RNA–Protein interactions for RNA: ENST00000402555.2

HMGB1P20-201, Transcript of high mobility group box 1 pseudogene 20, humanhuman

BASIC

Gene HMGB1P20, Length 677 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P20-201ENST00000402555 VCX2Q9H322 139 aa3.59□□□□□ -1.83
HMGB1P20-201ENST00000402555 LINC00474Q9P2X8 69 aa3.59□□□□□ -1.83
HMGB1P20-201ENST00000402555 C6orf48Q9UBA6 75 aa3.59□□□□□ -1.83
HMGB1P20-201ENST00000402555 PKIGQ9Y2B9 76 aa3.59□□□□□ -1.83
HMGB1P20-201ENST00000402555 CARHSP1Q9Y2V2 147 aaKnown RBP3.59□□□□□ -1.83
HMGB1P20-201ENST00000402555 HMCN2Q8NDA2 5059 aa3.59□□□□□ -1.84
HMGB1P20-201ENST00000402555 FAM168BA1KXE4 195 aa3.58□□□□□ -1.84
HMGB1P20-201ENST00000402555 FABP9Q0Z7S8 132 aa3.58□□□□□ -1.84
HMGB1P20-201ENST00000402555 GAGE2EQ4V326 116 aa3.58□□□□□ -1.84
HMGB1P20-201ENST00000402555 C9orf116Q5BN46 136 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P20-201ENST00000402555 PHF5AQ7RTV0 110 aaKnown RBP3.58□□□□□ -1.84
HMGB1P20-201ENST00000402555 TOMM6Q96B49 74 aa3.58□□□□□ -1.84
HMGB1P20-201ENST00000402555 C2orf88Q9BSF0 95 aa3.58□□□□□ -1.84
HMGB1P20-201ENST00000402555 ALKBH7Q9BT30 221 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P20-201ENST00000402555 GNB1LQ9BYB4 327 aa3.58□□□□□ -1.84
HMGB1P20-201ENST00000402555 MRPL35Q9NZE8 188 aaKnown RBP3.58□□□□□ -1.84
HMGB1P20-201ENST00000402555 TOMM7Q9P0U1 55 aa3.58□□□□□ -1.84
HMGB1P20-201ENST00000402555 GAGE2DQ9UEU5 116 aa3.58□□□□□ -1.84
HMGB1P20-201ENST00000402555 K7EMI3 77 aa3.57□□□□□ -1.84
HMGB1P20-201ENST00000402555 APOC3P02656 99 aa3.57□□□□□ -1.84
HMGB1P20-201ENST00000402555 MT1HL1P0DM35 61 aa3.57□□□□□ -1.84
HMGB1P20-201ENST00000402555 RHEBQ15382 184 aa3.57□□□□□ -1.84
HMGB1P20-201ENST00000402555 Q6ZRP5 223 aa3.57□□□□□ -1.84
HMGB1P20-201ENST00000402555 SCGB3A1Q96QR1 104 aa3.57□□□□□ -1.84
HMGB1P20-201ENST00000402555 TIMM17AQ99595 171 aa3.57□□□□□ -1.84
HMGB1P20-201ENST00000402555 CDKN2A-AS1Q9UH64 79 aa3.57□□□□□ -1.84
HMGB1P20-201ENST00000402555 F8WDY8 70 aa3.56□□□□□ -1.84
HMGB1P20-201ENST00000402555 MT-ND6P03923 174 aa3.56□□□□□ -1.84
HMGB1P20-201ENST00000402555 ODF1Q14990 250 aa3.56□□□□□ -1.84
HMGB1P20-201ENST00000402555 FA2HQ7L5A8 372 aa3.56□□□□□ -1.84
HMGB1P20-201ENST00000402555 ERASQ7Z444 233 aa3.56□□□□□ -1.84
HMGB1P20-201ENST00000402555 FAM19A5Q7Z5A7 132 aaPredicted RBP3.56□□□□□ -1.84
HMGB1P20-201ENST00000402555 FAM19A3Q7Z5A8 133 aa3.56□□□□□ -1.84
HMGB1P20-201ENST00000402555 KRTAP11-1Q8IUC1 163 aa3.56□□□□□ -1.84
HMGB1P20-201ENST00000402555 KRTAP7-1Q8IUC3 87 aa3.56□□□□□ -1.84
HMGB1P20-201ENST00000402555 GEMIN7Q9H840 131 aaKnown RBP3.56□□□□□ -1.84
HMGB1P20-201ENST00000402555 PSORS1C2Q9UIG4 136 aa3.56□□□□□ -1.84
HMGB1P20-201ENST00000402555 TNXBP22105 4242 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 TRBV30A0A0K0K1B3 111 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 LINC01546A6NGU7 62 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 PRSS2P07478 247 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 NPSP0C0P6 89 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 TLX1NBP0CAT3 122 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 G0S2P27469 103 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 HERVK_113P63121 156 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 PMCHL1Q16048 86 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 COX19Q49B96 90 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 PAPPA-AS1Q5QFB9 102 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 C9orf129Q5T035 196 aaKnown RBP3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 LINC01561Q8N1V8 128 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 LINC00469Q8N7U9 141 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 URB1-AS1Q96HZ7 61 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 PACRGQ96M98 296 aaPredicted RBP3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 SMCO4Q9NRQ5 59 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 TRAPPC1Q9Y5R8 145 aa3.55□□□□□ -1.84
HMGB1P20-201ENST00000402555 A0A096LNJ9 63 aa3.54□□□□□ -1.84
HMGB1P20-201ENST00000402555 SMIM1B2RUZ4 78 aa3.54□□□□□ -1.84
HMGB1P20-201ENST00000402555 SNAPINO95295 136 aa3.54□□□□□ -1.84
HMGB1P20-201ENST00000402555 SPINK8P0C7L1 97 aa3.54□□□□□ -1.84
HMGB1P20-201ENST00000402555 CKS1BP61024 79 aa3.54□□□□□ -1.84
HMGB1P20-201ENST00000402555 SRSF9Q13242 221 aaKnown RBP eCLIP3.54□□□□□ -1.84
HMGB1P20-201ENST00000402555 C6orf226Q5I0X4 101 aa3.54□□□□□ -1.84
HMGB1P20-201ENST00000402555 C1orf137Q5JT78 98 aa3.54□□□□□ -1.84
HMGB1P20-201ENST00000402555 Q8IZM0 81 aa3.54□□□□□ -1.84
HMGB1P20-201ENST00000402555 C18orf32Q8TCD1 76 aa3.54□□□□□ -1.84
HMGB1P20-201ENST00000402555 CST9LQ9H4G1 147 aa3.54□□□□□ -1.84
HMGB1P20-201ENST00000402555 XAGE1AQ9HD64 81 aa3.54□□□□□ -1.84
HMGB1P20-201ENST00000402555 TINCRA0A1B0GVN0 87 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 NDUFC2-KCTD14E9PQ53 114 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 M0QXV9 152 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 NDUFA6P56556 154 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 SEC11AP67812 179 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 PMVKQ15126 192 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 NDUFA5Q16718 116 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 SERTAD4-AS1Q5TG53 156 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 SPINK6Q6UWN8 80 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 SVBPQ8N300 66 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 COX7B2Q8TF08 81 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 LINC01600Q96MT4 127 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 YPEL4Q96NS1 127 aa3.53□□□□□ -1.84
HMGB1P20-201ENST00000402555 IGLV5-45A0A087WSX0 123 aa3.52□□□□□ -1.85
HMGB1P20-201ENST00000402555 F8VRH5 84 aa3.52□□□□□ -1.85
HMGB1P20-201ENST00000402555 HBDP02042 147 aa3.52□□□□□ -1.85
HMGB1P20-201ENST00000402555 LINC00614P0C842 121 aa3.52□□□□□ -1.85
HMGB1P20-201ENST00000402555 UBE2BP63146 152 aa3.52□□□□□ -1.85
HMGB1P20-201ENST00000402555 REG3GQ6UW15 175 aa3.52□□□□□ -1.85
HMGB1P20-201ENST00000402555 CBLN2Q8IUK8 224 aa3.52□□□□□ -1.85
HMGB1P20-201ENST00000402555 LINC01549A6NIU2 74 aa3.51□□□□□ -1.85
HMGB1P20-201ENST00000402555 IGLV7-43P04211 117 aa3.51□□□□□ -1.85
HMGB1P20-201ENST00000402555 IGLC3P0DOY3 106 aa3.51□□□□□ -1.85
HMGB1P20-201ENST00000402555 ZNF22P17026 224 aaPredicted RBP3.51□□□□□ -1.85
HMGB1P20-201ENST00000402555 KRTAP10-8P60410 259 aa3.51□□□□□ -1.85
HMGB1P20-201ENST00000402555 RAB5BP61020 215 aa3.51□□□□□ -1.85
HMGB1P20-201ENST00000402555 PDZD11Q5EBL8 140 aa3.51□□□□□ -1.85
HMGB1P20-201ENST00000402555 UBR4Q5T4S7 5183 aa3.51□□□□□ -1.85
HMGB1P20-201ENST00000402555 C11orf86A6NJI1 115 aa3.5□□□□□ -1.85
HMGB1P20-201ENST00000402555 H3BRM9 83 aa3.5□□□□□ -1.85
HMGB1P20-201ENST00000402555 CXCL5P42830 114 aa3.5□□□□□ -1.85
HMGB1P20-201ENST00000402555 BAGE3Q86Y29 109 aa3.5□□□□□ -1.85
HMGB1P20-201ENST00000402555 SLC7A5P1Q8MH63 180 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms