 116 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 MRPS14O60783 128 aaKnown RBP1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 IGHV3-30P01768 117 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 IGHV3-30-5P0DP03 117 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 ZNF56Q15929 161 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 COX7B2Q8TF08 81 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 V9GYV3 84 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 EML5Q05BV3 1969 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 TRBV6-7A0A0A0MS04 114 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 IGKV4-1P06312 121 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 ESPL1Q14674 2120 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 FAM167A-AS1Q96KT0 104 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 ADAMTS9Q9P2N4 1935 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 COL4A1P02462 1669 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 IGLV3-1P01715 115 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 PSMG4Q5JS54 123 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 HCP5Q6MZN7 132 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 KRTAP1-5Q9BYS1 174 aa1.26□□□□□ -2.21
CCDC88A-208ENST00000444458 PLXNA2O75051 1894 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 BIRC6Q9NR09 4857 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 J3QRE1 110 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 RYR3Q15413 4870 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 ZNF236Q9UL36 1845 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 CTXND1A0A1B0GTU2 59 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 A0A1W2PPM0 123 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 SPTBP11277 2137 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 LENEPQ9Y5L5 61 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 ARL2-SNX15V9GYD0 113 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 URB1O60287 2271 aaKnown RBP1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 ZGRF1Q86YA3 2104 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 SHROOM3Q8TF72 1996 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 TRAV22A0A0B4J277 110 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 H3BUT2 72 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 FXYD4P59646 89 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 SNRPFP62306 86 aaKnown RBP1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 RYR2Q92736 4967 aa1.25□□□□□ -2.21
CCDC88A-208ENST00000444458 PI4KAP42356 2102 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 AMELYQ99218 206 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 PCNX2A6NKB5 2137 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 SIP14410 1827 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 IGKV2-29A2NJV5 120 aaPredicted RBP1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 RNASE3P12724 160 aaKnown RBP1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 NDUFA4L2Q9NRX3 87 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 ARFGEF3Q5TH69 2177 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 WNK2Q9Y3S1 2297 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 KIAA1549LQ6ZVL6 1849 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 CEP350Q5VT06 3117 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 TMEM14DPA8MWL7 114 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 ACYP1P07311 99 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 NMSQ5H8A3 153 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 KNL1Q8NG31 2342 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 ZSWIM8A7E2V4 1837 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 PTPRFP10586 1907 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 PKHD1P08F94 4074 aa1.24□□□□□ -2.21
CCDC88A-208ENST00000444458 UBE2D3P61077 147 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 UBE2D2P62837 147 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 WFDC2Q14508 124 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 GDF5OSQ5U4N7 250 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 Q86TA4 180 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 HIGD1BQ9P298 99 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 PRO0461Q9UI25 63 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 EP400Q96L91 3159 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 PKHD1L1Q86WI1 4243 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 PRRC2BQ5JSZ5 2229 aaKnown RBP1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 HMGN4O00479 90 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 CCL3L1P16619 93 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 KRTAP10-6P60371 365 aaPredicted RBP1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 A0A1B0GWA3 101 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 FXYD3Q14802 87 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 XAF1Q6GPH4 301 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 BRD3OSQ6XYD6 125 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 MYO18AQ92614 2054 aaKnown RBP1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 PCDH15Q96QU1 1955 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms