RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 HIVEP1P15822 2718 aa6.85□□□□□ -1.31
COL6A3-204ENST00000392003 FP248Q71RG6 208 aaPredicted RBP6.84□□□□□ -1.31
COL6A3-204ENST00000392003 UPK3BQ9BT76 320 aa6.84□□□□□ -1.31
COL6A3-204ENST00000392003 C19orf73Q9NVV2 129 aa6.84□□□□□ -1.31
COL6A3-204ENST00000392003 ZNF469Q96JG9 3925 aaPredicted RBP6.84□□□□□ -1.31
COL6A3-204ENST00000392003 FHL2Q14192 279 aa6.84□□□□□ -1.31
COL6A3-204ENST00000392003 LINC01620Q4KN68 170 aa6.84□□□□□ -1.31
COL6A3-204ENST00000392003 CDC42SE2Q9NRR3 84 aa6.84□□□□□ -1.31
COL6A3-204ENST00000392003 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.84□□□□□ -1.32
COL6A3-204ENST00000392003 LINC00474Q9P2X8 69 aa6.84□□□□□ -1.32
COL6A3-204ENST00000392003 H7C423 109 aa6.83□□□□□ -1.32
COL6A3-204ENST00000392003 EIF4EBP3O60516 100 aaPredicted RBP6.83□□□□□ -1.32
COL6A3-204ENST00000392003 C9orf66Q5T8R8 295 aa6.83□□□□□ -1.32
COL6A3-204ENST00000392003 PRIMA1Q86XR5 153 aa6.83□□□□□ -1.32
COL6A3-204ENST00000392003 ZNF625Q96I27 306 aaPredicted RBP6.83□□□□□ -1.32
COL6A3-204ENST00000392003 NSD1Q96L73 2696 aaPredicted RBP6.83□□□□□ -1.32
COL6A3-204ENST00000392003 TRBV30A0A0K0K1B3 111 aa6.83□□□□□ -1.32
COL6A3-204ENST00000392003 IGLV5-39A0A0G2JS06 123 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 PLAC8L1A1L4L8 177 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 KRTAP10-3P60369 221 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 C11orf45Q8TAV5 145 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 LOC100131303A0A0U1RQF7 123 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 DEFB130BP0DP73 79 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 DEFB130AP0DP74 79 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 ICOSQ9Y6W8 199 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 IGKV3OR2-268A0A0C4DH90 116 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 SMIM1B2RUZ4 78 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 FAM19A3Q7Z5A8 133 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 DAND5Q8N907 189 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 CSNK1G2-AS1Q8NCQ2 148 aa6.82□□□□□ -1.32
COL6A3-204ENST00000392003 TRIAP1O43715 76 aa6.81□□□□□ -1.32
COL6A3-204ENST00000392003 TEP1Q99973 2627 aaKnown RBP6.81□□□□□ -1.32
COL6A3-204ENST00000392003 NIPBLQ6KC79 2804 aaeCLIP6.8□□□□□ -1.32
COL6A3-204ENST00000392003 A0A087WVE0 104 aa6.8□□□□□ -1.32
COL6A3-204ENST00000392003 TRBV6-8A0A0A6YYG3 113 aa6.8□□□□□ -1.32
COL6A3-204ENST00000392003 PMAIP1Q13794 54 aa6.8□□□□□ -1.32
COL6A3-204ENST00000392003 LINC00308Q8TCZ7 52 aa6.8□□□□□ -1.32
COL6A3-204ENST00000392003 TOMM7Q9P0U1 55 aa6.79□□□□□ -1.32
COL6A3-204ENST00000392003 OTOGQ6ZRI0 2925 aa6.79□□□□□ -1.32
COL6A3-204ENST00000392003 TRBV10-2A0A0K0K1G8 114 aa6.79□□□□□ -1.32
COL6A3-204ENST00000392003 IMUPQ9GZP8 106 aa6.78□□□□□ -1.32
COL6A3-204ENST00000392003 SDIM1Q6ZPB5 146 aa6.78□□□□□ -1.32
COL6A3-204ENST00000392003 COX7B2Q8TF08 81 aa6.77□□□□□ -1.33
COL6A3-204ENST00000392003 GYPEP15421 78 aa6.77□□□□□ -1.33
COL6A3-204ENST00000392003 CUBNO60494 3623 aa6.77□□□□□ -1.33
COL6A3-204ENST00000392003 C5orf38Q86SI9 138 aa6.77□□□□□ -1.33
COL6A3-204ENST00000392003 ATOX1O00244 68 aa6.76□□□□□ -1.33
COL6A3-204ENST00000392003 FAM240AA0A1B0GVK7 77 aa6.76□□□□□ -1.33
COL6A3-204ENST00000392003 H3BT86 120 aa6.76□□□□□ -1.33
COL6A3-204ENST00000392003 DEFB135Q30KP9 77 aa6.76□□□□□ -1.33
COL6A3-204ENST00000392003 CLEC2BQ92478 149 aa6.76□□□□□ -1.33
COL6A3-204ENST00000392003 IGLV4-60A0A075B6I1 120 aa6.75□□□□□ -1.33
COL6A3-204ENST00000392003 APOC4P55056 127 aa6.75□□□□□ -1.33
COL6A3-204ENST00000392003 HIST1H4AP62805 103 aaKnown RBP6.75□□□□□ -1.33
COL6A3-204ENST00000392003 PRO0255Q9UI72 69 aa6.75□□□□□ -1.33
COL6A3-204ENST00000392003 NBEAL2Q6ZNJ1 2754 aa6.75□□□□□ -1.33
COL6A3-204ENST00000392003 LINC00158P58513 81 aa6.75□□□□□ -1.33
COL6A3-204ENST00000392003 ANK3Q12955 4377 aaKnown RBP6.75□□□□□ -1.33
COL6A3-204ENST00000392003 LST1O00453 97 aa6.74□□□□□ -1.33
COL6A3-204ENST00000392003 DEFB4AO15263 64 aa6.74□□□□□ -1.33
COL6A3-204ENST00000392003 SERP2Q8N6R1 65 aa6.74□□□□□ -1.33
COL6A3-204ENST00000392003 PAX4O43316 350 aa6.74□□□□□ -1.33
COL6A3-204ENST00000392003 ATP5G1P05496 136 aa6.74□□□□□ -1.33
COL6A3-204ENST00000392003 IGKV3D-7A0A0C4DH55 119 aa6.74□□□□□ -1.33
COL6A3-204ENST00000392003 LYRM9A8MSI8 78 aa6.74□□□□□ -1.33
COL6A3-204ENST00000392003 RPL18AQ02543 176 aaKnown RBP6.74□□□□□ -1.33
COL6A3-204ENST00000392003 S100A7L2Q5SY68 101 aa6.74□□□□□ -1.33
COL6A3-204ENST00000392003 LINC00643Q86TS7 51 aa6.74□□□□□ -1.33
COL6A3-204ENST00000392003 HTN3P15516 51 aa6.73□□□□□ -1.33
COL6A3-204ENST00000392003 RBM3P98179 157 aaKnown RBP6.73□□□□□ -1.33
COL6A3-204ENST00000392003 LINC00612Q8N6U2 182 aa6.73□□□□□ -1.33
COL6A3-204ENST00000392003 SPATA3Q8NHX4 192 aa6.73□□□□□ -1.33
COL6A3-204ENST00000392003 X6R8D5 127 aa6.73□□□□□ -1.33
COL6A3-204ENST00000392003 FAM222AQ5U5X8 452 aa6.73□□□□□ -1.33
COL6A3-204ENST00000392003 MAST4O15021 2626 aa6.73□□□□□ -1.33
COL6A3-204ENST00000392003 AKAP9Q99996 3911 aa6.73□□□□□ -1.33
COL6A3-204ENST00000392003 TRAV13-2A0A0B4J235 113 aa6.73□□□□□ -1.33
COL6A3-204ENST00000392003 CRPP02741 224 aa6.73□□□□□ -1.33
COL6A3-204ENST00000392003 SOSTDC1Q6X4U4 206 aa6.73□□□□□ -1.33
COL6A3-204ENST00000392003 MIR7-3HGQ8N6C7 128 aa6.73□□□□□ -1.33
COL6A3-204ENST00000392003 MPLKIPQ8TAP9 179 aa6.73□□□□□ -1.33
COL6A3-204ENST00000392003 IGHV3OR16-9A0A0B4J2B5 98 aa6.72□□□□□ -1.33
COL6A3-204ENST00000392003 LINC00959A0A1B0GUT2 108 aa6.72□□□□□ -1.33
COL6A3-204ENST00000392003 EPM2AB3EWF7 344 aa6.72□□□□□ -1.33
COL6A3-204ENST00000392003 H3BS24 57 aa6.72□□□□□ -1.33
COL6A3-204ENST00000392003 COX7A2LO14548 114 aa6.72□□□□□ -1.33
COL6A3-204ENST00000392003 A0A096LPF7 62 aa6.72□□□□□ -1.33
COL6A3-204ENST00000392003 DAD1P61803 113 aa6.72□□□□□ -1.33
COL6A3-204ENST00000392003 LYPD5Q6UWN5 251 aa6.72□□□□□ -1.33
COL6A3-204ENST00000392003 A0A087WZ39 114 aa6.71□□□□□ -1.33
COL6A3-204ENST00000392003 CD164Q04900 197 aa6.71□□□□□ -1.33
COL6A3-204ENST00000392003 ACYP1P07311 99 aa6.71□□□□□ -1.34
COL6A3-204ENST00000392003 SND1-IT1Q9HBX3 110 aa6.71□□□□□ -1.34
COL6A3-204ENST00000392003 XCL1P47992 114 aa6.71□□□□□ -1.34
COL6A3-204ENST00000392003 LINC01600Q96MT4 127 aa6.71□□□□□ -1.34
COL6A3-204ENST00000392003 IBA57-AS1B1ANH7 110 aa6.7□□□□□ -1.34
COL6A3-204ENST00000392003 A0A1B0GUV1 79 aa6.7□□□□□ -1.34
COL6A3-204ENST00000392003 C20orf197Q8N268 126 aa6.7□□□□□ -1.34
COL6A3-204ENST00000392003 DEFB121Q5J5C9 76 aa6.7□□□□□ -1.34
COL6A3-204ENST00000392003 C11orf68Q9H3H3 251 aaKnown RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms