RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 TMEM243Q9BU79 118 aa6.64□□□□□ -1.35
CUX1-206ENST00000437600 Q6Q795 121 aa6.64□□□□□ -1.35
CUX1-206ENST00000437600 SOSTDC1Q6X4U4 206 aa6.64□□□□□ -1.35
CUX1-206ENST00000437600 ATXN8Q156A1 80 aa6.63□□□□□ -1.35
CUX1-206ENST00000437600 UBE2WQ96B02 151 aa6.63□□□□□ -1.35
CUX1-206ENST00000437600 MIAQ16674 131 aa6.63□□□□□ -1.35
CUX1-206ENST00000437600 TRBV10-1A0A0K0K1A3 114 aa6.63□□□□□ -1.35
CUX1-206ENST00000437600 GYPEP15421 78 aa6.63□□□□□ -1.35
CUX1-206ENST00000437600 HERVK_113P63121 156 aa6.63□□□□□ -1.35
CUX1-206ENST00000437600 PKIGQ9Y2B9 76 aa6.63□□□□□ -1.35
CUX1-206ENST00000437600 TIRAPP58753 221 aa6.62□□□□□ -1.35
CUX1-206ENST00000437600 HTN3P15516 51 aa6.62□□□□□ -1.35
CUX1-206ENST00000437600 PFN2P35080 140 aa6.62□□□□□ -1.35
CUX1-206ENST00000437600 RPL13AP40429 203 aaKnown RBP6.62□□□□□ -1.35
CUX1-206ENST00000437600 C2orf82Q6UX34 121 aa6.62□□□□□ -1.35
CUX1-206ENST00000437600 IGLV10-54A0A075B6I4 117 aa6.61□□□□□ -1.35
CUX1-206ENST00000437600 TRBV6-8A0A0A6YYG3 113 aa6.61□□□□□ -1.35
CUX1-206ENST00000437600 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.61□□□□□ -1.35
CUX1-206ENST00000437600 A0A0B4J2C4 111 aa6.61□□□□□ -1.35
CUX1-206ENST00000437600 XCL1P47992 114 aa6.61□□□□□ -1.35
CUX1-206ENST00000437600 KRTAP10-11P60412 298 aa6.61□□□□□ -1.35
CUX1-206ENST00000437600 RPS28P62857 69 aaKnown RBP6.61□□□□□ -1.35
CUX1-206ENST00000437600 LINC00308Q8TCZ7 52 aa6.61□□□□□ -1.35
CUX1-206ENST00000437600 PRO0628Q9UI54 55 aa6.61□□□□□ -1.35
CUX1-206ENST00000437600 X6R8D5 127 aa6.61□□□□□ -1.35
CUX1-206ENST00000437600 FAM222AQ5U5X8 452 aa6.61□□□□□ -1.35
CUX1-206ENST00000437600 ICOSQ9Y6W8 199 aa6.61□□□□□ -1.35
CUX1-206ENST00000437600 TRBV10-2A0A0K0K1G8 114 aa6.6□□□□□ -1.35
CUX1-206ENST00000437600 TRBV6-4A0A1B0GX49 114 aa6.6□□□□□ -1.35
CUX1-206ENST00000437600 MEGF8Q7Z7M0 2845 aa6.6□□□□□ -1.35
CUX1-206ENST00000437600 IGLV5-45A0A087WSX0 123 aa6.6□□□□□ -1.35
CUX1-206ENST00000437600 NDUFA1O15239 70 aa6.6□□□□□ -1.35
CUX1-206ENST00000437600 IGHV4-30-4P0DP06 118 aa6.6□□□□□ -1.35
CUX1-206ENST00000437600 MALP21145 153 aa6.6□□□□□ -1.35
CUX1-206ENST00000437600 CIRBPQ14011 172 aaKnown RBP6.6□□□□□ -1.35
CUX1-206ENST00000437600 OVOL2Q9BRP0 275 aa6.6□□□□□ -1.35
CUX1-206ENST00000437600 KLK5Q9Y337 293 aaPredicted RBP6.6□□□□□ -1.35
CUX1-206ENST00000437600 WFDC9Q8NEX5 89 aa6.6□□□□□ -1.35
CUX1-206ENST00000437600 IGLV5-39A0A0G2JS06 123 aa6.59□□□□□ -1.35
CUX1-206ENST00000437600 C9orf153Q5TBE3 101 aa6.59□□□□□ -1.35
CUX1-206ENST00000437600 SPANXDQ9BXN6 97 aa6.59□□□□□ -1.35
CUX1-206ENST00000437600 SPANXCQ9NY87 97 aa6.59□□□□□ -1.35
CUX1-206ENST00000437600 FAM236AA0A1B0GUQ0 79 aa6.58□□□□□ -1.36
CUX1-206ENST00000437600 FAM236BA0A1B0GV22 79 aa6.58□□□□□ -1.36
CUX1-206ENST00000437600 RETNQ9HD89 108 aa6.58□□□□□ -1.36
CUX1-206ENST00000437600 TGP01266 2768 aa6.58□□□□□ -1.36
CUX1-206ENST00000437600 LINC00158P58513 81 aa6.58□□□□□ -1.36
CUX1-206ENST00000437600 MIR7-3HGQ8N6C7 128 aa6.58□□□□□ -1.36
CUX1-206ENST00000437600 CELA1Q9UNI1 258 aa6.58□□□□□ -1.36
CUX1-206ENST00000437600 STAB2Q8WWQ8 2551 aa6.58□□□□□ -1.36
CUX1-206ENST00000437600 IGHV4-28A0A0C4DH34 117 aa6.58□□□□□ -1.36
CUX1-206ENST00000437600 H7C423 109 aa6.58□□□□□ -1.36
CUX1-206ENST00000437600 LINC00526Q96FQ7 95 aa6.57□□□□□ -1.36
CUX1-206ENST00000437600 PRKDCP78527 4128 aaKnown RBP6.57□□□□□ -1.36
CUX1-206ENST00000437600 TRBV30A0A0K0K1B3 111 aa6.57□□□□□ -1.36
CUX1-206ENST00000437600 PRR3P79522 188 aaKnown RBP6.56□□□□□ -1.36
CUX1-206ENST00000437600 Q5XG85 94 aa6.56□□□□□ -1.36
CUX1-206ENST00000437600 IGHV3OR16-9A0A0B4J2B5 98 aa6.56□□□□□ -1.36
CUX1-206ENST00000437600 PAX4O43316 350 aa6.56□□□□□ -1.36
CUX1-206ENST00000437600 LINC00269Q8N2A0 174 aa6.56□□□□□ -1.36
CUX1-206ENST00000437600 COX7B2Q8TF08 81 aa6.56□□□□□ -1.36
CUX1-206ENST00000437600 COX6CP09669 75 aa6.55□□□□□ -1.36
CUX1-206ENST00000437600 LINC00959A0A1B0GUT2 108 aa6.55□□□□□ -1.36
CUX1-206ENST00000437600 APOC4P55056 127 aa6.55□□□□□ -1.36
CUX1-206ENST00000437600 C6orf226Q5I0X4 101 aa6.55□□□□□ -1.36
CUX1-206ENST00000437600 Q9HAA7 133 aa6.55□□□□□ -1.36
CUX1-206ENST00000437600 TENM2Q9NT68 2774 aa6.54□□□□□ -1.36
CUX1-206ENST00000437600 C9orf116Q5BN46 136 aaPredicted RBP6.54□□□□□ -1.36
CUX1-206ENST00000437600 H3BT86 120 aa6.54□□□□□ -1.36
CUX1-206ENST00000437600 FAM218AQ96MZ4 157 aa6.54□□□□□ -1.36
CUX1-206ENST00000437600 CSMD3Q7Z407 3707 aa6.54□□□□□ -1.36
CUX1-206ENST00000437600 TRBV7-7A0A0K0K1E9 115 aa6.53□□□□□ -1.36
CUX1-206ENST00000437600 C3orf22Q8N5N4 141 aa6.53□□□□□ -1.36
CUX1-206ENST00000437600 LINC00337Q8N6G1 96 aa6.53□□□□□ -1.36
CUX1-206ENST00000437600 PRO0255Q9UI72 69 aa6.53□□□□□ -1.36
CUX1-206ENST00000437600 ANGP03950 147 aaKnown RBP6.53□□□□□ -1.36
CUX1-206ENST00000437600 ATP5G1P05496 136 aa6.53□□□□□ -1.36
CUX1-206ENST00000437600 DAD1P61803 113 aa6.53□□□□□ -1.36
CUX1-206ENST00000437600 Q8NAQ8 132 aa6.53□□□□□ -1.36
CUX1-206ENST00000437600 LINC01600Q96MT4 127 aa6.53□□□□□ -1.36
CUX1-206ENST00000437600 HUWE1Q7Z6Z7 4374 aaKnown RBP6.53□□□□□ -1.36
CUX1-206ENST00000437600 LYSTQ99698 3801 aa6.53□□□□□ -1.36
CUX1-206ENST00000437600 FAM236DA0A1B0GTK5 79 aa6.52□□□□□ -1.36
CUX1-206ENST00000437600 FAM236CP0DP71 79 aa6.52□□□□□ -1.36
CUX1-206ENST00000437600 LINC00336Q6ZUF6 198 aa6.52□□□□□ -1.36
CUX1-206ENST00000437600 SND1-IT1Q9HBX3 110 aa6.52□□□□□ -1.36
CUX1-206ENST00000437600 IGKV2-28A0A075B6P5 120 aa6.52□□□□□ -1.37
CUX1-206ENST00000437600 FAM240AA0A1B0GVK7 77 aa6.52□□□□□ -1.37
CUX1-206ENST00000437600 IGKV2D-28P01615 120 aa6.52□□□□□ -1.37
CUX1-206ENST00000437600 TIMM17BO60830 172 aa6.52□□□□□ -1.37
CUX1-206ENST00000437600 OXTP01178 125 aa6.52□□□□□ -1.37
CUX1-206ENST00000437600 CCL18P55774 89 aa6.52□□□□□ -1.37
CUX1-206ENST00000437600 ZNF561-AS1K7EIQ3 104 aa6.51□□□□□ -1.37
CUX1-206ENST00000437600 LST1O00453 97 aa6.51□□□□□ -1.37
CUX1-206ENST00000437600 C1orf195Q5TG92 126 aa6.51□□□□□ -1.37
CUX1-206ENST00000437600 A0A087WZ39 114 aa6.5□□□□□ -1.37
CUX1-206ENST00000437600 GAGE2AQ6NT46 116 aa6.5□□□□□ -1.37
CUX1-206ENST00000437600 FAM19A3Q7Z5A8 133 aa6.5□□□□□ -1.37
CUX1-206ENST00000437600 DNAH9Q9NYC9 4486 aa6.5□□□□□ -1.37
CUX1-206ENST00000437600 UQCRQO14949 82 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms