RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 SNAPINO95295 136 aa11.71□□□□□ -0.53
SF3A1-202ENST00000411423 ODF1Q14990 250 aa11.71□□□□□ -0.53
SF3A1-202ENST00000411423 NDUFA5Q16718 116 aa11.71□□□□□ -0.53
SF3A1-202ENST00000411423 SPINK6Q6UWN8 80 aa11.71□□□□□ -0.53
SF3A1-202ENST00000411423 FA2HQ7L5A8 372 aa11.71□□□□□ -0.53
SF3A1-202ENST00000411423 FAM19A5Q7Z5A7 132 aaPredicted RBP11.71□□□□□ -0.53
SF3A1-202ENST00000411423 Q8IZM0 81 aa11.71□□□□□ -0.53
SF3A1-202ENST00000411423 NDUFC2-KCTD14E9PQ53 114 aa11.7□□□□□ -0.54
SF3A1-202ENST00000411423 SERTAD4-AS1Q5TG53 156 aa11.7□□□□□ -0.54
SF3A1-202ENST00000411423 C18orf32Q8TCD1 76 aa11.7□□□□□ -0.54
SF3A1-202ENST00000411423 LINC01600Q96MT4 127 aa11.7□□□□□ -0.54
SF3A1-202ENST00000411423 CST9LQ9H4G1 147 aa11.7□□□□□ -0.54
SF3A1-202ENST00000411423 GEMIN7Q9H840 131 aaKnown RBP11.7□□□□□ -0.54
SF3A1-202ENST00000411423 TRAPPC1Q9Y5R8 145 aa11.7□□□□□ -0.54
SF3A1-202ENST00000411423 SMIM1B2RUZ4 78 aa11.69□□□□□ -0.54
SF3A1-202ENST00000411423 PRSS2P07478 247 aa11.69□□□□□ -0.54
SF3A1-202ENST00000411423 SEC11AP67812 179 aa11.69□□□□□ -0.54
SF3A1-202ENST00000411423 PACRGQ96M98 296 aaPredicted RBP11.69□□□□□ -0.54
SF3A1-202ENST00000411423 YPEL4Q96NS1 127 aa11.69□□□□□ -0.54
SF3A1-202ENST00000411423 IGLV5-45A0A087WSX0 123 aa11.68□□□□□ -0.54
SF3A1-202ENST00000411423 TINCRA0A1B0GVN0 87 aa11.68□□□□□ -0.54
SF3A1-202ENST00000411423 C6orf226Q5I0X4 101 aa11.68□□□□□ -0.54
SF3A1-202ENST00000411423 LINC00469Q8N7U9 141 aa11.68□□□□□ -0.54
SF3A1-202ENST00000411423 SMCO4Q9NRQ5 59 aa11.67□□□□□ -0.54
SF3A1-202ENST00000411423 CKS1BP61024 79 aa11.66□□□□□ -0.54
SF3A1-202ENST00000411423 PMVKQ15126 192 aa11.66□□□□□ -0.54
SF3A1-202ENST00000411423 PMCHL1Q16048 86 aa11.66□□□□□ -0.54
SF3A1-202ENST00000411423 C1orf137Q5JT78 98 aa11.66□□□□□ -0.54
SF3A1-202ENST00000411423 LINC01549A6NIU2 74 aa11.64□□□□□ -0.55
SF3A1-202ENST00000411423 M0QXV9 152 aa11.64□□□□□ -0.55
SF3A1-202ENST00000411423 SPINK8P0C7L1 97 aa11.64□□□□□ -0.55
SF3A1-202ENST00000411423 LINC00614P0C842 121 aa11.64□□□□□ -0.55
SF3A1-202ENST00000411423 UBR4Q5T4S7 5183 aa11.63□□□□□ -0.55
SF3A1-202ENST00000411423 F8VRH5 84 aa11.63□□□□□ -0.55
SF3A1-202ENST00000411423 KRTAP10-8P60410 259 aa11.63□□□□□ -0.55
SF3A1-202ENST00000411423 PDZD11Q5EBL8 140 aa11.62□□□□□ -0.55
SF3A1-202ENST00000411423 COX7B2Q8TF08 81 aa11.62□□□□□ -0.55
SF3A1-202ENST00000411423 XAGE1AQ9HD64 81 aa11.62□□□□□ -0.55
SF3A1-202ENST00000411423 IGLV7-43P04211 117 aa11.61□□□□□ -0.55
SF3A1-202ENST00000411423 PLA2G2DQ9UNK4 145 aa11.61□□□□□ -0.55
SF3A1-202ENST00000411423 IGLC3P0DOY3 106 aa11.6□□□□□ -0.55
SF3A1-202ENST00000411423 REG3GQ6UW15 175 aa11.6□□□□□ -0.55
SF3A1-202ENST00000411423 SLC7A5P1Q8MH63 180 aa11.6□□□□□ -0.55
SF3A1-202ENST00000411423 HBDP02042 147 aa11.59□□□□□ -0.55
SF3A1-202ENST00000411423 ZNF22P17026 224 aaPredicted RBP11.58□□□□□ -0.56
SF3A1-202ENST00000411423 CXCL5P42830 114 aa11.58□□□□□ -0.56
SF3A1-202ENST00000411423 NDUFA6P56556 154 aa11.58□□□□□ -0.56
SF3A1-202ENST00000411423 CBLN2Q8IUK8 224 aa11.58□□□□□ -0.56
SF3A1-202ENST00000411423 C22orf24Q9Y442 160 aa11.57□□□□□ -0.56
SF3A1-202ENST00000411423 UBE2BP63146 152 aa11.56□□□□□ -0.56
SF3A1-202ENST00000411423 IGLV5-39A0A0G2JS06 123 aa11.55□□□□□ -0.56
SF3A1-202ENST00000411423 C11orf86A6NJI1 115 aa11.54□□□□□ -0.56
SF3A1-202ENST00000411423 RAB5BP61020 215 aa11.53□□□□□ -0.56
SF3A1-202ENST00000411423 H0Y9J4 135 aa11.52□□□□□ -0.57
SF3A1-202ENST00000411423 H3BRM9 83 aa11.52□□□□□ -0.57
SF3A1-202ENST00000411423 BAGE3Q86Y29 109 aa11.52□□□□□ -0.57
SF3A1-202ENST00000411423 ATP5LO75964 103 aa11.51□□□□□ -0.57
SF3A1-202ENST00000411423 LRP2P98164 4655 aa11.5□□□□□ -0.57
SF3A1-202ENST00000411423 KRTAP1-4P0C5Y4 121 aa11.5□□□□□ -0.57
SF3A1-202ENST00000411423 DIRC1Q969H9 104 aa11.5□□□□□ -0.57
SF3A1-202ENST00000411423 MRPL55Q7Z7F7 128 aaKnown RBP11.48□□□□□ -0.57
SF3A1-202ENST00000411423 PRR26Q8N8Z3 221 aa11.48□□□□□ -0.57
SF3A1-202ENST00000411423 CHCHD1Q96BP2 118 aaKnown RBP11.48□□□□□ -0.57
SF3A1-202ENST00000411423 TP73-AS1Q9UF72 201 aa11.48□□□□□ -0.57
SF3A1-202ENST00000411423 TRGC2P03986 189 aa11.47□□□□□ -0.57
SF3A1-202ENST00000411423 LINC00310P59036 64 aa11.47□□□□□ -0.57
SF3A1-202ENST00000411423 LINC00167Q96N53 147 aa11.47□□□□□ -0.57
SF3A1-202ENST00000411423 SCO1O75880 301 aa11.46□□□□□ -0.57
SF3A1-202ENST00000411423 PFN2P35080 140 aa11.46□□□□□ -0.57
SF3A1-202ENST00000411423 TMEM170BQ5T4T1 132 aa11.46□□□□□ -0.57
SF3A1-202ENST00000411423 FAM19A2Q8N3H0 131 aa11.46□□□□□ -0.57
SF3A1-202ENST00000411423 IFI27L1Q96BM0 104 aa11.46□□□□□ -0.57
SF3A1-202ENST00000411423 CHTOPQ9Y3Y2 248 aaKnown RBP11.46□□□□□ -0.57
SF3A1-202ENST00000411423 RPL37AP8A6NKH3 93 aa11.45□□□□□ -0.58
SF3A1-202ENST00000411423 LBHQ53QV2 105 aaPredicted RBP11.45□□□□□ -0.58
SF3A1-202ENST00000411423 ZNF625Q96I27 306 aaPredicted RBP11.45□□□□□ -0.58
SF3A1-202ENST00000411423 IGLV5-37A0A075B6J1 123 aa11.44□□□□□ -0.58
SF3A1-202ENST00000411423 GAGE10A6NGK3 116 aa11.44□□□□□ -0.58
SF3A1-202ENST00000411423 Q8NDZ9 215 aa11.44□□□□□ -0.58
SF3A1-202ENST00000411423 ERG28Q9UKR5 140 aa11.44□□□□□ -0.58
SF3A1-202ENST00000411423 TRAV12-1A0A0B4J245 112 aa11.43□□□□□ -0.58
SF3A1-202ENST00000411423 NUPR1O60356 82 aa11.43□□□□□ -0.58
SF3A1-202ENST00000411423 ZNF861PO60384 105 aa11.43□□□□□ -0.58
SF3A1-202ENST00000411423 TMEM223A0PJW6 202 aa11.42□□□□□ -0.58
SF3A1-202ENST00000411423 SND1-IT1Q9HBX3 110 aa11.42□□□□□ -0.58
SF3A1-202ENST00000411423 COLCA2A8K830 154 aa11.41□□□□□ -0.58
SF3A1-202ENST00000411423 HSBP1O75506 76 aa11.4□□□□□ -0.58
SF3A1-202ENST00000411423 VPREB1P12018 145 aa11.4□□□□□ -0.58
SF3A1-202ENST00000411423 BCE1O60756 84 aa11.39□□□□□ -0.59
SF3A1-202ENST00000411423 SERF1AO75920 110 aa11.39□□□□□ -0.59
SF3A1-202ENST00000411423 COX17Q14061 63 aa11.36□□□□□ -0.59
SF3A1-202ENST00000411423 KRTAP13-1Q8IUC0 172 aa11.36□□□□□ -0.59
SF3A1-202ENST00000411423 NKAPP1Q8N9T2 125 aa11.36□□□□□ -0.59
SF3A1-202ENST00000411423 LPAP08519 4548 aa11.36□□□□□ -0.59
SF3A1-202ENST00000411423 IGLV1-50A0A075B6I6 118 aa11.35□□□□□ -0.59
SF3A1-202ENST00000411423 IGKV2-28A0A075B6P5 120 aa11.35□□□□□ -0.59
SF3A1-202ENST00000411423 IGKV2D-28P01615 120 aa11.35□□□□□ -0.59
SF3A1-202ENST00000411423 A0A0U1RRA0 63 aa11.34□□□□□ -0.59
SF3A1-202ENST00000411423 H0Y8G0 127 aa11.34□□□□□ -0.59
SF3A1-202ENST00000411423 LEPROTL1O95214 131 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms