RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 A0A096LPF7 62 aa14.41□□□□□ -0.1
CLK3-202ENST00000395066 IGHV3OR16-9A0A0B4J2B5 98 aa14.4□□□□□ -0.1
CLK3-202ENST00000395066 DNAL4O96015 105 aa14.4□□□□□ -0.1
CLK3-202ENST00000395066 SMIM11BQ8TCY0 68 aa14.4□□□□□ -0.1
CLK3-202ENST00000395066 A0A087WYN8 130 aa14.4□□□□□ -0.1
CLK3-202ENST00000395066 UQCRQO14949 82 aa14.4□□□□□ -0.1
CLK3-202ENST00000395066 RNASE1P07998 156 aaKnown RBP14.38□□□□□ -0.11
CLK3-202ENST00000395066 CCL18P55774 89 aa14.38□□□□□ -0.11
CLK3-202ENST00000395066 XCL1P47992 114 aa14.36□□□□□ -0.11
CLK3-202ENST00000395066 C9orf129Q5T035 196 aaKnown RBP14.36□□□□□ -0.11
CLK3-202ENST00000395066 LINC00526Q96FQ7 95 aa14.36□□□□□ -0.11
CLK3-202ENST00000395066 H0YGX0 51 aa14.35□□□□□ -0.11
CLK3-202ENST00000395066 CMC4P56277 68 aaPredicted RBP14.35□□□□□ -0.11
CLK3-202ENST00000395066 GYPEP15421 78 aa14.34□□□□□ -0.11
CLK3-202ENST00000395066 SMR3AQ99954 134 aa14.34□□□□□ -0.11
CLK3-202ENST00000395066 C16orf95Q9H693 158 aa14.34□□□□□ -0.11
CLK3-202ENST00000395066 C14orf132Q9NPU4 83 aa14.34□□□□□ -0.11
CLK3-202ENST00000395066 LINC00959A0A1B0GUT2 108 aa14.34□□□□□ -0.11
CLK3-202ENST00000395066 A0A087WZ39 114 aa14.33□□□□□ -0.11
CLK3-202ENST00000395066 KRTAP10-3P60369 221 aa14.32□□□□□ -0.12
CLK3-202ENST00000395066 FASNP49327 2511 aaKnown RBP14.32□□□□□ -0.12
CLK3-202ENST00000395066 HIVEP2P31629 2446 aa14.32□□□□□ -0.12
CLK3-202ENST00000395066 IBA57-AS1B1ANH7 110 aa14.32□□□□□ -0.12
CLK3-202ENST00000395066 COX7CP15954 63 aa14.32□□□□□ -0.12
CLK3-202ENST00000395066 PAX4O43316 350 aa14.31□□□□□ -0.12
CLK3-202ENST00000395066 HIST1H4AP62805 103 aaKnown RBP14.31□□□□□ -0.12
CLK3-202ENST00000395066 SPATA3Q8NHX4 192 aa14.31□□□□□ -0.12
CLK3-202ENST00000395066 DEFB4AO15263 64 aa14.31□□□□□ -0.12
CLK3-202ENST00000395066 LECT2O14960 151 aa14.3□□□□□ -0.12
CLK3-202ENST00000395066 OR13C6PQ8NH95 151 aa14.3□□□□□ -0.12
CLK3-202ENST00000395066 OBSCN-AS1Q96MR7 158 aa14.3□□□□□ -0.12
CLK3-202ENST00000395066 HELZ2Q9BYK8 2649 aaKnown RBP14.3□□□□□ -0.12
CLK3-202ENST00000395066 C6orf226Q5I0X4 101 aa14.3□□□□□ -0.12
CLK3-202ENST00000395066 Q8N3U1 123 aa14.29□□□□□ -0.12
CLK3-202ENST00000395066 C2orf48Q96LS8 159 aa14.29□□□□□ -0.12
CLK3-202ENST00000395066 ATOX1O00244 68 aa14.29□□□□□ -0.12
CLK3-202ENST00000395066 KLK5Q9Y337 293 aaPredicted RBP14.29□□□□□ -0.12
CLK3-202ENST00000395066 UNC79Q9P2D8 2635 aa14.29□□□□□ -0.12
CLK3-202ENST00000395066 LINC00482Q8N8I6 264 aa14.28□□□□□ -0.12
CLK3-202ENST00000395066 SLPIP03973 132 aa14.28□□□□□ -0.12
CLK3-202ENST00000395066 LINC00846Q9NV44 126 aa14.27□□□□□ -0.13
CLK3-202ENST00000395066 PRR3P79522 188 aaKnown RBP14.27□□□□□ -0.13
CLK3-202ENST00000395066 IGKV3D-7A0A0C4DH55 119 aa14.26□□□□□ -0.13
CLK3-202ENST00000395066 NCR3O14931 201 aa14.25□□□□□ -0.13
CLK3-202ENST00000395066 Q6JHZ5 121 aa14.25□□□□□ -0.13
CLK3-202ENST00000395066 X6R8D5 127 aa14.25□□□□□ -0.13
CLK3-202ENST00000395066 NOTCH2Q04721 2471 aa14.24□□□□□ -0.13
CLK3-202ENST00000395066 IGLV10-54A0A075B6I4 117 aa14.24□□□□□ -0.13
CLK3-202ENST00000395066 HILS1P60008 231 aa14.24□□□□□ -0.13
CLK3-202ENST00000395066 CRYGAP11844 174 aa14.24□□□□□ -0.13
CLK3-202ENST00000395066 RPL18AQ02543 176 aaKnown RBP14.24□□□□□ -0.13
CLK3-202ENST00000395066 TENM1Q9UKZ4 2725 aa14.23□□□□□ -0.13
CLK3-202ENST00000395066 KIR2DL5BQ8NHK3 375 aa14.23□□□□□ -0.13
CLK3-202ENST00000395066 LY6G6DO95868 133 aa14.22□□□□□ -0.13
CLK3-202ENST00000395066 SS18Q15532 418 aa14.21□□□□□ -0.13
CLK3-202ENST00000395066 LINC00269Q8N2A0 174 aa14.21□□□□□ -0.14
CLK3-202ENST00000395066 ORMDL1Q9P0S3 153 aa14.21□□□□□ -0.14
CLK3-202ENST00000395066 LINC00612Q8N6U2 182 aa14.2□□□□□ -0.14
CLK3-202ENST00000395066 A0A1B0GX51 115 aa14.19□□□□□ -0.14
CLK3-202ENST00000395066 C9orf116Q5BN46 136 aaPredicted RBP14.19□□□□□ -0.14
CLK3-202ENST00000395066 DEFB135Q30KP9 77 aa14.19□□□□□ -0.14
CLK3-202ENST00000395066 PRO0255Q9UI72 69 aa14.19□□□□□ -0.14
CLK3-202ENST00000395066 A0A087WVE0 104 aa14.18□□□□□ -0.14
CLK3-202ENST00000395066 hADV29S1A0JD25 119 aa14.18□□□□□ -0.14
CLK3-202ENST00000395066 HECTD1Q9ULT8 2610 aa14.17□□□□□ -0.14
CLK3-202ENST00000395066 TRRAPQ9Y4A5 3859 aa14.17□□□□□ -0.14
CLK3-202ENST00000395066 LOC107984640A0A0U1RRK4 108 aa14.16□□□□□ -0.14
CLK3-202ENST00000395066 A0A1B0GUV1 79 aa14.16□□□□□ -0.14
CLK3-202ENST00000395066 Q8IZM0 81 aa14.15□□□□□ -0.14
CLK3-202ENST00000395066 LINC01561Q8N1V8 128 aa14.15□□□□□ -0.14
CLK3-202ENST00000395066 OTOGQ6ZRI0 2925 aa14.15□□□□□ -0.14
CLK3-202ENST00000395066 CCKP06307 115 aa14.14□□□□□ -0.15
CLK3-202ENST00000395066 ANGP03950 147 aaKnown RBP14.14□□□□□ -0.15
CLK3-202ENST00000395066 SERP2Q8N6R1 65 aa14.14□□□□□ -0.15
CLK3-202ENST00000395066 CYSTM1Q9H1C7 97 aa14.14□□□□□ -0.15
CLK3-202ENST00000395066 J3KT08 172 aa14.13□□□□□ -0.15
CLK3-202ENST00000395066 NANOS2P60321 138 aaKnown RBP14.13□□□□□ -0.15
CLK3-202ENST00000395066 CFAP161Q6P656 301 aa14.13□□□□□ -0.15
CLK3-202ENST00000395066 CHCHD10Q8WYQ3 142 aaPredicted RBP14.13□□□□□ -0.15
CLK3-202ENST00000395066 LINC00167Q96N53 147 aa14.13□□□□□ -0.15
CLK3-202ENST00000395066 USP17L23D6RBM5 183 aa14.12□□□□□ -0.15
CLK3-202ENST00000395066 KIAA0087Q14695 138 aa14.12□□□□□ -0.15
CLK3-202ENST00000395066 Q8NDZ9 215 aa14.12□□□□□ -0.15
CLK3-202ENST00000395066 CELA1Q9UNI1 258 aa14.11□□□□□ -0.15
CLK3-202ENST00000395066 Q8N814 137 aa14.1□□□□□ -0.15
CLK3-202ENST00000395066 JMJD7-PLA2G4BH0Y9G9 81 aa14.1□□□□□ -0.15
CLK3-202ENST00000395066 REG3AQ06141 175 aa14.1□□□□□ -0.15
CLK3-202ENST00000395066 HTN3P15516 51 aa14.09□□□□□ -0.15
CLK3-202ENST00000395066 UPK3BQ9BT76 320 aa14.09□□□□□ -0.15
CLK3-202ENST00000395066 ATRQ13535 2644 aa14.08□□□□□ -0.15
CLK3-202ENST00000395066 IGHV4-28A0A0C4DH34 117 aa14.08□□□□□ -0.16
CLK3-202ENST00000395066 CD164L2Q6UWJ8 174 aa14.08□□□□□ -0.16
CLK3-202ENST00000395066 C6orf223Q8N319 242 aa14.08□□□□□ -0.16
CLK3-202ENST00000395066 S100A7L2Q5SY68 101 aa14.07□□□□□ -0.16
CLK3-202ENST00000395066 TMEM256-PLSCR3K7ERE1 68 aa14.07□□□□□ -0.16
CLK3-202ENST00000395066 RPS28P62857 69 aaKnown RBP14.06□□□□□ -0.16
CLK3-202ENST00000395066 C10orf25Q5T742 122 aa14.06□□□□□ -0.16
CLK3-202ENST00000395066 SMIM9A6NGZ8 99 aa14.05□□□□□ -0.16
CLK3-202ENST00000395066 DAD1P61803 113 aa14.05□□□□□ -0.16
CLK3-202ENST00000395066 HIVEP1P15822 2718 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms